FvH4_2g27410

replication factor C

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
21768242 .. 21771242
3001 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g27410.t2

Sequence Viewer

Length: 1101 bp
ATGGCTGAGCTCATCACTCCCATGGACATCGACGGCGACGATACCAACCCCTCCTCTCTAAAACCCAACAACGACAAGGGCAAAAACGTCGCCGTTTCCGGCCCCATCCACGGCGAAGCCACTCCTTGGGTCGAGAAGTACCGCCCTCAGTCCCTCGCCGACGTCGCCGCCCACCGCGACATTGTCGACACCATTGACAGGTTGGCTAGTGAGAACAGATTGCCACACCTCCTGCTGTATGGCCCTCCTGGCACTGGGAAAACTTCGACAATTCTTGCCGTGGCACGCAAACTCTATGGTGCACAGTATCGTAAGATAATTCTCGAGCTGAATGCGTCGGATGACAGGGGAATTGATGTTGTGAGGCAACAGATCCAGAATTTTGCAAGCTCACAGGGTTTGTTTGGGGGGGAAACGGAAAAGGTACCTGTGAAGTTGGTCTTACTGGATGAGGCAGATGCTATGACTAAGGATGCTCAATTTGCTTTGAGAAGAGTGATTGAGAAATACACGAAGAACACTAGGTTTACACTGATCTGTAACCATGTCAACAAGATTATTCCTGCGTTACAGTCAAGATGCACACGTTTCCGGTTTGCTCCACTTGATTCTTTTCATGTAAAAGACCGACTAAAACATGTTATAGATGCTGAAGGGCTTGATGTATTTGAGAATGGCTTAGCAGCAGTTGTACGGCTGAGCAATGGTGACATGAGAAAGGCTCTGAACATTCTGCAGTCAACTCATATGGCTTCACAGAAGATAACAGAAGAAGCAGTATATCTTTGCACAGGAAATCCATTGCCTAAGGACATTGAGCAAATATCTCACTGGCTTTTGAACGAGTCATTTACAGAGGCTTTCAAACGAATTTCTGATATGAAGACAATAAAGGGATTGGCCCTGGTAGATATTGTAAGAGAAGTGACTATGTTTGTTTTTAAGATCAAGATGCCACCAGATGTTCGAGTTTTGTTAATCAATGATTTAGCTGACATAGAGTACAGGTTGAGCTTTGGGTGCAACGATAAATTGCAACTTGGATCAATAATTGCTACTTTTACGAAAGCTCGCTCTGCACTTGTTGCTGCTGCAAAGTAG

Protein Analysis

367

Amino Acids

40.72

Weight (kDa)

8.52

Isoelectric Point (pI)

29.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad17 PF03215 39 - 111 2.2e-09 Rad17 P-loop domain
DNA_pol3_delta2 PF13177 62 - 202 3.9e-08 DNA polymerase III, delta subunit
AAA PF00004 77 - 201 6.4e-16 ATPase family associated with various cellular activities (AAA)
RCF1-5-like_lid PF21960 210 - 249 5.4e-06 RCF1/5-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 165
Acc65I GGTACC 1 cut(s) 424
AccB1I GGYRCC 1 cut(s) 424
AccB7I CCANNNNNTGG 1 cut(s) 126
AccI GTMKAC 1 cut(s) 186
AccII CGCG 1 cut(s) 177
AciI CCGC 3 cut(s) 142, 168, 175
AclWI GGATC 2 cut(s) 367, 1051
AcsI RAATTY 2 cut(s) 379, 870
AcuI CTGAAG 1 cut(s) 672
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 4 cut(s) 140, 426, 693, 1004
AfiI CCNNNNNNNGG 4 cut(s) 110, 126, 198, 254
AflIII ACRYGT 2 cut(s) 584, 637
AgsI TTSAA 2 cut(s) 841, 865
AjnI CCWGG 2 cut(s) 247, 903
AluBI AGCT 6 cut(s) 10, 328, 390, 992, 1014, 1070
AluI AGCT 6 cut(s) 10, 328, 390, 992, 1014, 1070
Alw21I GWGCWC 2 cut(s) 12, 304
Alw44I GTGCAC 1 cut(s) 300
AlwI GGATC 2 cut(s) 367, 1051
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 3 cut(s) 100, 241, 900
ApaLI GTGCAC 1 cut(s) 300
ApeKI GCWGC 3 cut(s) 683, 1088, 1091
ApoI RAATTY 2 cut(s) 379, 870
Asp718I GGTACC 1 cut(s) 424
AspS9I GGNCC 3 cut(s) 101, 242, 901
AsuHPI GGTGA 1 cut(s) 719
AvaI CYCGRG 1 cut(s) 323
AxyI CCTNAGG 1 cut(s) 807
BaeGI GKGCMC 1 cut(s) 304
BanI GGYRCC 1 cut(s) 424
BanII GRGCYC 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 890
Bbv12I GWGCWC 2 cut(s) 12, 304
BbvI GCAGC 3 cut(s) 695, 1075, 1078
BccI CCATC 1 cut(s) 113
BceAI ACGGC 5 cut(s) 49, 77, 127, 263, 710
BcgI CGANNNNNNTGC 4 cut(s) 70, 104, 314, 348
BciT130I CCWGG 2 cut(s) 249, 905
BfaI CTAG 2 cut(s) 207, 522
BfmI CTRYAG 1 cut(s) 734
BglI GCCNNNNNGGC 1 cut(s) 249
BisI GCNGC 4 cut(s) 168, 684, 1089, 1092
BlpI GCTNAGC 3 cut(s) 6, 679, 698
BlsI GCNGC 4 cut(s) 169, 685, 1090, 1093
Bme1390I CCNGG 2 cut(s) 249, 905
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 3 cut(s) 101, 242, 901
BmiI GGNNCC 2 cut(s) 103, 426
BmrFI CCNGG 2 cut(s) 249, 905
BmrI ACTGGG 1 cut(s) 264
BmsI GCATC 5 cut(s) 448, 463, 569, 637, 942
BmuI ACTGGG 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 890
BplI GAGNNNNNCTC 2 cut(s) 706, 738
Bpu1102I GCTNAGC 3 cut(s) 6, 679, 698
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 5 cut(s) 21, 109, 125, 279, 903
BsaWI WCCGGW 1 cut(s) 591
Bsc4I CCNNNNNNNGG 4 cut(s) 110, 126, 198, 254
Bse1I ACTGG 3 cut(s) 259, 450, 836
Bse21I CCTNAGG 1 cut(s) 807
Bse3DI GCAATG 2 cut(s) 709, 800
BseBI CCWGG 2 cut(s) 249, 905
BseDI CCNNGG 5 cut(s) 21, 109, 125, 279, 903
BseGI GGATG 4 cut(s) 105, 346, 454, 478
BseLI CCNNNNNNNGG 4 cut(s) 110, 126, 198, 254
BseMI GCAATG 2 cut(s) 709, 800
BseMII CTCAG 2 cut(s) 161, 689
BseNI ACTGG 3 cut(s) 259, 450, 836
BseRI GAGGAG 1 cut(s) 43
BseSI GKGCMC 1 cut(s) 304
BseXI GCAGC 3 cut(s) 695, 1075, 1078
BsgI GTGCAG 1 cut(s) 1062
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 3 cut(s) 102, 243, 902
BshNI GGYRCC 1 cut(s) 424
BsiHKAI GWGCWC 2 cut(s) 12, 304
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 2 cut(s) 99, 592
BslFI GGGAC 1 cut(s) 136
BslI CCNNNNNNNGG 4 cut(s) 110, 126, 198, 254
BsmFI GGGAC 1 cut(s) 136
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 3 cut(s) 102, 243, 902
BsoBI CYCGRG 1 cut(s) 323
Bsp1286I GDGCHC 2 cut(s) 12, 304
Bsp143I GATC 4 cut(s) 372, 534, 945, 1043
Bsp1720I GCTNAGC 3 cut(s) 6, 679, 698
Bsp19I CCATGG 1 cut(s) 21
BspACI CCGC 3 cut(s) 142, 168, 175
BspANI GGCC 3 cut(s) 102, 243, 902
BspCNI CTCAG 2 cut(s) 160, 690
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 2 cut(s) 103, 426
BspMAI CTGCAG 1 cut(s) 738
BspPI GGATC 2 cut(s) 367, 1051
BspT107I GGYRCC 1 cut(s) 424
BsrDI GCAATG 2 cut(s) 709, 800
BsrI ACTGG 3 cut(s) 259, 450, 836
BssECI CCNNGG 5 cut(s) 21, 109, 125, 279, 903
BssMI GATC 4 cut(s) 372, 534, 945, 1043
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 2 cut(s) 21, 125
Bst2UI CCWGG 2 cut(s) 249, 905
Bst4CI ACNGT 2 cut(s) 306, 573
Bst6I CTCTTC 1 cut(s) 487
BstACI GRCGYC 1 cut(s) 162
BstAPI GCANNNNNTGC 1 cut(s) 1085
BstC8I GCNNGC 3 cut(s) 286, 388, 1072
BstDEI CTNAG 6 cut(s) 6, 147, 468, 679, 698, 807
BstDSI CCRYGG 3 cut(s) 21, 109, 279
BstF5I GGATG 4 cut(s) 105, 346, 454, 478
BstFNI CGCG 1 cut(s) 177
BstKTI GATC 4 cut(s) 375, 537, 948, 1046
BstMBI GATC 4 cut(s) 372, 534, 945, 1043
BstMWI GCNNNNNNNGC 6 cut(s) 164, 249, 482, 1020, 1076, 1085
BstNI CCWGG 2 cut(s) 249, 905
BstNSI RCATGY 1 cut(s) 641
BstSCI CCNGG 2 cut(s) 247, 903
BstSFI CTRYAG 1 cut(s) 734
BstSLI GKGCMC 1 cut(s) 304
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 3 cut(s) 695, 1075, 1078
BstV2I GAAGAC 1 cut(s) 890
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
Bsu36I CCTNAGG 1 cut(s) 807
BsuRI GGCC 3 cut(s) 102, 243, 902
BtgI CCRYGG 3 cut(s) 21, 109, 279
BtsCI GGATG 4 cut(s) 105, 346, 454, 478
BtsIMutI CAGTG 3 cut(s) 252, 530, 829
Cac8I GCNNGC 3 cut(s) 286, 388, 1072
Cfr13I GGNCC 3 cut(s) 101, 242, 901
CseI GACGC 1 cut(s) 324
Csp6I GTAC 4 cut(s) 139, 425, 692, 1003
CviAII CATG 5 cut(s) 22, 545, 617, 638, 712
CviQI GTAC 4 cut(s) 139, 425, 692, 1003
DdeI CTNAG 6 cut(s) 6, 147, 468, 679, 698, 807
DpnI GATC 4 cut(s) 374, 536, 947, 1045
DpnII GATC 4 cut(s) 372, 534, 945, 1043
Eam1104I CTCTTC 1 cut(s) 487
EarI CTCTTC 1 cut(s) 487
Ecl136II GAGCTC 1 cut(s) 10
Eco130I CCWWGG 2 cut(s) 21, 125
Eco24I GRGCYC 1 cut(s) 12
Eco53kI GAGCTC 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 672
Eco81I CCTNAGG 1 cut(s) 807
Eco88I CYCGRG 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 10
EcoRII CCWGG 2 cut(s) 247, 903
EcoT14I CCWWGG 2 cut(s) 21, 125
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 2 cut(s) 21, 125
FaeI CATG 5 cut(s) 25, 548, 620, 641, 715
FalI AAGNNNNNCTT 2 cut(s) 425, 457
FaqI GGGAC 1 cut(s) 136
FatI CATG 5 cut(s) 21, 544, 616, 637, 711
FauNDI CATATG 1 cut(s) 747
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 4 cut(s) 168, 684, 1089, 1092
FokI GGATG 4 cut(s) 92, 353, 461, 485
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 4 cut(s) 168, 684, 1089, 1092
FspBI CTAG 2 cut(s) 207, 522
GluI GCNGC 4 cut(s) 168, 684, 1089, 1092
HaeIII GGCC 3 cut(s) 102, 243, 902
HapII CCGG 2 cut(s) 99, 592
HgaI GACGC 1 cut(s) 324
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 5 cut(s) 25, 548, 620, 641, 715
HincII GTYRAC 3 cut(s) 187, 550, 741
HindII GTYRAC 3 cut(s) 187, 550, 741
HinfI GANTC 2 cut(s) 608, 845
HpaII CCGG 2 cut(s) 99, 592
HphI GGTGA 1 cut(s) 719
Hpy166II GTNNAC 5 cut(s) 187, 302, 528, 550, 741
Hpy188I TCNGA 3 cut(s) 340, 726, 877
Hpy188III TCNNGA 5 cut(s) 133, 323, 376, 576, 949
Hpy8I GTNNAC 5 cut(s) 187, 302, 528, 550, 741
Hpy99I CGWCG 6 cut(s) 35, 41, 92, 164, 167, 340
HpyAV CCTTC 1 cut(s) 647
HpyCH4III ACNGT 2 cut(s) 306, 573
HpyCH4IV ACGT 3 cut(s) 87, 162, 586
HpyCH4V TGCA 9 cut(s) 302, 386, 582, 736, 789, 1023, 1036, 1079, 1094
HpyF10VI GCNNNNNNNGC 6 cut(s) 164, 249, 482, 1020, 1076, 1085
HpyF3I CTNAG 6 cut(s) 6, 147, 468, 679, 698, 807
HpySE526I ACGT 3 cut(s) 87, 162, 586
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 5 cut(s) 25, 548, 620, 641, 715
KpnI GGTACC 1 cut(s) 428
Kzo9I GATC 4 cut(s) 372, 534, 945, 1043
LmnI GCTCC 1 cut(s) 604
Lsp1109I GCAGC 3 cut(s) 695, 1075, 1078
LweI GCATC 5 cut(s) 448, 463, 569, 637, 942
MaeI CTAG 2 cut(s) 207, 522
MaeII ACGT 3 cut(s) 87, 162, 586
MaeIII GTNAC 4 cut(s) 539, 567, 707, 925
MalI GATC 4 cut(s) 374, 536, 947, 1045
MboI GATC 4 cut(s) 372, 534, 945, 1043
MboII GAAGA 5 cut(s) 504, 526, 772, 782, 895
MflI RGATCY 1 cut(s) 372
MhlI GDGCHC 2 cut(s) 12, 304
MluCI AATT 8 cut(s) 270, 318, 351, 379, 479, 870, 1031, 1050
MlyI GAGTC 1 cut(s) 854
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 9 cut(s) 61, 64, 156, 164, 239, 255, 357, 445, 850
MseI TTAA 2 cut(s) 942, 977
MslI CAYNNNNRTG 1 cut(s) 20
MspI CCGG 2 cut(s) 99, 592
MspR9I CCNGG 2 cut(s) 249, 905
Mva1269I GAATGC 1 cut(s) 337
MvaI CCWGG 2 cut(s) 249, 905
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 6 cut(s) 164, 249, 482, 1020, 1076, 1085
NcoI CCATGG 1 cut(s) 21
NdeI CATATG 1 cut(s) 747
NdeII GATC 4 cut(s) 372, 534, 945, 1043
NlaIII CATG 5 cut(s) 25, 548, 620, 641, 715
NlaIV GGNNCC 2 cut(s) 103, 426
NmuCI GTSAC 2 cut(s) 707, 925
NspI RCATGY 1 cut(s) 641
PaeR7I CTCGAG 1 cut(s) 323
PciI ACATGT 1 cut(s) 637
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PctI GAATGC 1 cut(s) 337
PfeI GAWTC 1 cut(s) 608
PflFI GACNNNGTC 1 cut(s) 182
PflMI CCANNNNNTGG 1 cut(s) 126
PkrI GCNGC 4 cut(s) 169, 685, 1090, 1093
PleI GAGTC 1 cut(s) 853
PpsI GAGTC 1 cut(s) 853
PscI ACATGT 1 cut(s) 637
Psp124BI GAGCTC 1 cut(s) 12
Psp6I CCWGG 2 cut(s) 247, 903
PspGI CCWGG 2 cut(s) 247, 903
PspN4I GGNNCC 2 cut(s) 103, 426
PspPI GGNCC 3 cut(s) 101, 242, 901
PstI CTGCAG 1 cut(s) 738
PsuI RGATCY 1 cut(s) 372
PsyI GACNNNGTC 1 cut(s) 182
RsaI GTAC 4 cut(s) 140, 426, 693, 1004
RsaNI GTAC 4 cut(s) 139, 425, 692, 1003
RseI CAYNNNNRTG 1 cut(s) 20
SacI GAGCTC 1 cut(s) 12
SalI GTCGAC 1 cut(s) 185
SaqAI TTAA 2 cut(s) 942, 977
SatI GCNGC 4 cut(s) 168, 684, 1089, 1092
Sau3AI GATC 4 cut(s) 372, 534, 945, 1043
Sau96I GGNCC 3 cut(s) 101, 242, 901
SchI GAGTC 1 cut(s) 854
ScrFI CCNGG 2 cut(s) 249, 905
SduI GDGCHC 2 cut(s) 12, 304
SfaNI GCATC 5 cut(s) 448, 463, 569, 637, 942
SfcI CTRYAG 1 cut(s) 734
Sfr274I CTCGAG 1 cut(s) 323
SlaI CTCGAG 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 8 cut(s) 270, 318, 351, 379, 479, 870, 1031, 1050
SsiI CCGC 3 cut(s) 142, 168, 175
SspMI CTAG 2 cut(s) 207, 522
SstI GAGCTC 1 cut(s) 12
StyD4I CCNGG 2 cut(s) 247, 903
StyI CCWWGG 2 cut(s) 21, 125
TaaI ACNGT 2 cut(s) 306, 573
TaiI ACGT 3 cut(s) 90, 165, 589
TaqI TCGA 6 cut(s) 30, 132, 186, 266, 324, 967
TaqII GACCGA 1 cut(s) 642
TasI AATT 8 cut(s) 270, 318, 351, 379, 479, 870, 1031, 1050
TatI WGTACW 1 cut(s) 1002
TauI GCSGC 1 cut(s) 170
TfiI GAWTC 1 cut(s) 608
Tru1I TTAA 2 cut(s) 942, 977
Tru9I TTAA 2 cut(s) 942, 977
TscAI CASTG 3 cut(s) 259, 537, 836
TseFI GTSAC 2 cut(s) 707, 925
TseI GCWGC 3 cut(s) 683, 1088, 1091
Tsp45I GTSAC 2 cut(s) 707, 925
TspDTI ATGAA 2 cut(s) 605, 896
TspGWI ACGGA 1 cut(s) 431
TspRI CASTG 3 cut(s) 259, 537, 836
Tth111I GACNNNGTC 1 cut(s) 182
Van91I CCANNNNNTGG 1 cut(s) 126
VneI GTGCAC 1 cut(s) 300
XapI RAATTY 2 cut(s) 379, 870
XceI RCATGY 1 cut(s) 641
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XhoI CTCGAG 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 2 cut(s) 207, 522
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.