AT1G79120

Protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013520
Physical Location & Seq
Reverse (-)
29764089 .. 29768793
4705 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79120.1

Sequence Viewer

Length: 1242 bp
ATGTCTAAACCGTTATTATACAGAAGGTCTTCGATCTTTTCCGTTATTTTGAGAATTCATAAGCTTAGAGAAACTGAAAGTTTCGTGTTGTTTCCTGGAGAATCATCTAGTAGATTGCAATGGACGTTTGTTCAGGTGAGACACAAGTCTGGTGGAGGAGGATGGAGACCTAAGCAGAAAGTATATCATAGAGTTCATGACCTTGATAAAGCAATTGACTTGAACAAGAAACCATCTCTGATACTTCAGTTGAAATCTATTATCCAGGCGCAGAAACATGGAAGCCTTCTTCTTAGAGATCTTGAGAAGCATGTTGGGTTTGTTCACAAGTGGAACTTAATGGCTGCCATTGAGAAGTACCCTACGATATTTTATGTTGGAGGTGGACACAAAGAACCTCCTTTCGTTATGCTGACTGAGAAAGCTAAAAAGATTGCAGCTGAGGAAAGTGAAGCTACAGAGTCAATGGAACCTATTCTGGTTAATAATCTTAGGAAGTTATTGATGATGTCTGTTGATTGTCGAGTTCCTTTGGAGAAGGTTGAGTTTATTCAATCTGCAATGGGTTTGCCTCAAGATTTTAAGAGTACATTGATCCCTAAGTACACTGAATTTTTCTCTTTGAAGGTTATCAATGGAAAAGTTAATCTTGTTTTAGAGAATTGGGATTCTTCACTGGCAATCACTGCACGAGAGGATAGGTTATCCCGTGAAGGATTCTCCGAGTCAGTTGGGGACAGAAAGAGGGTCAGGATCACAAAGGATGGCAATTTCTTGGGACGAAATGCGTTTAAGATTTCTTTTCCTCCTGGTTTTAGGCCTAACGCTAGTTATTTAGAGGAATTTGAGAAGTGGCAGAAAATGGAATTCCCATCTCCTTATCTTAATGCGAGAAGATTTGATGCTGCAGATCCTAAAGCTAGGAAACGAGTTGTAGCTGTGCTTCATGAACTGCTCAGTTTAACAATGGAGAAAAGAGTGACATGCGCTCAATTGGATGCATTCCACTCTGAGTATCTGCTTCCATCAAGACTAATACTTTGCTTGATAAAGCATCAAGGGATCTTCTACATTACTAACAAAGGAGCAAGGGGTACGGTATTTCTCAAAGATGCTTATGCTGGTTCTAATTTGATTGAGAAATGCCCATTGCTATTGTTCCATGATAGATTTGTTGCACTCTGTGGTCGGAAAGAAGTCAATTTATCTAATGAAATGCAGTCTTCAAGTGTTTTCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

413

Amino Acids

47.32

Weight (kDa)

9.67

Isoelectric Point (pI)

51.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 63 - 398 9.2e-103 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013520)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79120 AT1G79120
fragaria_vesca FvH4_5g24801
malus_domestica MD05G1220600.v1.1 MD10G1203000.v1.1
prunus_persica Prupe.4G139300_v2.0.a1
pyrus_communis pycom05g20410 pycom10g17360
rosa_chinensis RchiOBHm_Chr7g0215141
rosa_laevigata RLG00000002690
rosa_multiflora Rmu_sc0005476.1_g000003
rosa_roxburghii Rroxscaffold_3G00244590
rosa_rugosa Rorug07G0150200
rosa_samantha Rh7BG278800 Rh7CG307000 Rh7DG290600 Rh7DG397500
rosa_wichuraiana Rw7G024490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 589, 761, 905, 1070
AcsI RAATTY 4 cut(s) 54, 611, 842, 866
AcuI CTGAAG 1 cut(s) 230
AdeI CACNNNGTG 1 cut(s) 1184
AfaI GTAC 4 cut(s) 359, 589, 605, 1096
AgsI TTSAA 5 cut(s) 223, 253, 554, 625, 1227
AjnI CCWGG 3 cut(s) 94, 264, 808
AluBI AGCT 6 cut(s) 64, 425, 440, 455, 920, 938
AluI AGCT 6 cut(s) 64, 425, 440, 455, 920, 938
Alw26I GTCTC 2 cut(s) 133, 160
AlwI GGATC 4 cut(s) 589, 761, 905, 1070
AoxI GGCC 1 cut(s) 818
ApeKI GCWGC 3 cut(s) 344, 437, 905
ApoI RAATTY 4 cut(s) 54, 611, 842, 866
ArsI GACNNNNNNTTYG 2 cut(s) 1023, 1055
Asp700I GAANNNNTTC 2 cut(s) 28, 474
AspLEI GCGC 2 cut(s) 271, 989
AsuHPI GGTGA 1 cut(s) 148
BaeI ACNNNNGTAYC 2 cut(s) 233, 266
BarI GAAGNNNNNNTAC 2 cut(s) 927, 959
BauI CACGAG 1 cut(s) 690
BbsI GAAGAC 2 cut(s) 21, 1215
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 3 cut(s) 331, 449, 892
BccI CCATC 5 cut(s) 156, 241, 758, 880, 1033
BciT130I CCWGG 3 cut(s) 96, 266, 810
BcoDI GTCTC 2 cut(s) 133, 160
BfaI CTAG 3 cut(s) 108, 828, 921
BfmI CTRYAG 2 cut(s) 456, 906
BglII AGATCT 1 cut(s) 298
BisI GCNGC 3 cut(s) 345, 438, 906
BlsI GCNGC 3 cut(s) 346, 439, 907
Bme1390I CCNGG 3 cut(s) 96, 266, 810
BmiI GGNNCC 1 cut(s) 471
BmrFI CCNGG 3 cut(s) 96, 266, 810
BmsI GCATC 4 cut(s) 892, 988, 1063, 1102
BoxI GACNNNNGTC 1 cut(s) 145
BpiI GAAGAC 2 cut(s) 21, 1215
BpmI CTGGAG 1 cut(s) 117
Bpu10I CCTNAGC 2 cut(s) 171, 441
BpuEI CTTGAG 2 cut(s) 323, 558
BsaI GGTCTC 1 cut(s) 160
Bse1I ACTGG 1 cut(s) 681
Bse3DI GCAATG 3 cut(s) 125, 567, 1148
BseBI CCWGG 3 cut(s) 96, 266, 810
BseGI GGATG 3 cut(s) 167, 769, 1003
BseMI GCAATG 3 cut(s) 125, 567, 1148
BseMII CTCAG 4 cut(s) 408, 432, 970, 1002
BseNI ACTGG 1 cut(s) 681
BseRI GAGGAG 1 cut(s) 171
BseXI GCAGC 3 cut(s) 331, 449, 892
BsgI GTGCAG 1 cut(s) 672
BshFI GGCC 1 cut(s) 820
BslFI GGGAC 2 cut(s) 749, 792
BsmAI GTCTC 2 cut(s) 133, 160
BsmFI GGGAC 2 cut(s) 749, 792
BsmI GAATGC 1 cut(s) 1001
BsnI GGCC 1 cut(s) 820
Bso31I GGTCTC 1 cut(s) 160
Bsp143I GATC 6 cut(s) 33, 298, 594, 753, 910, 1062
BspANI GGCC 1 cut(s) 820
BspCNI CTCAG 4 cut(s) 409, 433, 969, 1003
BspHI TCATGA 2 cut(s) 196, 946
BspLI GGNNCC 1 cut(s) 471
BspMAI CTGCAG 1 cut(s) 910
BspPI GGATC 4 cut(s) 589, 761, 905, 1070
BspTNI GGTCTC 1 cut(s) 160
BsrDI GCAATG 3 cut(s) 125, 567, 1148
BsrI ACTGG 1 cut(s) 681
BssMI GATC 6 cut(s) 33, 298, 594, 753, 910, 1062
BssSI CACGAG 1 cut(s) 690
Bst2BI CACGAG 1 cut(s) 690
Bst2UI CCWGG 3 cut(s) 96, 266, 810
Bst4CI ACNGT 2 cut(s) 12, 1099
BstAPI GCANNNNNTGC 1 cut(s) 686
BstDEI CTNAG 9 cut(s) 65, 171, 293, 417, 441, 491, 600, 956, 1011
BstF5I GGATG 3 cut(s) 167, 769, 1003
BstHHI GCGC 2 cut(s) 271, 989
BstKTI GATC 6 cut(s) 36, 301, 597, 756, 913, 1065
BstMAI GTCTC 2 cut(s) 133, 160
BstMBI GATC 6 cut(s) 33, 298, 594, 753, 910, 1062
BstMWI GCNNNNNNNGC 1 cut(s) 686
BstNI CCWGG 3 cut(s) 96, 266, 810
BstNSI RCATGY 2 cut(s) 314, 987
BstPAI GACNNNNGTC 1 cut(s) 145
BstSCI CCNGG 3 cut(s) 94, 264, 808
BstSFI CTRYAG 2 cut(s) 456, 906
BstV1I GCAGC 3 cut(s) 331, 449, 892
BstV2I GAAGAC 2 cut(s) 21, 1215
BstX2I RGATCY 3 cut(s) 298, 910, 1062
BstYI RGATCY 3 cut(s) 298, 910, 1062
BsuRI GGCC 1 cut(s) 820
BtsCI GGATG 3 cut(s) 167, 769, 1003
BtsI GCAGTG 1 cut(s) 684
BtsIMutI CAGTG 3 cut(s) 606, 674, 684
CciI TCATGA 2 cut(s) 196, 946
CfoI GCGC 2 cut(s) 271, 989
Csp6I GTAC 4 cut(s) 358, 588, 604, 1095
CspCI CAANNNNNGTGG 2 cut(s) 133, 168
CviAII CATG 6 cut(s) 197, 278, 311, 947, 984, 1163
CviJI RGCY 9 cut(s) 64, 285, 344, 425, 440, 455, 820, 920, 938
CviKI_1 RGCY 9 cut(s) 64, 285, 344, 425, 440, 455, 820, 920, 938
CviQI GTAC 4 cut(s) 358, 588, 604, 1095
DdeI CTNAG 9 cut(s) 65, 171, 293, 417, 441, 491, 600, 956, 1011
DpnI GATC 6 cut(s) 35, 300, 596, 755, 912, 1064
DpnII GATC 6 cut(s) 33, 298, 594, 753, 910, 1062
DraIII CACNNNGTG 1 cut(s) 1184
Eco147I AGGCCT 1 cut(s) 820
Eco31I GGTCTC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 230
EcoRI GAATTC 2 cut(s) 54, 866
EcoRII CCWGG 3 cut(s) 94, 264, 808
EcoT22I ATGCAT 1 cut(s) 1003
FaeI CATG 6 cut(s) 200, 281, 314, 950, 987, 1166
FalI AAGNNNNNCTT 4 cut(s) 320, 352, 633, 665
FaqI GGGAC 2 cut(s) 749, 792
FatI CATG 6 cut(s) 196, 277, 310, 946, 983, 1162
Fnu4HI GCNGC 3 cut(s) 345, 438, 906
FokI GGATG 3 cut(s) 174, 776, 1010
Fsp4HI GCNGC 3 cut(s) 345, 438, 906
FspBI CTAG 3 cut(s) 108, 828, 921
GlaI GCGC 2 cut(s) 270, 988
GluI GCNGC 3 cut(s) 345, 438, 906
GsuI CTGGAG 1 cut(s) 117
HaeIII GGCC 1 cut(s) 820
HhaI GCGC 2 cut(s) 271, 989
Hin1II CATG 6 cut(s) 200, 281, 314, 950, 987, 1166
Hin6I GCGC 2 cut(s) 269, 987
HinP1I GCGC 2 cut(s) 269, 987
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 5 cut(s) 101, 461, 668, 717, 725
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 3 cut(s) 325, 386, 606
Hpy188I TCNGA 4 cut(s) 240, 724, 1012, 1191
Hpy188III TCNNGA 6 cut(s) 197, 302, 575, 751, 947, 1029
Hpy8I GTNNAC 3 cut(s) 325, 386, 606
HpyAV CCTTC 5 cut(s) 18, 296, 532, 619, 707
HpyCH4III ACNGT 2 cut(s) 12, 1099
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 8 cut(s) 118, 437, 560, 689, 908, 1001, 1178, 1219
HpyF10VI GCNNNNNNNGC 1 cut(s) 686
HpyF3I CTNAG 9 cut(s) 65, 171, 293, 417, 441, 491, 600, 956, 1011
HpySE526I ACGT 1 cut(s) 125
Hsp92II CATG 6 cut(s) 200, 281, 314, 950, 987, 1166
HspAI GCGC 2 cut(s) 269, 987
Kzo9I GATC 6 cut(s) 33, 298, 594, 753, 910, 1062
LmnI GCTCC 1 cut(s) 1085
Lsp1109I GCAGC 3 cut(s) 331, 449, 892
LweI GCATC 4 cut(s) 892, 988, 1063, 1102
MaeI CTAG 3 cut(s) 108, 828, 921
MaeII ACGT 1 cut(s) 125
MaeIII GTNAC 1 cut(s) 979
MalI GATC 6 cut(s) 35, 300, 596, 755, 912, 1064
MboI GATC 6 cut(s) 33, 298, 594, 753, 910, 1062
MboII GAAGA 6 cut(s) 21, 281, 663, 906, 1057, 1215
MfeI CAATTG 2 cut(s) 213, 992
MflI RGATCY 3 cut(s) 298, 910, 1062
MlyI GAGTC 2 cut(s) 470, 734
MmeI TCCRAC 2 cut(s) 358, 1169
Mph1103I ATGCAT 1 cut(s) 1003
MroXI GAANNNNTTC 2 cut(s) 28, 474
MseI TTAA 7 cut(s) 338, 483, 582, 645, 792, 885, 962
MspA1I CMGCKG 1 cut(s) 440
MspR9I CCNGG 3 cut(s) 96, 266, 810
MunI CAATTG 2 cut(s) 213, 992
Mva1269I GAATGC 1 cut(s) 1001
MvaI CCWGG 3 cut(s) 96, 266, 810
MwoI GCNNNNNNNGC 1 cut(s) 686
NdeII GATC 6 cut(s) 33, 298, 594, 753, 910, 1062
NlaIII CATG 6 cut(s) 200, 281, 314, 950, 987, 1166
NlaIV GGNNCC 1 cut(s) 471
NmuCI GTSAC 1 cut(s) 979
NsiI ATGCAT 1 cut(s) 1003
NspI RCATGY 2 cut(s) 314, 987
PagI TCATGA 2 cut(s) 196, 946
PceI AGGCCT 1 cut(s) 820
PctI GAATGC 1 cut(s) 1001
PdmI GAANNNNTTC 2 cut(s) 28, 474
PfeI GAWTC 3 cut(s) 101, 668, 717
PfoI TCCNGGA 1 cut(s) 94
PkrI GCNGC 3 cut(s) 346, 439, 907
PleI GAGTC 2 cut(s) 469, 733
PpsI GAGTC 2 cut(s) 469, 733
PshAI GACNNNNGTC 1 cut(s) 145
Psp6I CCWGG 3 cut(s) 94, 264, 808
PspGI CCWGG 3 cut(s) 94, 264, 808
PspN4I GGNNCC 1 cut(s) 471
PstI CTGCAG 1 cut(s) 910
PsuI RGATCY 3 cut(s) 298, 910, 1062
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 4 cut(s) 359, 589, 605, 1096
RsaNI GTAC 4 cut(s) 358, 588, 604, 1095
SaqAI TTAA 7 cut(s) 338, 483, 582, 645, 792, 885, 962
SatI GCNGC 3 cut(s) 345, 438, 906
Sau3AI GATC 6 cut(s) 33, 298, 594, 753, 910, 1062
SchI GAGTC 2 cut(s) 470, 734
ScrFI CCNGG 3 cut(s) 96, 266, 810
SfaNI GCATC 4 cut(s) 892, 988, 1063, 1102
SfcI CTRYAG 2 cut(s) 456, 906
SmlI CTYRAG 2 cut(s) 302, 573
SmoI CTYRAG 2 cut(s) 302, 573
SseBI AGGCCT 1 cut(s) 820
SspMI CTAG 3 cut(s) 108, 828, 921
StuI AGGCCT 1 cut(s) 820
StyD4I CCNGG 3 cut(s) 94, 264, 808
TaaI ACNGT 2 cut(s) 12, 1099
TaiI ACGT 1 cut(s) 128
TaqI TCGA 2 cut(s) 32, 523
TatI WGTACW 2 cut(s) 587, 603
TfiI GAWTC 3 cut(s) 101, 668, 717
Tru1I TTAA 7 cut(s) 338, 483, 582, 645, 792, 885, 962
Tru9I TTAA 7 cut(s) 338, 483, 582, 645, 792, 885, 962
TscAI CASTG 3 cut(s) 613, 681, 691
TseFI GTSAC 1 cut(s) 979
TseI GCWGC 3 cut(s) 344, 437, 905
Tsp45I GTSAC 1 cut(s) 979
TspDTI ATGAA 5 cut(s) 47, 185, 935, 963, 1227
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 3 cut(s) 613, 681, 691
XapI RAATTY 4 cut(s) 54, 611, 842, 866
XceI RCATGY 2 cut(s) 314, 987
XmnI GAANNNNTTC 2 cut(s) 28, 474
XspI CTAG 3 cut(s) 108, 828, 921
Zsp2I ATGCAT 1 cut(s) 1003
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.