FvH4_2g37580

Arabidopsis protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016175
Physical Location & Seq
Forward (+)
27340888 .. 27342013
1126 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g37580.t1

Sequence Viewer

Length: 912 bp
ATGGTAGGCGTTTTCCGGCGCTCCCTTTCCTTCCCAAACAAACCAAATCCCAACCGTCCGTCCAAACCTACCTTGTCTCGTCACACCAGATCCATAAGTCTTCCATGCAGATCTCACCCATTGATCTCTCAGCTCAAGGACCACATCTCCGAACTTCAATCATGGTCCTCAACGTGTGATTCCTCCTCCGCTTGGCTCGTCGACGGCCTGACACGCCTGACGGAGCTCCACCACTGCCTCGACGACACTCTCCAGCTTCCACAGACCCAAGAAGCCCTCCGCCGCCAGCCACACTACTCATCCGTCGAGAATCTTCTAGAACAGTTCCTCCGCTTCGTCGACGTTTATGGAATCTTCCGTGGCTCCGTTTTGGCTCTCAAGGAGGAGCACTCGGCGGTGGAAGTGGCTATCAGGAAGAGAGACGAATCTAGGGTTGGTTTGTACGTGAAAGCTCGGAAGAGAGTGGCCAACGAAATGTCTAAGCTCGTGAACGAAGTTCGAATGTGTACTAGGTCATCCGAGCCTGTCTCTCCCAACACTGTCAACGTCGGAGATGTTGAGCTCGCCGCCGTTGTAAGCGACGTCGTTAAGGTGACGGTGATGGTATCTGTTGCACTCTTTAACGGAATTGCATTGTCTTTCGGGCCGCGAAAATCGACAACGTGGATGAATATGGGGATGATGAAGAAAGGCAAAGTTGATGATCAGGATCAAGGGATTCATGAATTCGAGCAAGTTGGGGTGAAGAGCTTGTTGGGTTTGAGAAAGAAAGGAGCCGAAGAGGTCAAATTTACTTTGAAGAAAATGAGGGAATTGGAGGCCTCCATTGAAGGAATTGAAACTTGCAGTGAAAGAGTTTTCAGGAGTTTGATTAACGCAAGGGTTGCGCTGCTCAACACTCTTACTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF241

Protein Analysis

304

Amino Acids

34.0

Weight (kDa)

9.4

Isoelectric Point (pI)

50.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BPS1 PF03087 69 - 299 3.4e-54 Protein BPS1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76240
fragaria_vesca FvH4_2g37580
malus_domestica MD08G1003400.v1.1
prunus_persica Prupe.1G355300_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0304151
rosa_laevigata RLG00000011010
rosa_multiflora Rmu_co8398387.1_g000001 Rmu_ssc0000218.1_g000007
rosa_roxburghii Rroxscaffold_7G00164020
rosa_rugosa Rorug06G0328000
rosa_samantha Rh6AG442100 Rh6BG460700 Rh6CG454300 Rh6DG441500
rosa_wichuraiana Rw6G038320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 585
AccI GTMKAC 2 cut(s) 201, 339
AccII CGCG 1 cut(s) 649
AciI CCGC 7 cut(s) 189, 280, 283, 331, 395, 567, 647
AclWI GGATC 2 cut(s) 84, 717
AcoI YGGCCR 1 cut(s) 465
AcsI RAATTY 2 cut(s) 725, 788
AcyI GRCGYC 1 cut(s) 582
AfaI GTAC 2 cut(s) 443, 508
AfiI CCNNNNNNNGG 1 cut(s) 192
AflIII ACRYGT 1 cut(s) 173
AgsI TTSAA 4 cut(s) 158, 799, 830, 839
AjuI GAANNNNNNNTTGG 4 cut(s) 417, 449, 737, 769
AloI GAACNNNNNNTCC 2 cut(s) 312, 344
AluBI AGCT 8 cut(s) 133, 226, 256, 452, 484, 562, 750, 909
AluI AGCT 8 cut(s) 133, 226, 256, 452, 484, 562, 750, 909
Alw21I GWGCWC 3 cut(s) 228, 390, 564
Alw26I GTCTC 3 cut(s) 81, 414, 532
AlwI GGATC 2 cut(s) 84, 717
AoxI GGCC 4 cut(s) 205, 465, 644, 819
ApeKI GCWGC 1 cut(s) 889
ApoI RAATTY 2 cut(s) 725, 788
AspLEI GCGC 2 cut(s) 21, 889
AspS9I GGNCC 3 cut(s) 139, 165, 644
AsuHPI GGTGA 4 cut(s) 107, 604, 610, 754
AsuII TTCGAA 1 cut(s) 499
AvaII GGWCC 2 cut(s) 139, 165
BalI TGGCCA 1 cut(s) 467
BanII GRGCYC 2 cut(s) 228, 564
BauI CACGAG 1 cut(s) 485
BbsI GAAGAC 1 cut(s) 92
Bbv12I GWGCWC 3 cut(s) 228, 390, 564
BbvI GCAGC 1 cut(s) 876
BccI CCATC 1 cut(s) 595
BceAI ACGGC 2 cut(s) 220, 554
BclI TGATCA 1 cut(s) 703
BcoDI GTCTC 3 cut(s) 81, 414, 532
BfaI CTAG 4 cut(s) 317, 429, 510, 906
BfoI RGCGCY 1 cut(s) 22
BglII AGATCT 1 cut(s) 110
BisI GCNGC 4 cut(s) 283, 567, 647, 890
BlsI GCNGC 4 cut(s) 284, 568, 648, 891
Bme18I GGWCC 2 cut(s) 139, 165
BmgT120I GGNCC 3 cut(s) 139, 165, 644
BmiI GGNNCC 2 cut(s) 364, 775
BpiI GAAGAC 1 cut(s) 92
BplI GAGNNNNNCTC 4 cut(s) 374, 406, 512, 544
BpmI CTGGAG 1 cut(s) 236
Bpu14I TTCGAA 1 cut(s) 499
BpuEI CTTGAG 2 cut(s) 119, 362
BsaAI YACGTR 1 cut(s) 445
BsaBI GATNNNNATC 1 cut(s) 708
BsaHI GRCGYC 1 cut(s) 582
BsaJI CCNNGG 1 cut(s) 358
BsaXI ACNNNNNCTCC 4 cut(s) 131, 161, 312, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 192
Bse8I GATNNNNATC 1 cut(s) 708
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 4 cut(s) 299, 515, 672, 684
BseJI GATNNNNATC 1 cut(s) 708
BseLI CCNNNNNNNGG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 143
BseRI GAGGAG 2 cut(s) 175, 398
BseXI GCAGC 1 cut(s) 876
Bsh1236I CGCG 1 cut(s) 649
BshFI GGCC 4 cut(s) 207, 467, 646, 821
BsiHKAI GWGCWC 3 cut(s) 228, 390, 564
BsiSI CCGG 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 192
BsmAI GTCTC 3 cut(s) 81, 414, 532
BsmBI CGTCTC 1 cut(s) 414
BsnI GGCC 4 cut(s) 207, 467, 646, 821
Bsp119I TTCGAA 1 cut(s) 499
Bsp1286I GDGCHC 3 cut(s) 228, 390, 564
Bsp143I GATC 5 cut(s) 89, 110, 123, 703, 709
BspACI CCGC 7 cut(s) 189, 280, 283, 331, 395, 567, 647
BspANI GGCC 4 cut(s) 207, 467, 646, 821
BspCNI CTCAG 1 cut(s) 142
BspFNI CGCG 1 cut(s) 649
BspHI TCATGA 1 cut(s) 721
BspLI GGNNCC 2 cut(s) 364, 775
BspPI GGATC 2 cut(s) 84, 717
BspQI GCTCTTC 1 cut(s) 740
BspT104I TTCGAA 1 cut(s) 499
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 5 cut(s) 89, 110, 123, 703, 709
BssNI GRCGYC 1 cut(s) 582
BssSI CACGAG 1 cut(s) 485
Bst2BI CACGAG 1 cut(s) 485
Bst4CI ACNGT 4 cut(s) 56, 324, 541, 598
Bst6I CTCTTC 4 cut(s) 410, 452, 740, 774
BstACI GRCGYC 1 cut(s) 582
BstAPI GCANNNNNTGC 1 cut(s) 884
BstBAI YACGTR 1 cut(s) 445
BstBI TTCGAA 1 cut(s) 499
BstC8I GCNNGC 2 cut(s) 287, 564
BstDEI CTNAG 2 cut(s) 129, 480
BstDSI CCRYGG 1 cut(s) 358
BstF5I GGATG 4 cut(s) 299, 515, 672, 684
BstFNI CGCG 1 cut(s) 649
BstH2I RGCGCY 1 cut(s) 22
BstHHI GCGC 2 cut(s) 21, 889
BstKTI GATC 5 cut(s) 92, 113, 126, 706, 712
BstMAI GTCTC 3 cut(s) 81, 414, 532
BstMBI GATC 5 cut(s) 89, 110, 123, 703, 709
BstMWI GCNNNNNNNGC 2 cut(s) 213, 884
BstUI CGCG 1 cut(s) 649
BstV1I GCAGC 1 cut(s) 876
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 2 cut(s) 89, 110
BstYI RGATCY 2 cut(s) 89, 110
BsuRI GGCC 4 cut(s) 207, 467, 646, 821
BtgI CCRYGG 1 cut(s) 358
BtsCI GGATG 4 cut(s) 299, 515, 672, 684
BtsI GCAGTG 2 cut(s) 232, 853
BtsIMutI CAGTG 3 cut(s) 232, 537, 853
Cac8I GCNNGC 2 cut(s) 287, 564
CciI TCATGA 1 cut(s) 721
CfoI GCGC 2 cut(s) 21, 889
Cfr13I GGNCC 3 cut(s) 139, 165, 644
Csp6I GTAC 2 cut(s) 442, 507
CviAII CATG 3 cut(s) 105, 162, 722
CviQI GTAC 2 cut(s) 442, 507
DdeI CTNAG 2 cut(s) 129, 480
DpnI GATC 5 cut(s) 91, 112, 125, 705, 711
DpnII GATC 5 cut(s) 89, 110, 123, 703, 709
EaeI YGGCCR 1 cut(s) 465
Eam1104I CTCTTC 4 cut(s) 410, 452, 740, 774
EarI CTCTTC 4 cut(s) 410, 452, 740, 774
EciI GGCGGA 1 cut(s) 269
Ecl136II GAGCTC 2 cut(s) 226, 562
Eco147I AGGCCT 1 cut(s) 821
Eco24I GRGCYC 2 cut(s) 228, 564
Eco47I GGWCC 2 cut(s) 139, 165
Eco53kI GAGCTC 2 cut(s) 226, 562
EcoICRI GAGCTC 2 cut(s) 226, 562
EcoRI GAATTC 1 cut(s) 725
EcoT38I GRGCYC 2 cut(s) 228, 564
Esp3I CGTCTC 1 cut(s) 414
FaeI CATG 3 cut(s) 108, 165, 725
FaiI YATR 6 cut(s) 95, 106, 163, 348, 674, 723
FatI CATG 3 cut(s) 104, 161, 721
FbaI TGATCA 1 cut(s) 703
FblI GTMKAC 2 cut(s) 201, 339
Fnu4HI GCNGC 4 cut(s) 283, 567, 647, 890
FokI GGATG 4 cut(s) 286, 502, 679, 691
FriOI GRGCYC 2 cut(s) 228, 564
Fsp4HI GCNGC 4 cut(s) 283, 567, 647, 890
FspBI CTAG 4 cut(s) 317, 429, 510, 906
GlaI GCGC 2 cut(s) 20, 888
GluI GCNGC 4 cut(s) 283, 567, 647, 890
GsuI CTGGAG 1 cut(s) 236
HaeII RGCGCY 1 cut(s) 22
HaeIII GGCC 4 cut(s) 207, 467, 646, 821
HapII CCGG 1 cut(s) 16
HhaI GCGC 2 cut(s) 21, 889
Hin1I GRCGYC 1 cut(s) 582
Hin1II CATG 3 cut(s) 108, 165, 725
Hin6I GCGC 2 cut(s) 19, 887
HinP1I GCGC 2 cut(s) 19, 887
HincII GTYRAC 3 cut(s) 202, 340, 544
HindII GTYRAC 3 cut(s) 202, 340, 544
HinfI GANTC 5 cut(s) 179, 310, 351, 425, 718
HpaII CCGG 1 cut(s) 16
HphI GGTGA 4 cut(s) 107, 604, 610, 754
Hpy166II GTNNAC 5 cut(s) 202, 340, 490, 507, 544
Hpy188I TCNGA 4 cut(s) 151, 456, 520, 551
Hpy188III TCNNGA 7 cut(s) 307, 317, 412, 487, 707, 722, 862
Hpy8I GTNNAC 5 cut(s) 202, 340, 490, 507, 544
Hpy99I CGWCG 9 cut(s) 203, 206, 245, 308, 341, 344, 551, 584, 587
HpyAV CCTTC 2 cut(s) 40, 824
HpyCH4III ACNGT 4 cut(s) 56, 324, 541, 598
HpyCH4IV ACGT 6 cut(s) 173, 342, 444, 546, 582, 662
HpyCH4V TGCA 4 cut(s) 108, 614, 632, 846
HpyF10VI GCNNNNNNNGC 2 cut(s) 213, 884
HpyF3I CTNAG 2 cut(s) 129, 480
HpySE526I ACGT 6 cut(s) 173, 342, 444, 546, 582, 662
Hsp92I GRCGYC 1 cut(s) 582
Hsp92II CATG 3 cut(s) 108, 165, 725
HspAI GCGC 2 cut(s) 19, 887
Ksp22I TGATCA 1 cut(s) 703
Kzo9I GATC 5 cut(s) 89, 110, 123, 703, 709
LguI GCTCTTC 1 cut(s) 740
LmnI GCTCC 6 cut(s) 26, 223, 231, 368, 385, 773
Lsp1109I GCAGC 1 cut(s) 876
MaeI CTAG 4 cut(s) 317, 429, 510, 906
MaeII ACGT 6 cut(s) 173, 342, 444, 546, 582, 662
MaeIII GTNAC 2 cut(s) 80, 592
MalI GATC 5 cut(s) 91, 112, 125, 705, 711
MboI GATC 5 cut(s) 89, 110, 123, 703, 709
MboII GAAGA 9 cut(s) 92, 305, 346, 427, 469, 697, 757, 791, 811
MflI RGATCY 2 cut(s) 89, 110
MhlI GDGCHC 3 cut(s) 228, 390, 564
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 5 cut(s) 627, 725, 788, 812, 834
MluNI TGGCCA 1 cut(s) 467
MmeI TCCRAC 1 cut(s) 529
Mox20I TGGCCA 1 cut(s) 467
MscI TGGCCA 1 cut(s) 467
MseI TTAA 3 cut(s) 588, 621, 873
Msp20I TGGCCA 1 cut(s) 467
MspI CCGG 1 cut(s) 16
MvnI CGCG 1 cut(s) 649
MwoI GCNNNNNNNGC 2 cut(s) 213, 884
NdeII GATC 5 cut(s) 89, 110, 123, 703, 709
NlaIII CATG 3 cut(s) 108, 165, 725
NlaIV GGNNCC 2 cut(s) 364, 775
NmeAIII GCCGAG 1 cut(s) 371
NmuCI GTSAC 2 cut(s) 80, 592
NspV TTCGAA 1 cut(s) 499
PagI TCATGA 1 cut(s) 721
PceI AGGCCT 1 cut(s) 821
PciSI GCTCTTC 1 cut(s) 740
PfeI GAWTC 5 cut(s) 179, 310, 351, 425, 718
PkrI GCNGC 4 cut(s) 284, 568, 648, 891
Ppu21I YACGTR 1 cut(s) 445
Psp124BI GAGCTC 2 cut(s) 228, 564
PspN4I GGNNCC 2 cut(s) 364, 775
PspPI GGNCC 3 cut(s) 139, 165, 644
PsuI RGATCY 2 cut(s) 89, 110
RsaI GTAC 2 cut(s) 443, 508
RsaNI GTAC 2 cut(s) 442, 507
SacI GAGCTC 2 cut(s) 228, 564
SalI GTCGAC 2 cut(s) 200, 338
SapI GCTCTTC 1 cut(s) 740
SaqAI TTAA 3 cut(s) 588, 621, 873
SatI GCNGC 4 cut(s) 283, 567, 647, 890
Sau3AI GATC 5 cut(s) 89, 110, 123, 703, 709
Sau96I GGNCC 3 cut(s) 139, 165, 644
SduI GDGCHC 3 cut(s) 228, 390, 564
SfuI TTCGAA 1 cut(s) 499
SgrDI CGTCGACG 2 cut(s) 200, 338
SinI GGWCC 2 cut(s) 139, 165
SmlI CTYRAG 2 cut(s) 134, 377
SmoI CTYRAG 2 cut(s) 134, 377
Sse9I AATT 5 cut(s) 627, 725, 788, 812, 834
SseBI AGGCCT 1 cut(s) 821
SsiI CCGC 7 cut(s) 189, 280, 283, 331, 395, 567, 647
SspMI CTAG 4 cut(s) 317, 429, 510, 906
SstI GAGCTC 2 cut(s) 228, 564
StuI AGGCCT 1 cut(s) 821
TaaI ACNGT 4 cut(s) 56, 324, 541, 598
TaiI ACGT 6 cut(s) 176, 345, 447, 549, 585, 665
TaqI TCGA 7 cut(s) 201, 240, 306, 339, 499, 656, 729
TasI AATT 5 cut(s) 627, 725, 788, 812, 834
TatI WGTACW 1 cut(s) 506
TauI GCSGC 3 cut(s) 285, 569, 649
TfiI GAWTC 5 cut(s) 179, 310, 351, 425, 718
Tru1I TTAA 3 cut(s) 588, 621, 873
Tru9I TTAA 3 cut(s) 588, 621, 873
TscAI CASTG 3 cut(s) 239, 544, 853
TseFI GTSAC 2 cut(s) 80, 592
TseI GCWGC 1 cut(s) 889
Tsp45I GTSAC 2 cut(s) 80, 592
TspDTI ATGAA 4 cut(s) 683, 698, 710, 738
TspGWI ACGGA 6 cut(s) 48, 236, 292, 347, 355, 639
TspRI CASTG 3 cut(s) 239, 544, 853
VpaK11BI GGWCC 2 cut(s) 139, 165
XapI RAATTY 2 cut(s) 725, 788
XbaI TCTAGA 1 cut(s) 316
XmiI GTMKAC 2 cut(s) 201, 339
XspI CTAG 4 cut(s) 317, 429, 510, 906
ZraI GACGTC 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.