Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008505

Physical Location & Seq

Genomic Coordinates Forward (+)

56767478 .. 56769276

Gene Structure 1799 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG372700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCAGAGCTAACCACTCCCATGGACATCGACGGCGACGATAACAACCACTCTCTAAAACCCAACAACAAGGGCAAAAACGTCGCCGTTTCCGGCCCCTCCCACGGCAAAGCCACTCCCTGGGTCGAGAAGTACCGCCCTCAGTCCCTCGCCGACGTCGCCGCCCACCGCGACATTGTCGACACCATTGATAGGCTCACTAGTGAGAACAGACTGCCGCACCTCCTACTGTATGGCCCTCCTGGCACTGGAAAAACTTCCACGATTCTGGCCGTCGCACGCAAGCTCTATGGTGCACATTACCACAATATGATTCTCGAGTTGAATGCATCGGATGACAGGGGAATTGATGTTGTGAGGCAACAGATCCAGGATTTTGCCAGTACACAGAGTTTTTCGTTTGGGATTGACAATGCAAAGGCATCTGTAAAGTTGGTCTTACTGGATGAGGCAGATGCTATGACTAAGGATGCTCAGTTTGCTTTGAGACGAGTGATTGAGAAATACACAAAGAACACCAGATTTTCACTAATCTGTAACCATGTCAACAAGATTATTCCAGCTTTACAGTCAAGATGTACTCGTTTTCGGTTTGCTCCACTTGATTCTTTTCATGTAACGGAGCGACTCAAACATGTTATAGAAGCTGAAGGGCTTGATGTGTCTGAGAGTGGCTTAGCAGCAGTTGTACGGCTTAGCAATGGTGACATGAGAAAGGCGCTGAACATTCTGCAGTCAACTCATATGGCTTCACAGAACATAACAGAAGAAGCAGTATATCTTTGCACAGGAAATCCATTGCCTAAGGACATTGAGCAAATATCTCACTGGCTTTTGAATGAGTCATTTACAGAGAGTTTCAAACGTATTCACTACCTTATTCCTTTGTTATTCTTACAAGCAGGAAAAGTAGACATCCAAAAGTTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031348 GO:0031390 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051338 GO:0051347 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090329 GO:1900262 GO:1900264 GO:1901360 GO:1901576 GO:2000112 GO:2000278 GO:2000573

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 map03030 map03420 map03430

Pfam Domains

Protein Families

AAA Rep_fac_C

Protein Analysis

310

Amino Acids

34.69

Weight (kDa)

7.21

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad17	PF03215	38 - 178	1e-09	Rad17 P-loop domain
DNA_pol3_delta2	PF13177	60 - 201	1.7e-08	DNA polymerase III, delta subunit
AAA	PF00004	75 - 200	1e-15	ATPase family associated with various cellular activities (AAA)
AAA_lid_RFC1	PF25361	206 - 257	7.3e-06	RFC1-like, AAA+ ATPase lid domain
RCF1-5-like_lid	PF21960	209 - 248	1.7e-07	RCF1/5-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77470
fragaria_vesca	FvH4_2g27410 FvH4_2g27410 FvH4_2g27410
malus_domestica	MD00G1028800.v1.1 MD15G1345300.v1.1
prunus_persica	Prupe.1G493300_v2.0.a1 Prupe.1G493300_v2.0.a1 Prupe.1G493300_v2.0.a1
pyrus_communis	pycom08g13720 pycom15g30980
rosa_chinensis	RchiOBHm_Chr6g0296261
rosa_laevigata	RLG00000011712
rosa_multiflora	Rmu_sc0004708.1_g000011
rosa_roxburghii	Rroxscaffold_7G00171690 Rroxscaffold_7G00178370
rosa_rugosa	Rorug06G0260300.1 Rorug06G0260400.1
rosa_samantha	Rh6AG372100 Rh6BG380100 Rh6CG385500 Rh6DG372700
rosa_wichuraiana	Rw6G032440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	159
AccB7I	CCANNNNNTGG	1 cut(s)	120
AccI	GTMKAC	2 cut(s)	180, 912
AccII	CGCG	1 cut(s)	171
AciI	CCGC	4 cut(s)	136, 162, 169, 218
AclWI	GGATC	1 cut(s)	361
AcoI	YGGCCR	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	669
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	4 cut(s)	134, 385, 580, 690
AfiI	CCNNNNNNNGG	4 cut(s)	104, 120, 192, 248
AflIII	ACRYGT	1 cut(s)	634
AgsI	TTSAA	3 cut(s)	325, 838, 862
AhlI	ACTAGT	1 cut(s)	200
AjnI	CCWGG	3 cut(s)	119, 241, 369
AluBI	AGCT	4 cut(s)	10, 286, 563, 647
AluI	AGCT	4 cut(s)	10, 286, 563, 647
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	1 cut(s)	481
Alw44I	GTGCAC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	361
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	3 cut(s)	94, 235, 270
ApaLI	GTGCAC	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	680
Asp700I	GAANNNNTTC	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	721
AspS9I	GGNCC	2 cut(s)	95, 236
AsuHPI	GGTGA	1 cut(s)	716
AvaI	CYCGRG	1 cut(s)	317
AxyI	CCTNAGG	1 cut(s)	804
BaeGI	GKGCMC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	692
BceAI	ACGGC	5 cut(s)	49, 71, 121, 257, 707
BcgI	CGANNNNNNTGC	4 cut(s)	64, 98, 308, 342
BciT130I	CCWGG	3 cut(s)	121, 243, 371
BcoDI	GTCTC	1 cut(s)	481
BcuI	ACTAGT	1 cut(s)	200
BfaI	CTAG	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	731
BfoI	RGCGCY	1 cut(s)	722
BglI	GCCNNNNNGGC	1 cut(s)	243
BisI	GCNGC	3 cut(s)	162, 218, 681
BlpI	GCTNAGC	2 cut(s)	676, 695
BlsI	GCNGC	3 cut(s)	163, 219, 682
Bme1390I	CCNGG	3 cut(s)	121, 243, 371
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	2 cut(s)	95, 236
BmiI	GGNNCC	1 cut(s)	97
BmrFI	CCNGG	3 cut(s)	121, 243, 371
BmsI	GCATC	4 cut(s)	338, 431, 445, 460
Bpu1102I	GCTNAGC	2 cut(s)	676, 695
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	4 cut(s)	21, 103, 119, 120
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 120, 192, 248
Bse1I	ACTGG	4 cut(s)	253, 381, 447, 833
Bse21I	CCTNAGG	1 cut(s)	804
Bse3DI	GCAATG	2 cut(s)	706, 797
BseBI	CCWGG	3 cut(s)	121, 243, 371
BseDI	CCNNGG	4 cut(s)	21, 103, 119, 120
BseGI	GGATG	4 cut(s)	340, 451, 475, 915
BseLI	CCNNNNNNNGG	4 cut(s)	104, 120, 192, 248
BseMI	GCAATG	2 cut(s)	706, 797
BseMII	CTCAG	3 cut(s)	155, 488, 657
BseNI	ACTGG	4 cut(s)	253, 381, 447, 833
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	692
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	3 cut(s)	96, 237, 272
BsiHKAI	GWGCWC	1 cut(s)	298
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	4 cut(s)	104, 120, 192, 248
BsmAI	GTCTC	1 cut(s)	481
BsmBI	CGTCTC	1 cut(s)	481
BsmFI	GGGAC	1 cut(s)	130
BsmI	GAATGC	1 cut(s)	331
BsnI	GGCC	3 cut(s)	96, 237, 272
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	1 cut(s)	366
Bsp1720I	GCTNAGC	2 cut(s)	676, 695
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	4 cut(s)	136, 162, 169, 218
BspANI	GGCC	3 cut(s)	96, 237, 272
BspCNI	CTCAG	3 cut(s)	154, 487, 658
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	97
BspMAI	CTGCAG	1 cut(s)	735
BspPI	GGATC	1 cut(s)	361
BsrDI	GCAATG	2 cut(s)	706, 797
BsrI	ACTGG	4 cut(s)	253, 381, 447, 833
BssECI	CCNNGG	4 cut(s)	21, 103, 119, 120
BssMI	GATC	1 cut(s)	366
BssNI	GRCGYC	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	21
Bst2UI	CCWGG	3 cut(s)	121, 243, 371
Bst4CI	ACNGT	2 cut(s)	231, 570
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	2 cut(s)	280, 284
BstDEI	CTNAG	7 cut(s)	141, 465, 474, 666, 676, 695, 804
BstDSI	CCRYGG	2 cut(s)	21, 103
BstF5I	GGATG	4 cut(s)	340, 451, 475, 915
BstFNI	CGCG	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	722
BstHHI	GCGC	1 cut(s)	721
BstKTI	GATC	1 cut(s)	369
BstMAI	GTCTC	1 cut(s)	481
BstMBI	GATC	1 cut(s)	366
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 243, 479
BstNI	CCWGG	3 cut(s)	121, 243, 371
BstNSI	RCATGY	1 cut(s)	638
BstSCI	CCNGG	3 cut(s)	119, 241, 369
BstSFI	CTRYAG	1 cut(s)	731
BstSLI	GKGCMC	1 cut(s)	298
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	692
BstX2I	RGATCY	1 cut(s)	366
BstXI	CCANNNNNNTGG	2 cut(s)	22, 268
BstYI	RGATCY	1 cut(s)	366
Bsu36I	CCTNAGG	1 cut(s)	804
BsuRI	GGCC	3 cut(s)	96, 237, 272
BtgI	CCRYGG	2 cut(s)	21, 103
BtsCI	GGATG	4 cut(s)	340, 451, 475, 915
BtsIMutI	CAGTG	2 cut(s)	246, 826
Cac8I	GCNNGC	2 cut(s)	280, 284
CfoI	GCGC	1 cut(s)	721
Cfr13I	GGNCC	2 cut(s)	95, 236
Csp6I	GTAC	4 cut(s)	133, 384, 579, 689
CviAII	CATG	5 cut(s)	22, 542, 614, 635, 709
CviQI	GTAC	4 cut(s)	133, 384, 579, 689
DdeI	CTNAG	7 cut(s)	141, 465, 474, 666, 676, 695, 804
DpnI	GATC	1 cut(s)	368
DpnII	GATC	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	21
Eco57I	CTGAAG	1 cut(s)	669
Eco81I	CCTNAGG	1 cut(s)	804
Eco88I	CYCGRG	1 cut(s)	317
EcoRII	CCWGG	3 cut(s)	119, 241, 369
EcoT14I	CCWWGG	1 cut(s)	21
EcoT22I	ATGCAT	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	481
FaeI	CATG	5 cut(s)	25, 545, 617, 638, 712
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	5 cut(s)	21, 541, 613, 634, 708
FauNDI	CATATG	1 cut(s)	744
FblI	GTMKAC	2 cut(s)	180, 912
Fnu4HI	GCNGC	3 cut(s)	162, 218, 681
FokI	GGATG	4 cut(s)	347, 458, 482, 902
Fsp4HI	GCNGC	3 cut(s)	162, 218, 681
FspBI	CTAG	1 cut(s)	201
GlaI	GCGC	1 cut(s)	720
GluI	GCNGC	3 cut(s)	162, 218, 681
HaeII	RGCGCY	1 cut(s)	722
HaeIII	GGCC	3 cut(s)	96, 237, 272
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	721
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	5 cut(s)	25, 545, 617, 638, 712
Hin6I	GCGC	1 cut(s)	719
HinP1I	GCGC	1 cut(s)	719
HincII	GTYRAC	3 cut(s)	181, 547, 738
HindII	GTYRAC	3 cut(s)	181, 547, 738
HinfI	GANTC	5 cut(s)	265, 313, 605, 627, 842
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	716
Hpy166II	GTNNAC	6 cut(s)	181, 296, 386, 547, 738, 913
Hpy188I	TCNGA	2 cut(s)	334, 667
Hpy188III	TCNNGA	3 cut(s)	127, 317, 573
Hpy8I	GTNNAC	6 cut(s)	181, 296, 386, 547, 738, 913
Hpy99I	CGWCG	6 cut(s)	35, 41, 86, 158, 161, 278
HpyAV	CCTTC	1 cut(s)	644
HpyCH4III	ACNGT	2 cut(s)	231, 570
HpyCH4IV	ACGT	3 cut(s)	81, 156, 865
HpyCH4V	TGCA	5 cut(s)	296, 329, 416, 733, 786
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 243, 479
HpyF3I	CTNAG	7 cut(s)	141, 465, 474, 666, 676, 695, 804
HpySE526I	ACGT	3 cut(s)	81, 156, 865
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	5 cut(s)	25, 545, 617, 638, 712
HspAI	GCGC	1 cut(s)	719
Kzo9I	GATC	1 cut(s)	366
LmnI	GCTCC	2 cut(s)	601, 622
Lsp1109I	GCAGC	1 cut(s)	692
LweI	GCATC	4 cut(s)	338, 431, 445, 460
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	3 cut(s)	81, 156, 865
MaeIII	GTNAC	3 cut(s)	536, 616, 704
MalI	GATC	1 cut(s)	368
MboI	GATC	1 cut(s)	366
MboII	GAAGA	1 cut(s)	779
MflI	RGATCY	1 cut(s)	366
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	1 cut(s)	345
MlyI	GAGTC	2 cut(s)	621, 851
MnlI	CCTC	7 cut(s)	109, 150, 158, 233, 249, 351, 442
Mph1103I	ATGCAT	1 cut(s)	331
MroXI	GAANNNNTTC	1 cut(s)	256
MseI	TTAA	1 cut(s)	931
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	1 cut(s)	93
MspR9I	CCNGG	3 cut(s)	121, 243, 371
Mva1269I	GAATGC	1 cut(s)	331
MvaI	CCWGG	3 cut(s)	121, 243, 371
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	3 cut(s)	158, 243, 479
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	744
NdeII	GATC	1 cut(s)	366
NlaIII	CATG	5 cut(s)	25, 545, 617, 638, 712
NlaIV	GGNNCC	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	704
NsiI	ATGCAT	1 cut(s)	331
NspI	RCATGY	1 cut(s)	638
PaeR7I	CTCGAG	1 cut(s)	317
PasI	CCCWGGG	1 cut(s)	120
PciI	ACATGT	1 cut(s)	634
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PctI	GAATGC	1 cut(s)	331
PdmI	GAANNNNTTC	1 cut(s)	256
PfeI	GAWTC	3 cut(s)	265, 313, 605
PflFI	GACNNNGTC	1 cut(s)	176
PflMI	CCANNNNNTGG	1 cut(s)	120
PfoI	TCCNGGA	1 cut(s)	369
PkrI	GCNGC	3 cut(s)	163, 219, 682
PleI	GAGTC	2 cut(s)	621, 850
PpsI	GAGTC	2 cut(s)	621, 850
PscI	ACATGT	1 cut(s)	634
Psp6I	CCWGG	3 cut(s)	119, 241, 369
PspGI	CCWGG	3 cut(s)	119, 241, 369
PspN4I	GGNNCC	1 cut(s)	97
PspPI	GGNCC	2 cut(s)	95, 236
PstI	CTGCAG	1 cut(s)	735
PsuI	RGATCY	1 cut(s)	366
PsyI	GACNNNGTC	1 cut(s)	176
RsaI	GTAC	4 cut(s)	134, 385, 580, 690
RsaNI	GTAC	4 cut(s)	133, 384, 579, 689
RseI	CAYNNNNRTG	1 cut(s)	20
SalI	GTCGAC	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	931
SatI	GCNGC	3 cut(s)	162, 218, 681
Sau3AI	GATC	1 cut(s)	366
Sau96I	GGNCC	2 cut(s)	95, 236
SchI	GAGTC	2 cut(s)	621, 851
ScrFI	CCNGG	3 cut(s)	121, 243, 371
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	9 cut(s)	12, 84, 159, 225, 288, 565, 649, 868, 879
SfaNI	GCATC	4 cut(s)	338, 431, 445, 460
SfcI	CTRYAG	1 cut(s)	731
Sfr274I	CTCGAG	1 cut(s)	317
SlaI	CTCGAG	1 cut(s)	317
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SpeI	ACTAGT	1 cut(s)	200
Sse9I	AATT	1 cut(s)	345
SsiI	CCGC	4 cut(s)	136, 162, 169, 218
SspMI	CTAG	1 cut(s)	201
StyD4I	CCNGG	3 cut(s)	119, 241, 369
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	231, 570
TaiI	ACGT	3 cut(s)	84, 159, 868
TaqI	TCGA	4 cut(s)	30, 126, 180, 318
TasI	AATT	1 cut(s)	345
TatI	WGTACW	2 cut(s)	383, 578
TauI	GCSGC	2 cut(s)	164, 220
TfiI	GAWTC	3 cut(s)	265, 313, 605
Tru1I	TTAA	1 cut(s)	931
Tru9I	TTAA	1 cut(s)	931
TscAI	CASTG	2 cut(s)	253, 833
TseFI	GTSAC	1 cut(s)	704
TseI	GCWGC	1 cut(s)	680
Tsp45I	GTSAC	1 cut(s)	704
TspDTI	ATGAA	1 cut(s)	602
TspGWI	ACGGA	1 cut(s)	635
TspRI	CASTG	2 cut(s)	253, 833
Tth111I	GACNNNGTC	1 cut(s)	176
Van91I	CCANNNNNTGG	1 cut(s)	120
VneI	GTGCAC	1 cut(s)	294
XceI	RCATGY	1 cut(s)	638
XhoI	CTCGAG	1 cut(s)	317
XmiI	GTMKAC	2 cut(s)	180, 912
XmnI	GAANNNNTTC	1 cut(s)	256
XspI	CTAG	1 cut(s)	201
ZraI	GACGTC	1 cut(s)	157
Zsp2I	ATGCAT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.