Rh7DG290600

Protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013520
Physical Location & Seq
Reverse (-)
32607886 .. 32609049
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG290600.1

Sequence Viewer

Length: 1164 bp
ATGTACAAGAAACCCACGTTAGCTCGCTTTCTCAAAACCCCATTTCAGCAAACACCTTGTATGTGGGTCTCAGTAAAGCACAGACACAGCGGAGGAAGAAGACCCAAGAAGAGAGTCTACCACAGAGACCATGACCTTGACAAAGCCATGGACTTGCGGAAGAAGCCTGCCTTGATTTTACAGCTCAAATCCATTATTCAGTCACACAAGCACCAATCTTTACTTCTCAGGGACCTCGAGAAAGAAGTTGGGTTTGTTCACAAGTGGAATTTCATGGCTGTTATAGAGAAAAATCCTTCAATTTTCTATGTTGGTGGTGGCAATAGAATGCCCCCTTTTGTTCAGCTCACTGAAAAAGCTGAAAGGGTTGCTAGGGAAGAAGCTGAAGCTAAGCAGTTGATGGAACCCATTTTGGTTAAGAATCTAAGGAAATTGTTAATGTTGTCTGTTGATTGCAGGGTTCCACTTGAATCCATTGATTTCGTTCAATGTGAATTGGGTTTGCCGGATGATTTCAAGAAGTCATTGATTCCAAAGTACCCTGAATTTTTTTCAGTTAAGGATGTAAGTGGAAGAGCCTATCTTCATTTGGAGAATTGGGATTCTTCCCTAGCAGTCACAGCTCGTGAGGAACGATTAGCTAGTGATGGGATTGTGGCCTCTGATGGAGTGGGAAAGAATTTTAGAATATCGAAAGATGGTAATTTTCGAGGTCCACAAGCCTTTACAATGAGGTTTCCTGCTGGTTTTAGGCCAAATGCAAGTTATCTTGAGCAACTTGAAAAGTGGCAGAAACTCAAATTCCCTTCTCCGTATTTGAATGCAAGGAGGTTCGACATTGCTGATACTAAAGCAAGGAAGCGAGTAGTGGCAGTGCTTCATGAGCTCCTCAGTTTGACTATGGAGAAGAGGATGACATCTGCTCAAATGGAGGCATTTCATTCAGAGTATTTCTTACCTTCCAAATTGCTGCTTTGTTTGATAAAGCATAATGGTATCTTTTACATAACTAATAAAGGTGCAAGGAGTACTGTTTTTCTTAAAGAAGCTTATGATGGGCCATATTTGATGAACAAATGTCCCATCTTGTTATTCAATGATAAATTTGTAGGACTTAGTGGTAGGAGAGAGATCAATTCATGTAATGTGATGCCTTCTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

387

Amino Acids

44.64

Weight (kDa)

9.74

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 41 - 375 4.5e-103 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013520)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79120 AT1G79120
fragaria_vesca FvH4_5g24801
malus_domestica MD05G1220600.v1.1 MD10G1203000.v1.1
prunus_persica Prupe.4G139300_v2.0.a1
pyrus_communis pycom05g20410 pycom10g17360
rosa_chinensis RchiOBHm_Chr7g0215141
rosa_laevigata RLG00000002690
rosa_multiflora Rmu_sc0005476.1_g000003
rosa_roxburghii Rroxscaffold_3G00244590
rosa_rugosa Rorug07G0150200
rosa_samantha Rh7BG278800 Rh7CG307000 Rh7DG290600 Rh7DG397500
rosa_wichuraiana Rw7G024490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 117
AciI CCGC 2 cut(s) 90, 157
AcsI RAATTY 5 cut(s) 268, 545, 679, 800, 1103
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 3 cut(s) 5, 539, 1030
AgsI TTSAA 7 cut(s) 300, 470, 488, 517, 782, 820, 1096
AjuI GAANNNNNNNTTGG 2 cut(s) 207, 239
Alw21I GWGCWC 1 cut(s) 888
Alw26I GTCTC 2 cut(s) 73, 120
Ama87I CYCGRG 1 cut(s) 236
AoxI GGCC 3 cut(s) 657, 752, 1058
ApeKI GCWGC 1 cut(s) 970
ApoI RAATTY 5 cut(s) 268, 545, 679, 800, 1103
AspS9I GGNCC 3 cut(s) 232, 713, 1058
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 2 cut(s) 232, 713
BanII GRGCYC 1 cut(s) 888
BarI GAAGNNNNNNTAC 2 cut(s) 101, 133
BauI CACGAG 1 cut(s) 624
BbsI GAAGAC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 888
BbvI GCAGC 1 cut(s) 957
BccI CCATC 6 cut(s) 394, 641, 659, 692, 1049, 1091
BcoDI GTCTC 2 cut(s) 73, 120
BfaI CTAG 3 cut(s) 372, 611, 642
BisI GCNGC 1 cut(s) 971
BlpI GCTNAGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 972
BmcAI AGTACT 1 cut(s) 1030
Bme18I GGWCC 2 cut(s) 232, 713
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 3 cut(s) 232, 713, 1058
BmiI GGNNCC 3 cut(s) 233, 405, 462
BmsI GCATC 1 cut(s) 1140
BpiI GAAGAC 1 cut(s) 106
Bpu1102I GCTNAGC 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 791
BsaI GGTCTC 2 cut(s) 73, 120
BsaJI CCNNGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 837
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 3 cut(s) 514, 568, 918
BseMI GCAATG 1 cut(s) 837
BseMII CTCAG 3 cut(s) 84, 241, 904
BseRI GAGGAG 1 cut(s) 878
BseXI GCAGC 1 cut(s) 957
BshFI GGCC 3 cut(s) 659, 754, 1060
BsiHKAI GWGCWC 1 cut(s) 888
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 1 cut(s) 506
BslFI GGGAC 2 cut(s) 245, 1065
BsmAI GTCTC 2 cut(s) 73, 120
BsmFI GGGAC 2 cut(s) 245, 1065
BsmI GAATGC 2 cut(s) 333, 826
BsnI GGCC 3 cut(s) 659, 754, 1060
Bso31I GGTCTC 2 cut(s) 73, 120
BsoBI CYCGRG 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 888
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 1131
Bsp1720I GCTNAGC 1 cut(s) 390
Bsp19I CCATGG 1 cut(s) 147
BspACI CCGC 2 cut(s) 90, 157
BspANI GGCC 3 cut(s) 659, 754, 1060
BspCNI CTCAG 3 cut(s) 83, 240, 903
BspHI TCATGA 1 cut(s) 880
BspLI GGNNCC 3 cut(s) 233, 405, 462
BspQI GCTCTTC 1 cut(s) 568
BspTNI GGTCTC 2 cut(s) 73, 120
BsrDI GCAATG 1 cut(s) 837
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 1 cut(s) 1131
BssSI CACGAG 1 cut(s) 624
BssT1I CCWWGG 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 624
Bst4CI ACNGT 1 cut(s) 1033
Bst6I CTCTTC 3 cut(s) 104, 568, 902
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 25, 168
BstDEI CTNAG 6 cut(s) 70, 227, 390, 425, 890, 1115
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 3 cut(s) 514, 568, 918
BstKTI GATC 1 cut(s) 1134
BstMAI GTCTC 2 cut(s) 73, 120
BstMBI GATC 1 cut(s) 1131
BstMWI GCNNNNNNNGC 3 cut(s) 163, 620, 883
BstV1I GCAGC 1 cut(s) 957
BstV2I GAAGAC 1 cut(s) 106
BsuRI GGCC 3 cut(s) 659, 754, 1060
BtgI CCRYGG 1 cut(s) 147
BtsCI GGATG 3 cut(s) 514, 568, 918
BtsI GCAGTG 1 cut(s) 879
BtsIMutI CAGTG 2 cut(s) 348, 879
Cac8I GCNNGC 2 cut(s) 25, 168
CciI TCATGA 1 cut(s) 880
Cfr13I GGNCC 3 cut(s) 232, 713, 1058
Csp6I GTAC 3 cut(s) 4, 538, 1029
CviAII CATG 5 cut(s) 131, 148, 274, 881, 1140
CviQI GTAC 3 cut(s) 4, 538, 1029
DdeI CTNAG 6 cut(s) 70, 227, 390, 425, 890, 1115
DpnI GATC 1 cut(s) 1133
DpnII GATC 1 cut(s) 1131
Eam1104I CTCTTC 3 cut(s) 104, 568, 902
EarI CTCTTC 3 cut(s) 104, 568, 902
Ecl136II GAGCTC 1 cut(s) 886
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 888
Eco31I GGTCTC 2 cut(s) 73, 120
Eco47I GGWCC 2 cut(s) 232, 713
Eco53kI GAGCTC 1 cut(s) 886
Eco57I CTGAAG 1 cut(s) 405
Eco88I CYCGRG 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 886
EcoO109I RGGNCCY 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 888
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 5 cut(s) 134, 151, 277, 884, 1143
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FaqI GGGAC 2 cut(s) 245, 1065
FatI CATG 5 cut(s) 130, 147, 273, 880, 1139
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 971
FokI GGATG 3 cut(s) 521, 575, 925
FriOI GRGCYC 1 cut(s) 888
Fsp4HI GCNGC 1 cut(s) 971
FspBI CTAG 3 cut(s) 372, 611, 642
GluI GCNGC 1 cut(s) 971
HaeIII GGCC 3 cut(s) 659, 754, 1060
HapII CCGG 1 cut(s) 506
Hin1II CATG 5 cut(s) 134, 151, 277, 884, 1143
HindIII AAGCTT 1 cut(s) 1047
HinfI GANTC 5 cut(s) 114, 421, 470, 529, 602
HpaII CCGG 1 cut(s) 506
Hpy166II GTNNAC 3 cut(s) 118, 259, 716
Hpy188I TCNGA 2 cut(s) 664, 946
Hpy188III TCNNGA 5 cut(s) 238, 517, 626, 770, 881
Hpy8I GTNNAC 3 cut(s) 118, 259, 716
HpyAV CCTTC 4 cut(s) 306, 816, 969, 1164
HpyCH4III ACNGT 1 cut(s) 1033
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 4 cut(s) 456, 761, 824, 1022
HpyF10VI GCNNNNNNNGC 3 cut(s) 163, 620, 883
HpyF3I CTNAG 6 cut(s) 70, 227, 390, 425, 890, 1115
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 5 cut(s) 134, 151, 277, 884, 1143
Kzo9I GATC 1 cut(s) 1131
LguI GCTCTTC 1 cut(s) 568
LmnI GCTCC 1 cut(s) 891
LpnPI CCDG 7 cut(s) 180, 214, 442, 519, 555, 729, 753
Lsp1109I GCAGC 1 cut(s) 957
LweI GCATC 1 cut(s) 1140
MaeI CTAG 3 cut(s) 372, 611, 642
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 2 cut(s) 201, 616
MalI GATC 1 cut(s) 1133
MboI GATC 1 cut(s) 1131
MboII GAAGA 9 cut(s) 108, 111, 121, 172, 389, 575, 585, 597, 919
MhlI GDGCHC 1 cut(s) 888
MlyI GAGTC 1 cut(s) 123
MseI TTAA 4 cut(s) 417, 437, 558, 1041
MspA1I CMGCKG 1 cut(s) 90
MspI CCGG 1 cut(s) 506
Mva1269I GAATGC 2 cut(s) 333, 826
MwoI GCNNNNNNNGC 3 cut(s) 163, 620, 883
NcoI CCATGG 1 cut(s) 147
NdeII GATC 1 cut(s) 1131
NlaIII CATG 5 cut(s) 134, 151, 277, 884, 1143
NlaIV GGNNCC 3 cut(s) 233, 405, 462
NmuCI GTSAC 2 cut(s) 201, 616
PaeR7I CTCGAG 1 cut(s) 236
PagI TCATGA 1 cut(s) 880
PciSI GCTCTTC 1 cut(s) 568
PcsI WCGNNNNNNNCGW 1 cut(s) 631
PctI GAATGC 2 cut(s) 333, 826
PfeI GAWTC 4 cut(s) 421, 470, 529, 602
PkrI GCNGC 1 cut(s) 972
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PpuMI RGGWCCY 1 cut(s) 232
Psp124BI GAGCTC 1 cut(s) 888
Psp5II RGGWCCY 1 cut(s) 232
PspN4I GGNNCC 3 cut(s) 233, 405, 462
PspPI GGNCC 3 cut(s) 232, 713, 1058
PspPPI RGGWCCY 1 cut(s) 232
RsaI GTAC 3 cut(s) 5, 539, 1030
RsaNI GTAC 3 cut(s) 4, 538, 1029
SacI GAGCTC 1 cut(s) 888
SapI GCTCTTC 1 cut(s) 568
SaqAI TTAA 4 cut(s) 417, 437, 558, 1041
SatI GCNGC 1 cut(s) 971
Sau3AI GATC 1 cut(s) 1131
Sau96I GGNCC 3 cut(s) 232, 713, 1058
ScaI AGTACT 1 cut(s) 1030
SchI GAGTC 1 cut(s) 123
SduI GDGCHC 1 cut(s) 888
SfaNI GCATC 1 cut(s) 1140
Sfr274I CTCGAG 1 cut(s) 236
SinI GGWCC 2 cut(s) 232, 713
SlaI CTCGAG 1 cut(s) 236
SmlI CTYRAG 2 cut(s) 236, 770
SmoI CTYRAG 2 cut(s) 236, 770
SsiI CCGC 2 cut(s) 90, 157
SspMI CTAG 3 cut(s) 372, 611, 642
SstI GAGCTC 1 cut(s) 888
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 1033
TaiI ACGT 1 cut(s) 20
TaqI TCGA 4 cut(s) 237, 692, 709, 834
TatI WGTACW 2 cut(s) 3, 1028
TfiI GAWTC 4 cut(s) 421, 470, 529, 602
Tru1I TTAA 4 cut(s) 417, 437, 558, 1041
Tru9I TTAA 4 cut(s) 417, 437, 558, 1041
TscAI CASTG 2 cut(s) 355, 879
TseFI GTSAC 2 cut(s) 201, 616
TseI GCWGC 1 cut(s) 970
Tsp45I GTSAC 2 cut(s) 201, 616
TspDTI ATGAA 6 cut(s) 262, 575, 869, 929, 1085, 1128
TspGWI ACGGA 1 cut(s) 801
TspRI CASTG 2 cut(s) 355, 879
VpaK11BI GGWCC 2 cut(s) 232, 713
XapI RAATTY 5 cut(s) 268, 545, 679, 800, 1103
XhoI CTCGAG 1 cut(s) 236
XmiI GTMKAC 1 cut(s) 117
XspI CTAG 3 cut(s) 372, 611, 642
ZrmI AGTACT 1 cut(s) 1030
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.