MD08G1003400.v1.1

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0016175
Physical Location & Seq
Forward (+)
358312 .. 359367
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1003400.v1.1.491

Sequence Viewer

Length: 1056 bp
ATGGTAGGCGTTTTCCGGCGGTCTCTCTCTTTCCCAAACAAAATAAACCCAAGCAATATTCCAAATAACCGTAACCACCGTCCATCAAAAGTCCGACCGCCGTTGTCTCGTCACACCAGATCCATCAGTCTTCCAACCGGACCCCACCCCTTCATTTCCCACCTCAAAGAACACATAGCCAGCCTTCAATCCTTCAAATATTCCTATTCCACCACCAACTCCTCCTCTTCCTCCTCAGCCCCCTTCTCCGATTGGCTATGCGAAGGCTTGACCCGCCTCAAAGACTTGCACCACTGCCTCGATGACACTCTCCGCCTTCCCCAAACCCAAGAATCCCTCCGCCGTCTCAAAGGCTGCTGCTCCGTCGATAACCTTCTCGACCAATTCCTCCGTTTTGCCGACATCTACGGAATATTCCGCACCTCCGTTTTGGCTCTCAAACAGGATCACTCCGCTGCTCAAGTGGCTTTGAGGAAGAGAAACGACTCCCAGGTAGCATTGTACGTCAAAGCTAGAAAGAGAATGGCCAAGGAAATGATAAAGCTAGTCAACGCACTTCGTTCCATCGCACGGCCAGCACCGGCCGCGGCCACGCCGTTCGAGTACGTTGGCGACGATATTAGTTACTATAACGTTGACCATGAGCTGGCGGGTGTTATGAGCGAGGTCGTTCAAGTGACGGTCGCGGTGTCTCTTGCACTTTTTACTGGAGTCGCGGCAGACATATCATTCGGCGGGCCCACAATATCATCATCCAAATCGACTGTCACGTCGTCAATGCGGGCAACGTGGATGGGAATATTCAACATCAAGGCAACGTTAGATAATCAATTATGTACTGATCGTCACGAAAACCCAGTACGAGTTAGTAATAATATCGGAGTTGGGAGCTTGCGTAACTTGAAAAAGAAAGGAGATGAAGAAGTCAAAACAACATTAAAGAAGATGCAGGAATTGGAGGCGTCCATGGCTGGGATTGAAACTTGCTCCGAAACAGTTTTCAGGAGTTTAATCAACGCTAGGGTTTCACTGCTCAACACTCTCACCCTACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

352

Amino Acids

38.91

Weight (kDa)

9.69

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 89 - 346 1.4e-47 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76240
fragaria_vesca FvH4_2g37580
malus_domestica MD08G1003400.v1.1
prunus_persica Prupe.1G355300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304151
rosa_laevigata RLG00000011010
rosa_multiflora Rmu_co8398387.1_g000001 Rmu_ssc0000218.1_g000007
rosa_roxburghii Rroxscaffold_7G00164020
rosa_rugosa Rorug06G0328000
rosa_samantha Rh6AG442100 Rh6BG460700 Rh6CG454300 Rh6DG441500
rosa_wichuraiana Rw6G038320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 769
AccB7I CCANNNNNTGG 1 cut(s) 646
AccII CGCG 3 cut(s) 587, 686, 716
AclI AACGTT 2 cut(s) 633, 818
AclWI GGATC 2 cut(s) 114, 453
AcoI YGGCCR 4 cut(s) 525, 572, 582, 588
AcyI GRCGYC 1 cut(s) 962
AfaI GTAC 4 cut(s) 503, 605, 838, 861
AfiI CCNNNNNNNGG 3 cut(s) 570, 646, 972
AgsI TTSAA 6 cut(s) 188, 196, 674, 805, 904, 980
AjiI CACGTC 1 cut(s) 771
AjnI CCWGG 1 cut(s) 489
AluBI AGCT 4 cut(s) 512, 544, 646, 891
AluI AGCT 4 cut(s) 512, 544, 646, 891
Alw26I GTCTC 4 cut(s) 27, 111, 350, 696
AlwI GGATC 2 cut(s) 114, 453
AoxI GGCC 5 cut(s) 525, 572, 582, 588, 737
ApaI GGGCCC 1 cut(s) 741
ApeKI GCWGC 3 cut(s) 354, 357, 455
ArsI GACNNNNNNTTYG 4 cut(s) 713, 745, 750, 782
AspS9I GGNCC 3 cut(s) 140, 737, 738
AsuHPI GGTGA 1 cut(s) 1036
AvaII GGWCC 1 cut(s) 140
BaeGI GKGCMC 1 cut(s) 741
BalI TGGCCA 1 cut(s) 527
BanII GRGCYC 1 cut(s) 741
BbsI GAAGAC 1 cut(s) 122
BbvCI CCTCAGC 1 cut(s) 235
BbvI GCAGC 3 cut(s) 341, 344, 442
BccI CCATC 4 cut(s) 91, 131, 572, 787
BceAI ACGGC 4 cut(s) 85, 327, 580, 587
BciT130I CCWGG 1 cut(s) 491
BcoDI GTCTC 4 cut(s) 27, 111, 350, 696
BfaI CTAG 3 cut(s) 513, 545, 1020
BisI GCNGC 6 cut(s) 355, 358, 456, 585, 588, 717
BlsI GCNGC 6 cut(s) 356, 359, 457, 586, 589, 718
Bme1390I CCNGG 1 cut(s) 491
Bme18I GGWCC 1 cut(s) 140
BmgBI CACGTC 1 cut(s) 771
BmgT120I GGNCC 3 cut(s) 140, 737, 738
BmiI GGNNCC 2 cut(s) 142, 739
BmrFI CCNGG 1 cut(s) 491
BmrI ACTGGG 1 cut(s) 851
BmsI GCATC 1 cut(s) 936
BmuI ACTGGG 1 cut(s) 851
BpiI GAAGAC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 729
Bpu10I CCTNAGC 1 cut(s) 235
BpuEI CTTGAG 1 cut(s) 444
BsaHI GRCGYC 1 cut(s) 962
BsaI GGTCTC 1 cut(s) 27
BsaJI CCNNGG 4 cut(s) 489, 528, 585, 966
BsaWI WCCGGW 1 cut(s) 137
BsaXI ACNNNNNCTCC 2 cut(s) 880, 910
Bsc4I CCNNNNNNNGG 3 cut(s) 570, 646, 972
Bse118I RCCGGY 1 cut(s) 580
Bse1I ACTGG 2 cut(s) 712, 857
BseBI CCWGG 1 cut(s) 491
BseDI CCNNGG 4 cut(s) 489, 528, 585, 966
BseGI GGATG 2 cut(s) 752, 798
BseLI CCNNNNNNNGG 3 cut(s) 570, 646, 972
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 2 cut(s) 712, 857
BseRI GAGGAG 3 cut(s) 211, 214, 223
BseSI GKGCMC 1 cut(s) 741
BseX3I CGGCCG 1 cut(s) 582
BseXI GCAGC 3 cut(s) 341, 344, 442
BseYI CCCAGC 1 cut(s) 971
Bsh1236I CGCG 3 cut(s) 587, 686, 716
Bsh1285I CGRYCG 3 cut(s) 98, 585, 684
BshFI GGCC 5 cut(s) 527, 574, 584, 590, 739
BsiEI CGRYCG 3 cut(s) 98, 585, 684
BsiSI CCGG 3 cut(s) 16, 138, 581
BslI CCNNNNNNNGG 3 cut(s) 570, 646, 972
BsmAI GTCTC 4 cut(s) 27, 111, 350, 696
BsmBI CGTCTC 1 cut(s) 350
BsnI GGCC 5 cut(s) 527, 574, 584, 590, 739
Bso31I GGTCTC 1 cut(s) 27
Bsp120I GGGCCC 1 cut(s) 737
Bsp1286I GDGCHC 1 cut(s) 741
Bsp143I GATC 3 cut(s) 119, 445, 841
Bsp19I CCATGG 1 cut(s) 966
BspANI GGCC 5 cut(s) 527, 574, 584, 590, 739
BspCNI CTCAG 1 cut(s) 248
BspFNI CGCG 3 cut(s) 587, 686, 716
BspLI GGNNCC 2 cut(s) 142, 739
BspPI GGATC 2 cut(s) 114, 453
BspTNI GGTCTC 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 580
BsrI ACTGG 2 cut(s) 712, 857
BssAI RCCGGY 1 cut(s) 580
BssECI CCNNGG 4 cut(s) 489, 528, 585, 966
BssMI GATC 3 cut(s) 119, 445, 841
BssNI GRCGYC 1 cut(s) 962
BssT1I CCWWGG 2 cut(s) 528, 966
Bst2UI CCWGG 1 cut(s) 491
Bst4CI ACNGT 5 cut(s) 71, 80, 682, 766, 997
Bst6I CTCTTC 2 cut(s) 232, 470
BstACI GRCGYC 1 cut(s) 962
BstC8I GCNNGC 6 cut(s) 181, 576, 648, 737, 783, 893
BstDEI CTNAG 1 cut(s) 235
BstDSI CCRYGG 2 cut(s) 585, 966
BstF5I GGATG 2 cut(s) 752, 798
BstFNI CGCG 3 cut(s) 587, 686, 716
BstKTI GATC 3 cut(s) 122, 448, 844
BstMAI GTCTC 4 cut(s) 27, 111, 350, 696
BstMBI GATC 3 cut(s) 119, 445, 841
BstMCI CGRYCG 3 cut(s) 98, 585, 684
BstMWI GCNNNNNNNGC 5 cut(s) 273, 464, 575, 584, 968
BstNI CCWGG 1 cut(s) 491
BstSCI CCNGG 1 cut(s) 489
BstSLI GKGCMC 1 cut(s) 741
BstUI CGCG 3 cut(s) 587, 686, 716
BstV1I GCAGC 3 cut(s) 341, 344, 442
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BstZI CGGCCG 1 cut(s) 582
BsuRI GGCC 5 cut(s) 527, 574, 584, 590, 739
BtgI CCRYGG 2 cut(s) 585, 966
BtgZI GCGATG 1 cut(s) 550
BtrI CACGTC 1 cut(s) 771
BtsCI GGATG 2 cut(s) 752, 798
BtsI GCAGTG 2 cut(s) 292, 1028
BtsIMutI CAGTG 2 cut(s) 292, 1028
Cac8I GCNNGC 6 cut(s) 181, 576, 648, 737, 783, 893
Cfr10I RCCGGY 1 cut(s) 580
Cfr13I GGNCC 3 cut(s) 140, 737, 738
Cfr42I CCGCGG 1 cut(s) 588
CseI GACGC 1 cut(s) 951
Csp6I GTAC 4 cut(s) 502, 604, 837, 860
CviAII CATG 2 cut(s) 641, 967
CviQI GTAC 4 cut(s) 502, 604, 837, 860
DdeI CTNAG 1 cut(s) 235
DpnI GATC 3 cut(s) 121, 447, 843
DpnII GATC 3 cut(s) 119, 445, 841
DrdI GACNNNNNNGTC 1 cut(s) 769
DseDI GACNNNNNNGTC 1 cut(s) 769
EaeI YGGCCR 4 cut(s) 525, 572, 582, 588
EagI CGGCCG 1 cut(s) 582
Eam1104I CTCTTC 2 cut(s) 232, 470
EarI CTCTTC 2 cut(s) 232, 470
EciI GGCGGA 2 cut(s) 302, 329
EclXI CGGCCG 1 cut(s) 582
Eco130I CCWWGG 2 cut(s) 528, 966
Eco24I GRGCYC 1 cut(s) 741
Eco31I GGTCTC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 140
Eco52I CGGCCG 1 cut(s) 582
EcoRII CCWGG 1 cut(s) 489
EcoT14I CCWWGG 2 cut(s) 528, 966
EcoT38I GRGCYC 1 cut(s) 741
ErhI CCWWGG 2 cut(s) 528, 966
Esp3I CGTCTC 1 cut(s) 350
FaeI CATG 2 cut(s) 644, 970
FaiI YATR 8 cut(s) 176, 259, 630, 642, 659, 725, 835, 968
FatI CATG 2 cut(s) 640, 966
FauI CCCGC 4 cut(s) 281, 643, 728, 774
Fnu4HI GCNGC 6 cut(s) 355, 358, 456, 585, 588, 717
FokI GGATG 2 cut(s) 739, 805
FriOI GRGCYC 1 cut(s) 741
Fsp4HI GCNGC 6 cut(s) 355, 358, 456, 585, 588, 717
FspBI CTAG 3 cut(s) 513, 545, 1020
GluI GCNGC 6 cut(s) 355, 358, 456, 585, 588, 717
GsaI CCCAGC 1 cut(s) 975
GsuI CTGGAG 1 cut(s) 729
HaeIII GGCC 5 cut(s) 527, 574, 584, 590, 739
HapII CCGG 3 cut(s) 16, 138, 581
HgaI GACGC 1 cut(s) 951
Hin1I GRCGYC 1 cut(s) 962
Hin1II CATG 2 cut(s) 644, 970
HincII GTYRAC 2 cut(s) 550, 637
HindII GTYRAC 2 cut(s) 550, 637
HinfI GANTC 3 cut(s) 332, 485, 711
HpaII CCGG 3 cut(s) 16, 138, 581
HphI GGTGA 1 cut(s) 1036
Hpy166II GTNNAC 2 cut(s) 550, 637
Hpy188I TCNGA 4 cut(s) 95, 250, 881, 991
Hpy188III TCNNGA 3 cut(s) 377, 848, 1003
Hpy8I GTNNAC 2 cut(s) 550, 637
Hpy99I CGWCG 3 cut(s) 368, 617, 775
HpyAV CCTTC 7 cut(s) 160, 194, 202, 253, 257, 326, 383
HpyCH4III ACNGT 5 cut(s) 71, 80, 682, 766, 997
HpyCH4IV ACGT 6 cut(s) 504, 606, 633, 770, 788, 818
HpyCH4V TGCA 3 cut(s) 289, 698, 949
HpyF10VI GCNNNNNNNGC 5 cut(s) 273, 464, 575, 584, 968
HpyF3I CTNAG 1 cut(s) 235
HpySE526I ACGT 6 cut(s) 504, 606, 633, 770, 788, 818
Hsp92I GRCGYC 1 cut(s) 962
Hsp92II CATG 2 cut(s) 644, 970
KspI CCGCGG 1 cut(s) 588
Kzo9I GATC 3 cut(s) 119, 445, 841
LmnI GCTCC 3 cut(s) 365, 888, 992
Lsp1109I GCAGC 3 cut(s) 341, 344, 442
LweI GCATC 1 cut(s) 936
MaeI CTAG 3 cut(s) 513, 545, 1020
MaeII ACGT 6 cut(s) 504, 606, 633, 770, 788, 818
MaeIII GTNAC 7 cut(s) 71, 110, 623, 676, 766, 845, 896
MalI GATC 3 cut(s) 121, 447, 843
MboI GATC 3 cut(s) 119, 445, 841
MboII GAAGA 5 cut(s) 122, 219, 487, 932, 955
MflI RGATCY 1 cut(s) 119
MhlI GDGCHC 1 cut(s) 741
MlsI TGGCCA 1 cut(s) 527
MluCI AATT 3 cut(s) 383, 830, 953
MluNI TGGCCA 1 cut(s) 527
MlyI GAGTC 2 cut(s) 479, 720
MmeI TCCRAC 2 cut(s) 118, 158
Mox20I TGGCCA 1 cut(s) 527
MscI TGGCCA 1 cut(s) 527
MseI TTAA 2 cut(s) 938, 1010
Msp20I TGGCCA 1 cut(s) 527
MspA1I CMGCKG 2 cut(s) 455, 587
MspI CCGG 3 cut(s) 16, 138, 581
MspR9I CCNGG 1 cut(s) 491
MvaI CCWGG 1 cut(s) 491
MvnI CGCG 3 cut(s) 587, 686, 716
MwoI GCNNNNNNNGC 5 cut(s) 273, 464, 575, 584, 968
NcoI CCATGG 1 cut(s) 966
NdeII GATC 3 cut(s) 119, 445, 841
NlaIII CATG 2 cut(s) 644, 970
NlaIV GGNNCC 2 cut(s) 142, 739
NmuCI GTSAC 4 cut(s) 110, 676, 766, 845
PcsI WCGNNNNNNNCGW 2 cut(s) 612, 767
PfeI GAWTC 1 cut(s) 332
PflMI CCANNNNNTGG 1 cut(s) 646
PkrI GCNGC 6 cut(s) 356, 359, 457, 586, 589, 718
PleI GAGTC 2 cut(s) 479, 719
PpsI GAGTC 2 cut(s) 479, 719
Psp1406I AACGTT 2 cut(s) 633, 818
Psp6I CCWGG 1 cut(s) 489
PspFI CCCAGC 1 cut(s) 971
PspGI CCWGG 1 cut(s) 489
PspN4I GGNNCC 2 cut(s) 142, 739
PspOMI GGGCCC 1 cut(s) 737
PspPI GGNCC 3 cut(s) 140, 737, 738
PsuI RGATCY 1 cut(s) 119
RsaI GTAC 4 cut(s) 503, 605, 838, 861
RsaNI GTAC 4 cut(s) 502, 604, 837, 860
SacII CCGCGG 1 cut(s) 588
SaqAI TTAA 2 cut(s) 938, 1010
SatI GCNGC 6 cut(s) 355, 358, 456, 585, 588, 717
Sau3AI GATC 3 cut(s) 119, 445, 841
Sau96I GGNCC 3 cut(s) 140, 737, 738
SchI GAGTC 2 cut(s) 479, 720
ScrFI CCNGG 1 cut(s) 491
SduI GDGCHC 1 cut(s) 741
SfaNI GCATC 1 cut(s) 936
Sfr303I CCGCGG 1 cut(s) 588
SgrBI CCGCGG 1 cut(s) 588
SinI GGWCC 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 459
SmoI CTYRAG 1 cut(s) 459
Sse9I AATT 3 cut(s) 383, 830, 953
SspI AATATT 4 cut(s) 58, 200, 414, 801
SspMI CTAG 3 cut(s) 513, 545, 1020
StyD4I CCNGG 1 cut(s) 489
StyI CCWWGG 2 cut(s) 528, 966
TaaI ACNGT 5 cut(s) 71, 80, 682, 766, 997
TaiI ACGT 6 cut(s) 507, 609, 636, 773, 791, 821
TaqI TCGA 5 cut(s) 300, 366, 378, 600, 761
TasI AATT 3 cut(s) 383, 830, 953
TatI WGTACW 1 cut(s) 836
TauI GCSGC 3 cut(s) 587, 590, 719
TfiI GAWTC 1 cut(s) 332
Tru1I TTAA 2 cut(s) 938, 1010
Tru9I TTAA 2 cut(s) 938, 1010
TscAI CASTG 2 cut(s) 299, 1035
TseFI GTSAC 4 cut(s) 110, 676, 766, 845
TseI GCWGC 3 cut(s) 354, 357, 455
Tsp45I GTSAC 4 cut(s) 110, 676, 766, 845
TspDTI ATGAA 2 cut(s) 142, 933
TspGWI ACGGA 4 cut(s) 352, 380, 415, 423
TspRI CASTG 2 cut(s) 299, 1035
Van91I CCANNNNNTGG 1 cut(s) 646
VpaK11BI GGWCC 1 cut(s) 140
XspI CTAG 3 cut(s) 513, 545, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.