Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008505

Physical Location & Seq

Genomic Coordinates Reverse (-)

40995951 .. 41000567

Gene Structure 4617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G493300.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCGGAGGTGATCACTGTCATGGACATCGACGACGATAACAACCCATCTCCAAAACCCAACAACAACAACAACATGGGCAAAAACGTCGTTGTCGCCGCCGCCCCTTCCCAGGGCAAAGCTACGCCGTGGGTCGAGAAGTACCGTCCTCAGTCACTCGCAGATGTCGCCGCTCACCGCGACATTGTCGACACCATTGATAGGCTCACTAGTGAGAACAGATTGCCACACCTCTTGTTGTACGGCCCTCCTGGCACTGGCAAAACTTCAACCATTCTTGCTGTGGCACGCAAGCTCTATGGAGCACAATACCACAATATGATTCTGGAGTTGAATGCATCGGATGATAGGGGTATTGATGTTGTGCGACAACAGATCCAAGATTTTGCTAGCACACAGAGTTTCTCATTTGGGGGTGACAGTGCAAAGTCATCTGTAAAATTGGTCTTGCTGGATGAGGCTGACGCTATGACAAAGGATGCTCAATTTGCTTTGCGAAGAGTGATTGAGAAATACACAAGGAACACTAGGTTTTCACTAATCTGTAATCATGTCAACAAGATTATTCCAGCATTACAATCAAGATGTACTCGTTTTCGATTTGCTCCACTGGAGGAGTTTCATGTTTCAGAGAGACTCAAACATGTTATAGAAACTGAAGGGCTTGATGTGTCTGAGAGTGGCTTGGCGGCAGTTGTGCGGCTTAGCAATGGTGACATGAGAAAGGCTCTGAACATTTTGCAGTCAACTCATATGGCTTCACAGCAGCAGATAACAGAAGAAGCAGTATATCTTTGCACAGGAAATCCATTGCCCAAAGACATTGAGCAAATATCCTACTGGCTTTTGAATGAATCATTTGCTGAGAGTTTCAAACGAATATCTGATATGAAAACAACTAAAGGGTTGGCTTTGATAGATATTGTAAGAGAAGTGACCATGTTCGTTTTTAAGATTAAGATGCCACCAGTTGTTCGAGTTCAGTTGATTAATGATTTAGCTGACATAGAGTACAGGTTGACCTTTGGGTGCAATGATAGGTTGCAACTTGGATCATTGGTAGCTTCTTTTACGACAGCTCGATCTGCACTTGTTTCTGCTGCGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005663 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006275 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010604 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031348 GO:0031390 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045935 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0048585 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051338 GO:0051347 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090329 GO:1900262 GO:1900264 GO:1901360 GO:1901576 GO:2000112 GO:2000278 GO:2000573

KEGG Pathways

Metabolic & Signaling

ko03030 ko03420 ko03430 map03030 map03420 map03430

Pfam Domains

Protein Families

AAA Rep_fac_C

Protein Analysis

370

Amino Acids

41.07

Weight (kDa)

7.06

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77470
fragaria_vesca	FvH4_2g27410 FvH4_2g27410 FvH4_2g27410
malus_domestica	MD00G1028800.v1.1 MD15G1345300.v1.1
prunus_persica	Prupe.1G493300_v2.0.a1 Prupe.1G493300_v2.0.a1 Prupe.1G493300_v2.0.a1
pyrus_communis	pycom08g13720 pycom15g30980
rosa_chinensis	RchiOBHm_Chr6g0296261
rosa_laevigata	RLG00000011712
rosa_multiflora	Rmu_sc0004708.1_g000011
rosa_roxburghii	Rroxscaffold_7G00171690 Rroxscaffold_7G00178370
rosa_rugosa	Rorug06G0260300.1 Rorug06G0260400.1
rosa_samantha	Rh6AG372100 Rh6BG380100 Rh6CG385500 Rh6DG372700
rosa_wichuraiana	Rw6G032440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	173
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	1 cut(s)	180
AciI	CCGC	7 cut(s)	5, 99, 102, 171, 178, 689, 700
AclWI	GGATC	2 cut(s)	370, 1060
AcuI	CTGAAG	1 cut(s)	678
AfaI	GTAC	4 cut(s)	143, 242, 589, 1013
AfiI	CCNNNNNNNGG	4 cut(s)	112, 113, 201, 257
AflIII	ACRYGT	1 cut(s)	643
AgsI	TTSAA	4 cut(s)	270, 334, 850, 874
AhlI	ACTAGT	1 cut(s)	209
AjnI	CCWGG	2 cut(s)	111, 250
AluBI	AGCT	5 cut(s)	122, 295, 1001, 1064, 1079
AluI	AGCT	5 cut(s)	122, 295, 1001, 1064, 1079
Alw21I	GWGCWC	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	628
AlwI	GGATC	2 cut(s)	370, 1060
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	2 cut(s)	766, 1100
AseI	ATTAAT	1 cut(s)	990
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	4 cut(s)	22, 167, 428, 725
AsuNHI	GCTAGC	1 cut(s)	389
Bbv12I	GWGCWC	1 cut(s)	307
BbvI	GCAGC	2 cut(s)	778, 1087
BccI	CCATC	1 cut(s)	55
BceAI	ACGGC	2 cut(s)	112, 259
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BciT130I	CCWGG	2 cut(s)	113, 252
BclI	TGATCA	1 cut(s)	12
BcoDI	GTCTC	1 cut(s)	628
BcuI	ACTAGT	1 cut(s)	209
BfaI	CTAG	3 cut(s)	210, 390, 528
BglI	GCCNNNNNGGC	1 cut(s)	252
BisI	GCNGC	7 cut(s)	99, 102, 171, 690, 701, 767, 1101
BlpI	GCTNAGC	1 cut(s)	704
BlsI	GCNGC	7 cut(s)	100, 103, 172, 691, 702, 768, 1102
Bme1390I	CCNGG	2 cut(s)	113, 252
BmgT120I	GGNCC	1 cut(s)	245
BmrFI	CCNGG	2 cut(s)	113, 252
BmsI	GCATC	3 cut(s)	347, 469, 951
BmtI	GCTAGC	1 cut(s)	393
BplI	GAGNNNNNCTC	2 cut(s)	712, 744
BpmI	CTGGAG	2 cut(s)	347, 632
Bpu1102I	GCTNAGC	1 cut(s)	704
BsaJI	CCNNGG	3 cut(s)	111, 112, 128
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 113, 201, 257
Bse1I	ACTGG	4 cut(s)	262, 615, 845, 968
Bse3DI	GCAATG	3 cut(s)	715, 809, 1039
BseBI	CCWGG	2 cut(s)	113, 252
BseDI	CCNNGG	3 cut(s)	111, 112, 128
BseGI	GGATG	3 cut(s)	349, 460, 484
BseLI	CCNNNNNNNGG	4 cut(s)	112, 113, 201, 257
BseMI	GCAATG	3 cut(s)	715, 809, 1039
BseMII	CTCAG	3 cut(s)	164, 666, 855
BseNI	ACTGG	4 cut(s)	262, 615, 845, 968
BseRI	GAGGAG	1 cut(s)	629
BseXI	GCAGC	2 cut(s)	778, 1087
BsgI	GTGCAG	1 cut(s)	1071
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	307
BslI	CCNNNNNNNGG	4 cut(s)	112, 113, 201, 257
BsmAI	GTCTC	1 cut(s)	628
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp143I	GATC	4 cut(s)	12, 375, 1052, 1082
Bsp1720I	GCTNAGC	1 cut(s)	704
BspACI	CCGC	7 cut(s)	5, 99, 102, 171, 178, 689, 700
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	3 cut(s)	163, 667, 856
BspFNI	CGCG	1 cut(s)	180
BspOI	GCTAGC	1 cut(s)	393
BspPI	GGATC	2 cut(s)	370, 1060
BsrBI	CCGCTC	1 cut(s)	173
BsrDI	GCAATG	3 cut(s)	715, 809, 1039
BsrI	ACTGG	4 cut(s)	262, 615, 845, 968
BssECI	CCNNGG	3 cut(s)	111, 112, 128
BssMI	GATC	4 cut(s)	12, 375, 1052, 1082
Bst2UI	CCWGG	2 cut(s)	113, 252
Bst4CI	ACNGT	3 cut(s)	19, 146, 422
Bst6I	CTCTTC	1 cut(s)	493
BstC8I	GCNNGC	3 cut(s)	289, 293, 391
BstDEI	CTNAG	4 cut(s)	150, 675, 704, 864
BstDSI	CCRYGG	1 cut(s)	128
BstF5I	GGATG	3 cut(s)	349, 460, 484
BstFNI	CGCG	1 cut(s)	180
BstKTI	GATC	4 cut(s)	15, 378, 1055, 1085
BstMAI	GTCTC	1 cut(s)	628
BstMBI	GATC	4 cut(s)	12, 375, 1052, 1082
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 252, 488, 1085
BstNI	CCWGG	2 cut(s)	113, 252
BstNSI	RCATGY	1 cut(s)	647
BstSCI	CCNGG	2 cut(s)	111, 250
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	778, 1087
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	246
BtgI	CCRYGG	1 cut(s)	128
BtsCI	GGATG	3 cut(s)	349, 460, 484
BtsIMutI	CAGTG	4 cut(s)	15, 255, 427, 608
Cac8I	GCNNGC	3 cut(s)	289, 293, 391
Cfr13I	GGNCC	1 cut(s)	245
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	4 cut(s)	142, 241, 588, 1012
CspCI	CAANNNNNGTGG	2 cut(s)	216, 251
CviAII	CATG	7 cut(s)	22, 76, 551, 623, 644, 718, 940
CviQI	GTAC	4 cut(s)	142, 241, 588, 1012
DdeI	CTNAG	4 cut(s)	150, 675, 704, 864
DpnI	GATC	4 cut(s)	14, 377, 1054, 1084
DpnII	GATC	4 cut(s)	12, 375, 1052, 1082
Eam1104I	CTCTTC	1 cut(s)	493
EarI	CTCTTC	1 cut(s)	493
EciI	GGCGGA	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	678
EcoRII	CCWGG	2 cut(s)	111, 250
EcoT22I	ATGCAT	1 cut(s)	340
FaeI	CATG	7 cut(s)	25, 79, 554, 626, 647, 721, 943
FatI	CATG	7 cut(s)	21, 75, 550, 622, 643, 717, 939
FauNDI	CATATG	1 cut(s)	753
FbaI	TGATCA	1 cut(s)	12
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	7 cut(s)	99, 102, 171, 690, 701, 767, 1101
FokI	GGATG	3 cut(s)	356, 467, 491
Fsp4HI	GCNGC	7 cut(s)	99, 102, 171, 690, 701, 767, 1101
FspBI	CTAG	3 cut(s)	210, 390, 528
GluI	GCNGC	7 cut(s)	99, 102, 171, 690, 701, 767, 1101
GsuI	CTGGAG	2 cut(s)	347, 632
HaeIII	GGCC	1 cut(s)	246
HgaI	GACGC	1 cut(s)	473
Hin1II	CATG	7 cut(s)	25, 79, 554, 626, 647, 721, 943
HincII	GTYRAC	4 cut(s)	190, 556, 747, 1020
HindII	GTYRAC	4 cut(s)	190, 556, 747, 1020
HinfI	GANTC	3 cut(s)	322, 636, 854
HphI	GGTGA	4 cut(s)	22, 167, 428, 725
Hpy166II	GTNNAC	4 cut(s)	190, 556, 747, 1020
Hpy188I	TCNGA	5 cut(s)	343, 631, 676, 732, 886
Hpy188III	TCNNGA	3 cut(s)	136, 326, 582
Hpy8I	GTNNAC	4 cut(s)	190, 556, 747, 1020
Hpy99I	CGWCG	3 cut(s)	35, 38, 92
HpyAV	CCTTC	2 cut(s)	117, 653
HpyCH4III	ACNGT	3 cut(s)	19, 146, 422
HpyCH4IV	ACGT	1 cut(s)	87
HpyCH4V	TGCA	7 cut(s)	338, 425, 742, 798, 1032, 1045, 1088
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 252, 488, 1085
HpyF3I	CTNAG	4 cut(s)	150, 675, 704, 864
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	7 cut(s)	25, 79, 554, 626, 647, 721, 943
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	4 cut(s)	12, 375, 1052, 1082
LmnI	GCTCC	2 cut(s)	302, 610
Lsp1109I	GCAGC	2 cut(s)	778, 1087
LweI	GCATC	3 cut(s)	347, 469, 951
MaeI	CTAG	3 cut(s)	210, 390, 528
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	4 cut(s)	153, 416, 713, 934
MalI	GATC	4 cut(s)	14, 377, 1054, 1084
MbiI	CCGCTC	1 cut(s)	173
MboI	GATC	4 cut(s)	12, 375, 1052, 1082
MboII	GAAGA	2 cut(s)	510, 791
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	2 cut(s)	440, 485
MlyI	GAGTC	1 cut(s)	630
MnlI	CCTC	5 cut(s)	159, 242, 258, 451, 607
Mph1103I	ATGCAT	1 cut(s)	340
MseI	TTAA	3 cut(s)	951, 957, 990
MslI	CAYNNNNRTG	1 cut(s)	20
MspR9I	CCNGG	2 cut(s)	113, 252
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	2 cut(s)	113, 252
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	4 cut(s)	167, 252, 488, 1085
NdeI	CATATG	1 cut(s)	753
NdeII	GATC	4 cut(s)	12, 375, 1052, 1082
NheI	GCTAGC	1 cut(s)	389
NlaIII	CATG	7 cut(s)	25, 79, 554, 626, 647, 721, 943
NmuCI	GTSAC	4 cut(s)	153, 416, 713, 934
NsiI	ATGCAT	1 cut(s)	340
NspI	RCATGY	1 cut(s)	647
PasI	CCCWGGG	1 cut(s)	112
PciI	ACATGT	1 cut(s)	643
PctI	GAATGC	1 cut(s)	340
PfeI	GAWTC	2 cut(s)	322, 854
PflFI	GACNNNGTC	1 cut(s)	185
PkrI	GCNGC	7 cut(s)	100, 103, 172, 691, 702, 768, 1102
PleI	GAGTC	1 cut(s)	630
PpsI	GAGTC	1 cut(s)	630
PscI	ACATGT	1 cut(s)	643
PshBI	ATTAAT	1 cut(s)	990
Psp6I	CCWGG	2 cut(s)	111, 250
PspGI	CCWGG	2 cut(s)	111, 250
PspPI	GGNCC	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	375
PsyI	GACNNNGTC	1 cut(s)	185
RsaI	GTAC	4 cut(s)	143, 242, 589, 1013
RsaNI	GTAC	4 cut(s)	142, 241, 588, 1012
RseI	CAYNNNNRTG	1 cut(s)	20
SalI	GTCGAC	1 cut(s)	188
SaqAI	TTAA	3 cut(s)	951, 957, 990
SatI	GCNGC	7 cut(s)	99, 102, 171, 690, 701, 767, 1101
Sau3AI	GATC	4 cut(s)	12, 375, 1052, 1082
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	1 cut(s)	630
ScrFI	CCNGG	2 cut(s)	113, 252
SduI	GDGCHC	1 cut(s)	307
SfaNI	GCATC	3 cut(s)	347, 469, 951
SmiMI	CAYNNNNRTG	1 cut(s)	20
SpeI	ACTAGT	1 cut(s)	209
Sse9I	AATT	2 cut(s)	440, 485
SsiI	CCGC	7 cut(s)	5, 99, 102, 171, 178, 689, 700
SspMI	CTAG	3 cut(s)	210, 390, 528
StyD4I	CCNGG	2 cut(s)	111, 250
TaaI	ACNGT	3 cut(s)	19, 146, 422
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	6 cut(s)	30, 135, 189, 598, 976, 1081
TasI	AATT	2 cut(s)	440, 485
TatI	WGTACW	2 cut(s)	587, 1011
TauI	GCSGC	5 cut(s)	101, 104, 173, 692, 703
TfiI	GAWTC	2 cut(s)	322, 854
Tru1I	TTAA	3 cut(s)	951, 957, 990
Tru9I	TTAA	3 cut(s)	951, 957, 990
TscAI	CASTG	4 cut(s)	22, 262, 427, 615
TseFI	GTSAC	4 cut(s)	153, 416, 713, 934
TseI	GCWGC	2 cut(s)	766, 1100
Tsp45I	GTSAC	4 cut(s)	153, 416, 713, 934
TspDTI	ATGAA	3 cut(s)	611, 867, 905
TspRI	CASTG	4 cut(s)	22, 262, 427, 615
Tth111I	GACNNNGTC	1 cut(s)	185
VspI	ATTAAT	1 cut(s)	990
XceI	RCATGY	1 cut(s)	647
XcmI	CCANNNNNNNNNTGG	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	189
XspI	CTAG	3 cut(s)	210, 390, 528
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.