Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008505

Physical Location & Seq

Genomic Coordinates Reverse (-)

29111948 .. 29114548

Gene Structure 2601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G77470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGACTGAGCTAACGTCGGCGATGGACATTGACGTAGACGAAATTCAGCCTCGCAAGCCGATAAACAAGGGCAAAGACGTCGTCGGTTTTGGACCTCCGCCGCAGAGTAAGGCGACGCCTTGGGTTGAGAAGTATCGACCTCAGTCGCTTGATGACGTGGCTGCACATCGTGACATTATTGATACGATTGATAGGCTGACCAATGAGAACAAATTGCCCCATCTTCTGTTGTATGGTCCTCCCGGTACTGGCAAAACATCCACCATTCTAGCTGTTGCCCGGAAACTATATGGACCAAAGTACCGGAATATGATTCTTGAACTGAACGCATCAGACGATAGAGGAATCGATGTTGTAAGGCAGCAGATTCAAGATTTCGCTAGCACGCAGAGTTTCTCTTTAGGAAAATCTTCGGTGAAGTTGGTTTTGCTAGATGAAGCAGATGCCATGACAAAAGATGCTCAGTTTGCCTTGCGTAGAGTGATTGAGAAATACACTAAGAGTACTAGGTTTGCGCTCATTGGAAACCATGTCAATAAGATCATCCCAGCTTTGCAGTCGAGATGTACTCGATTTAGATTTGCCCCTCTTGATGGAGTTCATATGAGTCAACGTCTTAAACATGTAATAGAAGCTGAAAGGCTTGTTGTAAGTGACTGTGGTTTGGCAGCTCTTGTACGGCTGAGCAATGGGGACATGAGAAAAGCATTGAACATTTTGCAGTCAACGCATATGGCGTCAAAGGAAATTACAGAGGAAGAGTCAAAGCAAATTACAGAGGAAGACGTTTACCTCTGCACCGGAAACCCATTGCCCAAGGACATTGAGCAGATATCTCACTGGCTTCTGAATAAACCATTTGATGAGTGCTACAAAGACGTTTCAGAAATCAAGACGAGAAAAGGACTTGCCATTGTTGATATCGTCAAAGAGATTACCTTGTTTATTTTTAAAATCAAGATGCCTTCCGCTGTCAGAGTTCAACTGATAAACGATTTGGCAGACATTGAGTACAGATTAAGTTTTGGTTGCAACGACAAACTGCAGCTTGGAGCTATCATTTCTACTTTCACACATGCCCGGTCTATCATTGTTGGTGCAGCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031348 GO:0031390 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051338 GO:0051347 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090329 GO:1900262 GO:1900264 GO:1901360 GO:1901576 GO:2000112 GO:2000278 GO:2000573

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 map03030 map03420 map03430

Pfam Domains

Protein Families

AAA Rep_fac_C

Protein Analysis

369

Amino Acids

41.37

Weight (kDa)

8.63

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad17	PF03215	36 - 109	3.2e-10	Rad17 P-loop domain
AAA	PF00004	75 - 196	9.3e-16	ATPase family associated with various cellular activities (AAA)
DNA_pol3_delta2	PF13177	117 - 197	3.9e-09	DNA polymerase III, delta subunit
AAA_lid_RFC1	PF25361	202 - 257	5.7e-06	RFC1-like, AAA+ ATPase lid domain
AAA_assoc_2	PF16193	214 - 267	1.9e-06	AAA C-terminal domain
Rep_fac_C	PF08542	270 - 355	4.9e-23	Replication factor C C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77470
fragaria_vesca	FvH4_2g27410 FvH4_2g27410 FvH4_2g27410
malus_domestica	MD00G1028800.v1.1 MD15G1345300.v1.1
prunus_persica	Prupe.1G493300_v2.0.a1 Prupe.1G493300_v2.0.a1 Prupe.1G493300_v2.0.a1
pyrus_communis	pycom08g13720 pycom15g30980
rosa_chinensis	RchiOBHm_Chr6g0296261
rosa_laevigata	RLG00000011712
rosa_multiflora	Rmu_sc0004708.1_g000011
rosa_roxburghii	Rroxscaffold_7G00171690 Rroxscaffold_7G00178370
rosa_rugosa	Rorug06G0260300.1 Rorug06G0260400.1
rosa_samantha	Rh6AG372100 Rh6BG380100 Rh6CG385500 Rh6DG372700
rosa_wichuraiana	Rw6G032440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	81
AccI	GTMKAC	1 cut(s)	36
AciI	CCGC	3 cut(s)	98, 101, 969
AcsI	RAATTY	1 cut(s)	42
AcyI	GRCGYC	3 cut(s)	78, 116, 737
AdeI	CACNNNGTG	1 cut(s)	170
AfaI	GTAC	6 cut(s)	247, 302, 505, 568, 678, 1013
AfiI	CCNNNNNNNGG	2 cut(s)	248, 593
AflIII	ACRYGT	1 cut(s)	622
AgsI	TTSAA	4 cut(s)	320, 371, 712, 983
AjiI	CACGTC	1 cut(s)	157
AluBI	AGCT	7 cut(s)	10, 272, 551, 635, 671, 1048, 1055
AluI	AGCT	7 cut(s)	10, 272, 551, 635, 671, 1048, 1055
ApeKI	GCWGC	5 cut(s)	161, 361, 668, 1045, 1100
ApoI	RAATTY	1 cut(s)	42
ArsI	GACNNNNNNTTYG	2 cut(s)	66, 98
Asp700I	GAANNNNTTC	1 cut(s)	409
AspLEI	GCGC	1 cut(s)	517
AspS9I	GGNCC	3 cut(s)	92, 236, 293
AsuC2I	CCSGG	3 cut(s)	243, 280, 1081
AsuHPI	GGTGA	1 cut(s)	427
AsuNHI	GCTAGC	1 cut(s)	380
AvaII	GGWCC	3 cut(s)	92, 236, 293
BaeI	ACNNNNGTAYC	2 cut(s)	284, 317
BbsI	GAAGAC	1 cut(s)	789
BbvI	GCAGC	4 cut(s)	148, 373, 680, 1057
BccI	CCATC	3 cut(s)	16, 228, 587
BceAI	ACGGC	1 cut(s)	695
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BcnI	CCSGG	3 cut(s)	243, 280, 1081
BfaI	CTAG	4 cut(s)	269, 381, 431, 507
BfmI	CTRYAG	1 cut(s)	1043
BisI	GCNGC	6 cut(s)	101, 162, 362, 669, 1046, 1101
BlpI	GCTNAGC	1 cut(s)	683
BlsI	GCNGC	6 cut(s)	102, 163, 363, 670, 1047, 1102
BmcAI	AGTACT	1 cut(s)	505
Bme1390I	CCNGG	3 cut(s)	243, 280, 1081
Bme18I	GGWCC	3 cut(s)	92, 236, 293
BmgBI	CACGTC	1 cut(s)	157
BmgT120I	GGNCC	3 cut(s)	92, 236, 293
BmrFI	CCNGG	3 cut(s)	243, 280, 1081
BmsI	GCATC	4 cut(s)	338, 433, 448, 951
BmtI	GCTAGC	1 cut(s)	384
BoxI	GACNNNNGTC	1 cut(s)	142
BpiI	GAAGAC	1 cut(s)	789
BplI	GAGNNNNNCTC	2 cut(s)	553, 585
Bpu1102I	GCTNAGC	1 cut(s)	683
BpuMI	CCSGG	3 cut(s)	243, 280, 1081
Bsa29I	ATCGAT	1 cut(s)	348
BsaHI	GRCGYC	3 cut(s)	78, 116, 737
BsaJI	CCNNGG	2 cut(s)	119, 816
BsaWI	WCCGGW	2 cut(s)	303, 800
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 593
Bse1I	ACTGG	2 cut(s)	253, 845
Bse3DI	GCAATG	2 cut(s)	694, 809
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	2 cut(s)	119, 816
BseGI	GGATG	2 cut(s)	257, 543
BseLI	CCNNNNNNNGG	2 cut(s)	248, 593
BseMI	GCAATG	2 cut(s)	694, 809
BseMII	CTCAG	3 cut(s)	155, 476, 674
BseNI	ACTGG	2 cut(s)	253, 845
BseXI	GCAGC	4 cut(s)	148, 373, 680, 1057
BseYI	CCCAGC	1 cut(s)	547
BsgI	GTGCAG	2 cut(s)	147, 781
BshVI	ATCGAT	1 cut(s)	348
BsiSI	CCGG	5 cut(s)	243, 280, 304, 801, 1081
BslFI	GGGAC	1 cut(s)	707
BslI	CCNNNNNNNGG	2 cut(s)	248, 593
BsmFI	GGGAC	1 cut(s)	707
Bsp143I	GATC	1 cut(s)	540
Bsp1720I	GCTNAGC	1 cut(s)	683
BspACI	CCGC	3 cut(s)	98, 101, 969
BspCNI	CTCAG	3 cut(s)	154, 475, 675
BspDI	ATCGAT	1 cut(s)	348
BspMAI	CTGCAG	1 cut(s)	1047
BspOI	GCTAGC	1 cut(s)	384
BsrDI	GCAATG	2 cut(s)	694, 809
BsrI	ACTGG	2 cut(s)	253, 845
BssECI	CCNNGG	2 cut(s)	119, 816
BssMI	GATC	1 cut(s)	540
BssNI	GRCGYC	3 cut(s)	78, 116, 737
BssT1I	CCWWGG	2 cut(s)	119, 816
Bst4CI	ACNGT	1 cut(s)	659
Bst6I	CTCTTC	1 cut(s)	753
BstACI	GRCGYC	3 cut(s)	78, 116, 737
BstC8I	GCNNGC	3 cut(s)	56, 382, 386
BstDEI	CTNAG	5 cut(s)	6, 141, 462, 498, 683
BstF5I	GGATG	2 cut(s)	257, 543
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	1 cut(s)	543
BstMBI	GATC	1 cut(s)	540
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 467, 727
BstNSI	RCATGY	2 cut(s)	626, 1079
BstPAI	GACNNNNGTC	1 cut(s)	142
BstSCI	CCNGG	3 cut(s)	241, 278, 1079
BstSFI	CTRYAG	1 cut(s)	1043
BstV1I	GCAGC	4 cut(s)	148, 373, 680, 1057
BstV2I	GAAGAC	1 cut(s)	789
Bsu15I	ATCGAT	1 cut(s)	348
BsuTUI	ATCGAT	1 cut(s)	348
BtgZI	GCGATG	1 cut(s)	35
BtrI	CACGTC	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	257, 543
BtsIMutI	CAGTG	1 cut(s)	838
Cac8I	GCNNGC	3 cut(s)	56, 382, 386
CfoI	GCGC	1 cut(s)	517
Cfr13I	GGNCC	3 cut(s)	92, 236, 293
ClaI	ATCGAT	1 cut(s)	348
CseI	GACGC	2 cut(s)	124, 726
Csp6I	GTAC	6 cut(s)	246, 301, 504, 567, 677, 1012
CviAII	CATG	5 cut(s)	448, 530, 623, 697, 1076
CviQI	GTAC	6 cut(s)	246, 301, 504, 567, 677, 1012
DdeI	CTNAG	5 cut(s)	6, 141, 462, 498, 683
DpnI	GATC	1 cut(s)	542
DpnII	GATC	1 cut(s)	540
DraI	TTTAAA	1 cut(s)	952
DraIII	CACNNNGTG	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	753
EarI	CTCTTC	1 cut(s)	753
EciI	GGCGGA	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	119, 816
Eco32I	GATATC	2 cut(s)	834, 922
Eco47I	GGWCC	3 cut(s)	92, 236, 293
EcoRV	GATATC	2 cut(s)	834, 922
EcoT14I	CCWWGG	2 cut(s)	119, 816
ErhI	CCWWGG	2 cut(s)	119, 816
FaeI	CATG	5 cut(s)	451, 533, 626, 700, 1079
FaqI	GGGAC	1 cut(s)	707
FatI	CATG	5 cut(s)	447, 529, 622, 696, 1075
FauNDI	CATATG	2 cut(s)	603, 732
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	6 cut(s)	101, 162, 362, 669, 1046, 1101
FokI	GGATG	2 cut(s)	244, 530
Fsp4HI	GCNGC	6 cut(s)	101, 162, 362, 669, 1046, 1101
FspBI	CTAG	4 cut(s)	269, 381, 431, 507
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	6 cut(s)	101, 162, 362, 669, 1046, 1101
GsaI	CCCAGC	1 cut(s)	551
HapII	CCGG	5 cut(s)	243, 280, 304, 801, 1081
HgaI	GACGC	2 cut(s)	124, 726
HhaI	GCGC	1 cut(s)	517
Hin1I	GRCGYC	3 cut(s)	78, 116, 737
Hin1II	CATG	5 cut(s)	451, 533, 626, 700, 1079
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HincII	GTYRAC	2 cut(s)	611, 726
HindII	GTYRAC	2 cut(s)	611, 726
HinfI	GANTC	5 cut(s)	313, 345, 367, 607, 761
HpaII	CCGG	5 cut(s)	243, 280, 304, 801, 1081
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	4 cut(s)	37, 611, 726, 790
Hpy188I	TCNGA	4 cut(s)	334, 849, 886, 977
Hpy188III	TCNNGA	7 cut(s)	170, 317, 371, 561, 590, 892, 958
Hpy8I	GTNNAC	4 cut(s)	37, 611, 726, 790
Hpy99I	CGWCG	4 cut(s)	19, 83, 86, 118
HpyAV	CCTTC	1 cut(s)	975
HpyCH4III	ACNGT	1 cut(s)	659
HpyCH4IV	ACGT	7 cut(s)	14, 33, 78, 156, 613, 786, 879
HpyCH4V	TGCA	7 cut(s)	164, 556, 721, 798, 1032, 1045, 1100
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 467, 727
HpyF3I	CTNAG	5 cut(s)	6, 141, 462, 498, 683
HpySE526I	ACGT	7 cut(s)	14, 33, 78, 156, 613, 786, 879
Hsp92I	GRCGYC	3 cut(s)	78, 116, 737
Hsp92II	CATG	5 cut(s)	451, 533, 626, 700, 1079
HspAI	GCGC	1 cut(s)	515
Kzo9I	GATC	1 cut(s)	540
LmnI	GCTCC	1 cut(s)	1052
LpnPI	CCDG	8 cut(s)	234, 256, 293, 317, 561, 814, 826, 1094
Lsp1109I	GCAGC	4 cut(s)	148, 373, 680, 1057
LweI	GCATC	4 cut(s)	338, 433, 448, 951
MaeI	CTAG	4 cut(s)	269, 381, 431, 507
MaeII	ACGT	7 cut(s)	14, 33, 78, 156, 613, 786, 879
MaeIII	GTNAC	2 cut(s)	170, 653
MalI	GATC	1 cut(s)	542
MboI	GATC	1 cut(s)	540
MboII	GAAGA	4 cut(s)	215, 402, 770, 794
MluCI	AATT	4 cut(s)	42, 212, 747, 771
MlyI	GAGTC	2 cut(s)	616, 770
MnlI	CCTC	9 cut(s)	60, 105, 150, 249, 335, 597, 748, 772, 803
MroXI	GAANNNNTTC	1 cut(s)	409
MseI	TTAA	3 cut(s)	618, 951, 1019
MspA1I	CMGCKG	1 cut(s)	971
MspI	CCGG	5 cut(s)	243, 280, 304, 801, 1081
MspR9I	CCNGG	3 cut(s)	243, 280, 1081
MwoI	GCNNNNNNNGC	3 cut(s)	55, 467, 727
NciI	CCSGG	3 cut(s)	243, 280, 1081
NdeI	CATATG	2 cut(s)	603, 732
NdeII	GATC	1 cut(s)	540
NheI	GCTAGC	1 cut(s)	380
NlaIII	CATG	5 cut(s)	451, 533, 626, 700, 1079
NmuCI	GTSAC	2 cut(s)	170, 653
NspI	RCATGY	2 cut(s)	626, 1079
PciI	ACATGT	1 cut(s)	622
PcsI	WCGNNNNNNNCGW	2 cut(s)	333, 734
PdmI	GAANNNNTTC	1 cut(s)	409
PfeI	GAWTC	3 cut(s)	313, 345, 367
PflFI	GACNNNGTC	1 cut(s)	80
PkrI	GCNGC	6 cut(s)	102, 163, 363, 670, 1047, 1102
PleI	GAGTC	2 cut(s)	615, 769
PpsI	GAGTC	2 cut(s)	615, 769
PscI	ACATGT	1 cut(s)	622
PshAI	GACNNNNGTC	1 cut(s)	142
PspFI	CCCAGC	1 cut(s)	547
PspPI	GGNCC	3 cut(s)	92, 236, 293
PstI	CTGCAG	1 cut(s)	1047
PsyI	GACNNNGTC	1 cut(s)	80
RsaI	GTAC	6 cut(s)	247, 302, 505, 568, 678, 1013
RsaNI	GTAC	6 cut(s)	246, 301, 504, 567, 677, 1012
SaqAI	TTAA	3 cut(s)	618, 951, 1019
SatI	GCNGC	6 cut(s)	101, 162, 362, 669, 1046, 1101
Sau3AI	GATC	1 cut(s)	540
Sau96I	GGNCC	3 cut(s)	92, 236, 293
ScaI	AGTACT	1 cut(s)	505
SchI	GAGTC	2 cut(s)	616, 770
ScrFI	CCNGG	3 cut(s)	243, 280, 1081
SfaNI	GCATC	4 cut(s)	338, 433, 448, 951
SfcI	CTRYAG	1 cut(s)	1043
SinI	GGWCC	3 cut(s)	92, 236, 293
Sse9I	AATT	4 cut(s)	42, 212, 747, 771
SsiI	CCGC	3 cut(s)	98, 101, 969
SspMI	CTAG	4 cut(s)	269, 381, 431, 507
StyD4I	CCNGG	3 cut(s)	241, 278, 1079
StyI	CCWWGG	2 cut(s)	119, 816
TaaI	ACNGT	1 cut(s)	659
TaiI	ACGT	7 cut(s)	17, 36, 81, 159, 616, 789, 882
TaqI	TCGA	4 cut(s)	136, 348, 560, 571
TasI	AATT	4 cut(s)	42, 212, 747, 771
TatI	WGTACW	3 cut(s)	503, 566, 1011
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	3 cut(s)	313, 345, 367
Tru1I	TTAA	3 cut(s)	618, 951, 1019
Tru9I	TTAA	3 cut(s)	618, 951, 1019
TscAI	CASTG	1 cut(s)	845
TseFI	GTSAC	2 cut(s)	170, 653
TseI	GCWGC	5 cut(s)	161, 361, 668, 1045, 1100
Tsp45I	GTSAC	2 cut(s)	170, 653
TspDTI	ATGAA	2 cut(s)	450, 590
TspRI	CASTG	1 cut(s)	845
Tth111I	GACNNNGTC	1 cut(s)	80
VpaK11BI	GGWCC	3 cut(s)	92, 236, 293
XapI	RAATTY	1 cut(s)	42
XceI	RCATGY	2 cut(s)	626, 1079
XmiI	GTMKAC	1 cut(s)	36
XmnI	GAANNNNTTC	1 cut(s)	409
XspI	CTAG	4 cut(s)	269, 381, 431, 507
ZraI	GACGTC	1 cut(s)	79
ZrmI	AGTACT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.