Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008505

Physical Location & Seq

Genomic Coordinates Reverse (-)

40464199 .. 40468845

Gene Structure 4647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1345300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCGGAGCCAATCACTCTCATGGACATCGACGAAGATGACAATTCATCTCTAAAACCCAGCAACAACAAAGGCAAAAACGTCGCCGTCGCTGCCCCTTCCCCCGGCAAAGCCACGCCGTGGGTCGAGAAGTACCGCCCTCATTCCCTCGCGGACGTCGCTGCTCACCGCGACATTGTCGACACCATTGATAGGCTCACTACTGAGAACCGATTGCCACACCTCCTATTGTATGGTCCTCCTGGAACTGGCAAAACTTCAACGATACTTGCTGTGGCACGCAAGCTGTATGGAGCACGGTACCACAATATGATTTTGGAGTTGAATGCATCCGATGACAGGGGGATCGATGTTGTGCGACAACAGATTCAAGATTTTGCTAGCACACAGAGTTTCTCGTTTGGGGGTGAGAGTGCAAAGTCATCTGTCAAAATGGTCTTGCTTGATGAGGCAGATGCTATGACAAAGGATGCTCAATTTGCTTTGCGAAGAGTGATTGAGAAATACACAAAGAGCACTAGGTTCTCACTAATCTGCAATCATGTCAACAAGATTATTCCAGCATTACAATCCAGATGTACTCGTTTTCGATTTGCTCCACTTGAGGAGTTTCATGTCTCAGAGAGACTTAAACATGTTATAGAAGCTGAAGGGCTTGATGTGCCTGCGAGTGGTTTAGCGGCAGTTGTAGGGCTTAGCAATGGTGACATGAGAAAGGCTTTGAACATTTTGCAGTCAACTCATATGGCTTCACAGCAGATAACTGAAGAAGCAGTATATCTATGCACAGGAAATCCATTGCCCAAAGATATTGAGCAAATGTCTTACTGGCTTTTGAACGAATCATTTGCTGGGAGTTTCAAAAGTATTCAACCGTCTTATTTATTTATGTACTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031348 GO:0031390 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051338 GO:0051347 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090329 GO:1900262 GO:1900264 GO:1901360 GO:1901576 GO:2000112 GO:2000278 GO:2000573

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 map03030 map03420 map03430

Pfam Domains

Protein Families

AAA Rep_fac_C

Protein Analysis

300

Amino Acids

33.19

Weight (kDa)

6.46

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad17	PF03215	38 - 178	7e-10	Rad17 P-loop domain
DNA_pol3_delta2	PF13177	65 - 201	6.3e-09	DNA polymerase III, delta subunit
AAA	PF00004	75 - 200	3.2e-15	ATPase family associated with various cellular activities (AAA)
AAA_lid_RFC1	PF25361	206 - 256	7.8e-06	RFC1-like, AAA+ ATPase lid domain
RCF1-5-like_lid	PF21960	209 - 248	1.9e-06	RCF1/5-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77470
fragaria_vesca	FvH4_2g27410 FvH4_2g27410 FvH4_2g27410
malus_domestica	MD00G1028800.v1.1 MD15G1345300.v1.1
prunus_persica	Prupe.1G493300_v2.0.a1 Prupe.1G493300_v2.0.a1 Prupe.1G493300_v2.0.a1
pyrus_communis	pycom08g13720 pycom15g30980
rosa_chinensis	RchiOBHm_Chr6g0296261
rosa_laevigata	RLG00000011712
rosa_multiflora	Rmu_sc0004708.1_g000011
rosa_roxburghii	Rroxscaffold_7G00171690 Rroxscaffold_7G00178370
rosa_rugosa	Rorug06G0260300.1 Rorug06G0260400.1
rosa_samantha	Rh6AG372100 Rh6BG380100 Rh6CG385500 Rh6DG372700
rosa_wichuraiana	Rw6G032440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	159
Acc65I	GGTACC	1 cut(s)	300
AccB1I	GGYRCC	1 cut(s)	300
AccB7I	CCANNNNNTGG	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	180
AccII	CGCG	2 cut(s)	152, 171
AciI	CCGC	5 cut(s)	5, 136, 152, 169, 680
AclWI	GGATC	1 cut(s)	353
AcuI	CTGAAG	2 cut(s)	669, 786
AcyI	GRCGYC	1 cut(s)	156
AdeI	CACNNNGTG	1 cut(s)	120
AfaI	GTAC	4 cut(s)	134, 302, 580, 893
AfiI	CCNNNNNNNGG	6 cut(s)	104, 120, 192, 248, 339, 671
AflIII	ACRYGT	1 cut(s)	634
AgsI	TTSAA	7 cut(s)	261, 325, 371, 724, 838, 862, 872
AjnI	CCWGG	1 cut(s)	241
AluBI	AGCT	2 cut(s)	286, 647
AluI	AGCT	2 cut(s)	286, 647
Alw21I	GWGCWC	2 cut(s)	298, 518
Alw26I	GTCTC	2 cut(s)	619, 622
AlwI	GGATC	1 cut(s)	353
ApeKI	GCWGC	2 cut(s)	92, 161
Asp718I	GGTACC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	236
AsuC2I	CCSGG	1 cut(s)	105
AsuHPI	GGTGA	3 cut(s)	158, 419, 716
AsuNHI	GCTAGC	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	300
Bbv12I	GWGCWC	2 cut(s)	298, 518
BbvI	GCAGC	2 cut(s)	79, 148
BceAI	ACGGC	2 cut(s)	71, 103
BcgI	CGANNNNNNTGC	4 cut(s)	64, 98, 830, 864
BciT130I	CCWGG	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	105
BcoDI	GTCTC	2 cut(s)	619, 622
BfaI	CTAG	2 cut(s)	381, 519
BisI	GCNGC	3 cut(s)	93, 162, 681
BlpI	GCTNAGC	1 cut(s)	695
BlsI	GCNGC	3 cut(s)	94, 163, 682
Bme1390I	CCNGG	2 cut(s)	105, 243
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	2 cut(s)	9, 302
BmrFI	CCNGG	2 cut(s)	105, 243
BmsI	GCATC	3 cut(s)	338, 445, 460
BmtI	GCTAGC	1 cut(s)	384
Bpu1102I	GCTNAGC	1 cut(s)	695
BpuEI	CTTGAG	1 cut(s)	623
BpuMI	CCSGG	1 cut(s)	105
Bsa29I	ATCGAT	1 cut(s)	348
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	2 cut(s)	103, 119
Bsc4I	CCNNNNNNNGG	6 cut(s)	104, 120, 192, 248, 339, 671
Bse1I	ACTGG	2 cut(s)	253, 833
Bse3DI	GCAATG	2 cut(s)	706, 797
BseBI	CCWGG	1 cut(s)	243
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	2 cut(s)	103, 119
BseGI	GGATG	2 cut(s)	329, 475
BseLI	CCNNNNNNNGG	6 cut(s)	104, 120, 192, 248, 339, 671
BseMI	GCAATG	2 cut(s)	706, 797
BseMII	CTCAG	2 cut(s)	195, 633
BseNI	ACTGG	2 cut(s)	253, 833
BseRI	GAGGAG	1 cut(s)	620
BseXI	GCAGC	2 cut(s)	79, 148
BseYI	CCCAGC	2 cut(s)	59, 851
Bsh1236I	CGCG	2 cut(s)	152, 171
BshNI	GGYRCC	1 cut(s)	300
BshVI	ATCGAT	1 cut(s)	348
BsiHKAI	GWGCWC	2 cut(s)	298, 518
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	6 cut(s)	104, 120, 192, 248, 339, 671
BsmAI	GTCTC	2 cut(s)	619, 622
BsmI	GAATGC	1 cut(s)	331
Bsp1286I	GDGCHC	2 cut(s)	298, 518
Bsp143I	GATC	1 cut(s)	345
Bsp1720I	GCTNAGC	1 cut(s)	695
BspACI	CCGC	5 cut(s)	5, 136, 152, 169, 680
BspCNI	CTCAG	2 cut(s)	196, 632
BspDI	ATCGAT	1 cut(s)	348
BspFNI	CGCG	2 cut(s)	152, 171
BspLI	GGNNCC	2 cut(s)	9, 302
BspOI	GCTAGC	1 cut(s)	384
BspPI	GGATC	1 cut(s)	353
BspT107I	GGYRCC	1 cut(s)	300
BsrDI	GCAATG	2 cut(s)	706, 797
BsrI	ACTGG	2 cut(s)	253, 833
BssECI	CCNNGG	2 cut(s)	103, 119
BssMI	GATC	1 cut(s)	345
BssNI	GRCGYC	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	2 cut(s)	300, 876
Bst6I	CTCTTC	1 cut(s)	484
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	4 cut(s)	280, 284, 382, 666
BstDEI	CTNAG	3 cut(s)	204, 619, 695
BstDSI	CCRYGG	1 cut(s)	119
BstF5I	GGATG	2 cut(s)	329, 475
BstFNI	CGCG	2 cut(s)	152, 171
BstKTI	GATC	1 cut(s)	348
BstMAI	GTCTC	2 cut(s)	619, 622
BstMBI	GATC	1 cut(s)	345
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 158, 479, 661
BstNI	CCWGG	1 cut(s)	243
BstNSI	RCATGY	1 cut(s)	638
BstSCI	CCNGG	2 cut(s)	103, 241
BstUI	CGCG	2 cut(s)	152, 171
BstV1I	GCAGC	2 cut(s)	79, 148
Bsu15I	ATCGAT	1 cut(s)	348
BsuTUI	ATCGAT	1 cut(s)	348
BtgI	CCRYGG	1 cut(s)	119
BtsCI	GGATG	2 cut(s)	329, 475
Cac8I	GCNNGC	4 cut(s)	280, 284, 382, 666
Cfr13I	GGNCC	1 cut(s)	236
ClaI	ATCGAT	1 cut(s)	348
Csp6I	GTAC	4 cut(s)	133, 301, 579, 892
CviAII	CATG	5 cut(s)	22, 542, 614, 635, 709
CviQI	GTAC	4 cut(s)	133, 301, 579, 892
DdeI	CTNAG	3 cut(s)	204, 619, 695
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
DraIII	CACNNNGTG	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	484
EarI	CTCTTC	1 cut(s)	484
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	236
Eco57I	CTGAAG	2 cut(s)	669, 786
EcoRII	CCWGG	1 cut(s)	241
EcoT22I	ATGCAT	1 cut(s)	331
FaeI	CATG	5 cut(s)	25, 545, 617, 638, 712
FatI	CATG	5 cut(s)	21, 541, 613, 634, 708
FauNDI	CATATG	1 cut(s)	744
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	3 cut(s)	93, 162, 681
FokI	GGATG	2 cut(s)	316, 482
Fsp4HI	GCNGC	3 cut(s)	93, 162, 681
FspBI	CTAG	2 cut(s)	381, 519
GluI	GCNGC	3 cut(s)	93, 162, 681
GsaI	CCCAGC	2 cut(s)	63, 855
HapII	CCGG	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	5 cut(s)	25, 545, 617, 638, 712
HincII	GTYRAC	3 cut(s)	181, 547, 738
HindII	GTYRAC	3 cut(s)	181, 547, 738
HinfI	GANTC	2 cut(s)	367, 842
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	3 cut(s)	158, 419, 716
Hpy166II	GTNNAC	3 cut(s)	181, 547, 738
Hpy188I	TCNGA	2 cut(s)	334, 622
Hpy188III	TCNNGA	3 cut(s)	127, 371, 573
Hpy8I	GTNNAC	3 cut(s)	181, 547, 738
Hpy99I	CGWCG	4 cut(s)	35, 86, 92, 161
HpyAV	CCTTC	2 cut(s)	108, 644
HpyCH4III	ACNGT	2 cut(s)	300, 876
HpyCH4IV	ACGT	2 cut(s)	81, 156
HpyCH4V	TGCA	5 cut(s)	329, 416, 537, 733, 786
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 158, 479, 661
HpyF3I	CTNAG	3 cut(s)	204, 619, 695
HpySE526I	ACGT	2 cut(s)	81, 156
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	5 cut(s)	25, 545, 617, 638, 712
KpnI	GGTACC	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	345
LmnI	GCTCC	3 cut(s)	7, 293, 601
Lsp1109I	GCAGC	2 cut(s)	79, 148
LweI	GCATC	3 cut(s)	338, 445, 460
MaeI	CTAG	2 cut(s)	381, 519
MaeII	ACGT	2 cut(s)	81, 156
MaeIII	GTNAC	1 cut(s)	704
MalI	GATC	1 cut(s)	347
MboI	GATC	1 cut(s)	345
MboII	GAAGA	3 cut(s)	47, 501, 779
MhlI	GDGCHC	2 cut(s)	298, 518
MluCI	AATT	2 cut(s)	43, 476
MnlI	CCTC	6 cut(s)	150, 158, 233, 249, 442, 598
Mph1103I	ATGCAT	1 cut(s)	331
MseI	TTAA	1 cut(s)	630
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	2 cut(s)	105, 243
Mva1269I	GAATGC	1 cut(s)	331
MvaI	CCWGG	1 cut(s)	243
MvnI	CGCG	2 cut(s)	152, 171
MwoI	GCNNNNNNNGC	4 cut(s)	92, 158, 479, 661
NciI	CCSGG	1 cut(s)	105
NdeI	CATATG	1 cut(s)	744
NdeII	GATC	1 cut(s)	345
NheI	GCTAGC	1 cut(s)	380
NlaIII	CATG	5 cut(s)	25, 545, 617, 638, 712
NlaIV	GGNNCC	2 cut(s)	9, 302
NmuCI	GTSAC	1 cut(s)	704
NsiI	ATGCAT	1 cut(s)	331
NspI	RCATGY	1 cut(s)	638
PciI	ACATGT	1 cut(s)	634
PctI	GAATGC	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	367, 842
PflFI	GACNNNGTC	1 cut(s)	176
PflMI	CCANNNNNTGG	1 cut(s)	120
PfoI	TCCNGGA	1 cut(s)	241
PkrI	GCNGC	3 cut(s)	94, 163, 682
PscI	ACATGT	1 cut(s)	634
Psp6I	CCWGG	1 cut(s)	241
PspFI	CCCAGC	2 cut(s)	59, 851
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	2 cut(s)	9, 302
PspPI	GGNCC	1 cut(s)	236
PsyI	GACNNNGTC	1 cut(s)	176
RsaI	GTAC	4 cut(s)	134, 302, 580, 893
RsaNI	GTAC	4 cut(s)	133, 301, 579, 892
RseI	CAYNNNNRTG	1 cut(s)	20
SalI	GTCGAC	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	3 cut(s)	93, 162, 681
Sau3AI	GATC	1 cut(s)	345
Sau96I	GGNCC	1 cut(s)	236
ScrFI	CCNGG	2 cut(s)	105, 243
SduI	GDGCHC	2 cut(s)	298, 518
SetI	ASST	6 cut(s)	84, 159, 225, 288, 524, 649
SfaNI	GCATC	3 cut(s)	338, 445, 460
SinI	GGWCC	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
Sse9I	AATT	2 cut(s)	43, 476
SsiI	CCGC	5 cut(s)	5, 136, 152, 169, 680
SspMI	CTAG	2 cut(s)	381, 519
StyD4I	CCNGG	2 cut(s)	103, 241
TaaI	ACNGT	2 cut(s)	300, 876
TaiI	ACGT	2 cut(s)	84, 159
TaqI	TCGA	5 cut(s)	30, 126, 180, 348, 589
TasI	AATT	2 cut(s)	43, 476
TatI	WGTACW	2 cut(s)	578, 891
TauI	GCSGC	1 cut(s)	683
TfiI	GAWTC	2 cut(s)	367, 842
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TseFI	GTSAC	1 cut(s)	704
TseI	GCWGC	2 cut(s)	92, 161
Tsp45I	GTSAC	1 cut(s)	704
TspDTI	ATGAA	2 cut(s)	36, 602
Tth111I	GACNNNGTC	1 cut(s)	176
Van91I	CCANNNNNTGG	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	236
XceI	RCATGY	1 cut(s)	638
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	2 cut(s)	381, 519
ZraI	GACGTC	1 cut(s)	157
Zsp2I	ATGCAT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.