Prupe.4G139300_v2.0.a1

Protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0013520
Physical Location & Seq
Forward (+)
7766983 .. 7768996
2014 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G139300.1

Sequence Viewer

Length: 1218 bp
ATGCAAAGGAAAACCGCGATGCTGCGCTTTCACCAACTTCTGAAAACCTCTCCTCCGTGTGAATCACAAGCGCATGCATTGTCATCTCCAATCCCATATCACAGAAAAGCCTCCATGTGGGTCCCGGTGAAGCACAAATCCAGCGGAGGAAGAAGACCCAAGAGGAAAGTCTACCACAGAGTCCACGAACTTGACAAAGTCATGGACTTTCAGAAAAAGCCGGCCTTGATTTTGCAGCTGAAATCTATTATTCAGTCGCAAAAGCACCAATCTCTCCTTCTCAGGGATCTCGAGAAAGAAGTTGGGTTTGTTCAGAAATGGAACTTCATGGCTGCCATAGAAAAATATCCTTCAATCTTCTATGTTGGTGGTGGTAACAGAACGCCCCCTTTTGTTACACTCGCTGAAAAAGCTAAAAAAGTTGCTAGAGAAGAAGCTGAAGCTAAGGATTTGATGGAACCCATTTTGGTTAAAAACTTGAGGAAGCTGTTAATGCTGTCAGTTGATTGCCGGGTCCCTCTGGAAAACATTGAATTCATTGAATCCGAATTGGGTTTGCCGAATGATTTCAAGAAATCATTGCTTCCAAAGTACCCTGAAATTTTTTCTGTCAAGGAAGTCAATGGCAAACTTCATCTTCATTTGGAGAATTGGGATTCTTCAATAGCAGTCACAGCTCGTGAGGAACAATTAGGTGGTGAAGGGATTTCAGCTCCTTCTGGATTGGGAAACAAGGTTAGAATATCAAAAGATGGTAACTTTCTAGGTCCGCATGCATTTAGAATGAGTTTTCCTGCTGGTTTTAGGCCGAACACTAGCTATCTTGAGCAACTTGAAAGGTGGCAGAAAATGGATTTCCCTTCCCCTTATTTGAACGCCAGGAGATTTGACATTGCTGATCCGAAAGTCAGGAAGCGGGTGGTTGCGGTGCTCCATGAGCTCCTCAGCTTGACAATGCAGAAGAGGATGACATCTGCTCAATTGGATGCGTTTCACTCGGAGTATTTCTTGCCCTCTAAATTGCTGCTCTGTCTGATAAAGCATCCTGGCATATTTTACATAACTAATAAAGGTGCAAGGAGCACTGTGTTTCTTAAAGAAGCTTATGATGGGCTGAATTTGATAAACAAATGTCCCCTTTTGTTGTTTAACGATAAATTTGTAGCACTTAGCGGTAGGAGAGAGATCAATTCATGTAAAACCATGCATTCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

406

Amino Acids

46.32

Weight (kDa)

9.79

Isoelectric Point (pI)

53.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013520)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79120 AT1G79120
fragaria_vesca FvH4_5g24801
malus_domestica MD05G1220600.v1.1 MD10G1203000.v1.1
prunus_persica Prupe.4G139300_v2.0.a1
pyrus_communis pycom05g20410 pycom10g17360
rosa_chinensis RchiOBHm_Chr7g0215141
rosa_laevigata RLG00000002690
rosa_multiflora Rmu_sc0005476.1_g000003
rosa_roxburghii Rroxscaffold_3G00244590
rosa_rugosa Rorug07G0150200
rosa_samantha Rh7BG278800 Rh7CG307000 Rh7DG290600 Rh7DG397500
rosa_wichuraiana Rw7G024490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 171
AccII CGCG 1 cut(s) 17
AciI CCGC 6 cut(s) 15, 144, 770, 916, 926, 1173
AclWI GGATC 2 cut(s) 294, 893
AcsI RAATTY 4 cut(s) 533, 600, 1117, 1157
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 1 cut(s) 593
AfiI CCNNNNNNNGG 2 cut(s) 117, 283
AgsI TTSAA 7 cut(s) 354, 533, 542, 571, 663, 836, 874
AjnI CCWGG 2 cut(s) 878, 1045
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
Alw21I GWGCWC 3 cut(s) 933, 942, 1085
AlwI GGATC 2 cut(s) 294, 893
Ama87I CYCGRG 1 cut(s) 290
AoxI GGCC 2 cut(s) 222, 806
ApeKI GCWGC 4 cut(s) 22, 235, 332, 1024
ApoI RAATTY 4 cut(s) 533, 600, 1117, 1157
Asp700I GAANNNNTTC 1 cut(s) 566
AspLEI GCGC 2 cut(s) 27, 73
AspS9I GGNCC 3 cut(s) 121, 514, 767
AsuC2I CCSGG 2 cut(s) 125, 512
AsuHPI GGTGA 3 cut(s) 23, 139, 710
AvaI CYCGRG 1 cut(s) 290
AvaII GGWCC 3 cut(s) 121, 514, 767
BanII GRGCYC 1 cut(s) 942
BauI CACGAG 1 cut(s) 678
BbsI GAAGAC 1 cut(s) 160
Bbv12I GWGCWC 3 cut(s) 933, 942, 1085
BbvCI CCTCAGC 1 cut(s) 944
BbvI GCAGC 4 cut(s) 9, 247, 319, 1011
BccI CCATC 3 cut(s) 448, 746, 1103
BciT130I CCWGG 2 cut(s) 880, 1047
BcnI CCSGG 2 cut(s) 125, 512
BfaI CTAG 3 cut(s) 426, 764, 816
BisI GCNGC 4 cut(s) 23, 236, 333, 1025
BlsI GCNGC 4 cut(s) 24, 237, 334, 1026
Bme1390I CCNGG 4 cut(s) 125, 512, 880, 1047
Bme18I GGWCC 3 cut(s) 121, 514, 767
BmeT110I CYCGRG 1 cut(s) 290
BmgT120I GGNCC 3 cut(s) 121, 514, 767
BmiI GGNNCC 5 cut(s) 122, 123, 459, 515, 516
BmrFI CCNGG 4 cut(s) 125, 512, 880, 1047
BmsI GCATC 3 cut(s) 9, 976, 1051
BpiI GAAGAC 1 cut(s) 160
Bpu10I CCTNAGC 2 cut(s) 444, 944
BpuEI CTTGAG 2 cut(s) 499, 845
BpuMI CCSGG 2 cut(s) 125, 512
BsaXI ACNNNNNCTCC 2 cut(s) 37, 67
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 283
Bse118I RCCGGY 1 cut(s) 220
Bse3DI GCAATG 2 cut(s) 578, 891
BseBI CCWGG 2 cut(s) 880, 1047
BseGI GGATG 3 cut(s) 972, 991, 1042
BseLI CCNNNNNNNGG 2 cut(s) 117, 283
BseMI GCAATG 2 cut(s) 578, 891
BseMII CTCAG 2 cut(s) 295, 958
BseRI GAGGAG 2 cut(s) 42, 932
BseXI GCAGC 4 cut(s) 9, 247, 319, 1011
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 2 cut(s) 224, 808
BsiHKAI GWGCWC 3 cut(s) 933, 942, 1085
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 3 cut(s) 125, 221, 511
BslFI GGGAC 3 cut(s) 107, 500, 1119
BslI CCNNNNNNNGG 2 cut(s) 117, 283
BsmFI GGGAC 3 cut(s) 107, 500, 1119
BsmI GAATGC 1 cut(s) 1207
BsnI GGCC 2 cut(s) 224, 808
BsoBI CYCGRG 1 cut(s) 290
Bsp1286I GDGCHC 3 cut(s) 933, 942, 1085
Bsp143I GATC 3 cut(s) 286, 898, 1185
BspACI CCGC 6 cut(s) 15, 144, 770, 916, 926, 1173
BspANI GGCC 2 cut(s) 224, 808
BspCNI CTCAG 2 cut(s) 294, 957
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 5 cut(s) 122, 123, 459, 515, 516
BspPI GGATC 2 cut(s) 294, 893
BsrDI GCAATG 2 cut(s) 578, 891
BsrFI RCCGGY 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 220
BssMI GATC 3 cut(s) 286, 898, 1185
BssSI CACGAG 1 cut(s) 678
Bst2BI CACGAG 1 cut(s) 678
Bst2UI CCWGG 2 cut(s) 880, 1047
Bst4CI ACNGT 1 cut(s) 1087
Bst6I CTCTTC 1 cut(s) 956
BstC8I GCNNGC 3 cut(s) 75, 222, 774
BstDEI CTNAG 4 cut(s) 281, 444, 944, 1169
BstF5I GGATG 3 cut(s) 972, 991, 1042
BstFNI CGCG 1 cut(s) 17
BstHHI GCGC 2 cut(s) 27, 73
BstKTI GATC 3 cut(s) 289, 901, 1188
BstMBI GATC 3 cut(s) 286, 898, 1185
BstMWI GCNNNNNNNGC 4 cut(s) 410, 493, 674, 937
BstNI CCWGG 2 cut(s) 880, 1047
BstNSI RCATGY 2 cut(s) 77, 776
BstSCI CCNGG 4 cut(s) 123, 510, 878, 1045
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 4 cut(s) 9, 247, 319, 1011
BstV2I GAAGAC 1 cut(s) 160
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BsuRI GGCC 2 cut(s) 224, 808
BtgZI GCGATG 1 cut(s) 32
BtsCI GGATG 3 cut(s) 972, 991, 1042
BtsIMutI CAGTG 1 cut(s) 1083
Cac8I GCNNGC 3 cut(s) 75, 222, 774
CfoI GCGC 2 cut(s) 27, 73
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 3 cut(s) 121, 514, 767
Csp6I GTAC 1 cut(s) 592
CviAII CATG 8 cut(s) 74, 115, 202, 328, 773, 935, 1194, 1204
CviQI GTAC 1 cut(s) 592
DdeI CTNAG 4 cut(s) 281, 444, 944, 1169
DpnI GATC 3 cut(s) 288, 900, 1187
DpnII GATC 3 cut(s) 286, 898, 1185
Eam1104I CTCTTC 1 cut(s) 956
EarI CTCTTC 1 cut(s) 956
Ecl136II GAGCTC 1 cut(s) 940
Eco24I GRGCYC 1 cut(s) 942
Eco47I GGWCC 3 cut(s) 121, 514, 767
Eco53kI GAGCTC 1 cut(s) 940
Eco57I CTGAAG 1 cut(s) 459
Eco88I CYCGRG 1 cut(s) 290
EcoICRI GAGCTC 1 cut(s) 940
EcoO109I RGGNCCY 2 cut(s) 121, 514
EcoRI GAATTC 1 cut(s) 533
EcoRII CCWGG 2 cut(s) 878, 1045
EcoT22I ATGCAT 3 cut(s) 79, 778, 1209
EcoT38I GRGCYC 1 cut(s) 942
FaeI CATG 8 cut(s) 77, 118, 205, 331, 776, 938, 1197, 1207
FalI AAGNNNNNCTT 2 cut(s) 209, 241
FaqI GGGAC 3 cut(s) 107, 500, 1119
FatI CATG 8 cut(s) 73, 114, 201, 327, 772, 934, 1193, 1203
FauI CCCGC 1 cut(s) 909
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 4 cut(s) 23, 236, 333, 1025
FokI GGATG 3 cut(s) 979, 998, 1029
FriOI GRGCYC 1 cut(s) 942
Fsp4HI GCNGC 4 cut(s) 23, 236, 333, 1025
FspBI CTAG 3 cut(s) 426, 764, 816
GlaI GCGC 2 cut(s) 26, 72
GluI GCNGC 4 cut(s) 23, 236, 333, 1025
HaeIII GGCC 2 cut(s) 224, 808
HapII CCGG 3 cut(s) 125, 221, 511
HhaI GCGC 2 cut(s) 27, 73
Hin1II CATG 8 cut(s) 77, 118, 205, 331, 776, 938, 1197, 1207
Hin6I GCGC 2 cut(s) 25, 71
HinP1I GCGC 2 cut(s) 25, 71
HindIII AAGCTT 1 cut(s) 1101
HinfI GANTC 4 cut(s) 62, 180, 542, 656
HpaII CCGG 3 cut(s) 125, 221, 511
HphI GGTGA 3 cut(s) 23, 139, 710
Hpy166II GTNNAC 2 cut(s) 172, 184
Hpy188I TCNGA 7 cut(s) 42, 213, 315, 547, 903, 1000, 1035
Hpy188III TCNNGA 8 cut(s) 290, 292, 521, 571, 680, 720, 824, 910
Hpy8I GTNNAC 2 cut(s) 172, 184
HpyAV CCTTC 5 cut(s) 287, 360, 695, 726, 870
HpyCH4III ACNGT 1 cut(s) 1087
HpyCH4V TGCA 7 cut(s) 4, 77, 235, 776, 958, 1076, 1207
HpyF10VI GCNNNNNNNGC 4 cut(s) 410, 493, 674, 937
HpyF3I CTNAG 4 cut(s) 281, 444, 944, 1169
Hsp92II CATG 8 cut(s) 77, 118, 205, 331, 776, 938, 1197, 1207
HspAI GCGC 2 cut(s) 25, 71
KflI GGGWCCC 2 cut(s) 121, 514
KroI GCCGGC 1 cut(s) 220
KroNI GCCGGC 1 cut(s) 222
Kzo9I GATC 3 cut(s) 286, 898, 1185
LmnI GCTCC 4 cut(s) 718, 936, 945, 1080
Lsp1109I GCAGC 4 cut(s) 9, 247, 319, 1011
LweI GCATC 3 cut(s) 9, 976, 1051
MaeI CTAG 3 cut(s) 426, 764, 816
MaeIII GTNAC 4 cut(s) 374, 394, 670, 755
MalI GATC 3 cut(s) 288, 900, 1187
MboI GATC 3 cut(s) 286, 898, 1185
MboII GAAGA 8 cut(s) 162, 165, 349, 443, 629, 651, 973, 1203
MfeI CAATTG 1 cut(s) 980
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 3 cut(s) 933, 942, 1085
MlyI GAGTC 1 cut(s) 189
Mph1103I ATGCAT 3 cut(s) 79, 778, 1209
MroNI GCCGGC 1 cut(s) 220
MroXI GAANNNNTTC 1 cut(s) 566
MseI TTAA 4 cut(s) 471, 491, 1095, 1149
MspA1I CMGCKG 2 cut(s) 144, 238
MspI CCGG 3 cut(s) 125, 221, 511
MspR9I CCNGG 4 cut(s) 125, 512, 880, 1047
MunI CAATTG 1 cut(s) 980
Mva1269I GAATGC 1 cut(s) 1207
MvaI CCWGG 2 cut(s) 880, 1047
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 4 cut(s) 410, 493, 674, 937
NaeI GCCGGC 1 cut(s) 222
NciI CCSGG 2 cut(s) 125, 512
NdeII GATC 3 cut(s) 286, 898, 1185
NgoMIV GCCGGC 1 cut(s) 220
NlaIII CATG 8 cut(s) 77, 118, 205, 331, 776, 938, 1197, 1207
NlaIV GGNNCC 5 cut(s) 122, 123, 459, 515, 516
NmuCI GTSAC 1 cut(s) 670
NsiI ATGCAT 3 cut(s) 79, 778, 1209
NspI RCATGY 2 cut(s) 77, 776
PaeI GCATGC 2 cut(s) 77, 776
PaeR7I CTCGAG 1 cut(s) 290
PctI GAATGC 1 cut(s) 1207
PdiI GCCGGC 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 566
PfeI GAWTC 3 cut(s) 62, 542, 656
PflFI GACNNNGTC 1 cut(s) 197
PkrI GCNGC 4 cut(s) 24, 237, 334, 1026
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PpuMI RGGWCCY 2 cut(s) 121, 514
Psp124BI GAGCTC 1 cut(s) 942
Psp5II RGGWCCY 2 cut(s) 121, 514
Psp6I CCWGG 2 cut(s) 878, 1045
PspGI CCWGG 2 cut(s) 878, 1045
PspN4I GGNNCC 5 cut(s) 122, 123, 459, 515, 516
PspPI GGNCC 3 cut(s) 121, 514, 767
PspPPI RGGWCCY 2 cut(s) 121, 514
PsuI RGATCY 1 cut(s) 286
PsyI GACNNNGTC 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 238
RsaI GTAC 1 cut(s) 593
RsaNI GTAC 1 cut(s) 592
SacI GAGCTC 1 cut(s) 942
SaqAI TTAA 4 cut(s) 471, 491, 1095, 1149
SatI GCNGC 4 cut(s) 23, 236, 333, 1025
Sau3AI GATC 3 cut(s) 286, 898, 1185
Sau96I GGNCC 3 cut(s) 121, 514, 767
SchI GAGTC 1 cut(s) 189
ScrFI CCNGG 4 cut(s) 125, 512, 880, 1047
SduI GDGCHC 3 cut(s) 933, 942, 1085
SfaNI GCATC 3 cut(s) 9, 976, 1051
Sfr274I CTCGAG 1 cut(s) 290
SinI GGWCC 3 cut(s) 121, 514, 767
SlaI CTCGAG 1 cut(s) 290
SmlI CTYRAG 3 cut(s) 290, 478, 824
SmoI CTYRAG 3 cut(s) 290, 478, 824
SphI GCATGC 2 cut(s) 77, 776
SsiI CCGC 6 cut(s) 15, 144, 770, 916, 926, 1173
SspMI CTAG 3 cut(s) 426, 764, 816
SstI GAGCTC 1 cut(s) 942
StyD4I CCNGG 4 cut(s) 123, 510, 878, 1045
TaaI ACNGT 1 cut(s) 1087
TaqI TCGA 1 cut(s) 291
TfiI GAWTC 3 cut(s) 62, 542, 656
Tru1I TTAA 4 cut(s) 471, 491, 1095, 1149
Tru9I TTAA 4 cut(s) 471, 491, 1095, 1149
TscAI CASTG 1 cut(s) 1090
TseFI GTSAC 1 cut(s) 670
TseI GCWGC 4 cut(s) 22, 235, 332, 1024
Tsp45I GTSAC 1 cut(s) 670
TspDTI ATGAA 6 cut(s) 316, 526, 623, 629, 1182, 1203
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 1 cut(s) 1090
Tth111I GACNNNGTC 1 cut(s) 197
VpaK11BI GGWCC 3 cut(s) 121, 514, 767
XapI RAATTY 4 cut(s) 533, 600, 1117, 1157
XceI RCATGY 2 cut(s) 77, 776
XhoI CTCGAG 1 cut(s) 290
XmiI GTMKAC 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 566
XspI CTAG 3 cut(s) 426, 764, 816
Zsp2I ATGCAT 3 cut(s) 79, 778, 1209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.