Rmu_sc0005476.1_g000003

Protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005476.1
OG0013520
Physical Location & Seq
Forward (+)
34706 .. 35878
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005476.1_g000003.1.cds

Sequence Viewer

Length: 1173 bp
atgtacaagaaacccacgttagctcgctttcaccaacttctcaaaaccccatttcagcaaacaccttgtatgtgggtctcagtaaagcacaaacacagcggaggaagaagacccaagaagagagtctaccacagagaccatgaccttgacaaatccatggacttgcggaagaagcctgccttgattttacagctcaaatccattattcagtcacacaagcaccgatctttacttctcagggacctcgagaaagaagttgggtttgttcacaagtggaatttcatggctgttatagagaaaaatccttcaattttctatgttggtggtggcaatagaatgcccccctttgttcagctcactgaaaaagctgaaagggttgctagggaagaagctgaagctaagcagttgatggaacccattttggttaagaatctaaggaaattgttaatgttgtctgttgattgcagggttccacttgaatccattgatttcgttcaatgtgaattgggtttgccggatgatttcaagaagtcattgattccaaagtaccctgaatttttttcagttaaggatgtaagtggaagagcctatcttcatttggagaattgggattcttccctagcagtcacagctcgtgaggaacgattagctagtgatgggattgtggcctctgatggagtgggaaagaattttagaatatcgaaagagggtaattttcgaggtccacaagcctttacaatgaggtttcctgctggttttaggccaaatgcaagttatcttgagcaacttgaaaagtggcagaaactcaaattcccttctccatatttgaatgcaaggaggttcgacattgctgatactaaagcaaggaagcgagtggtggcagtgcttcatgagctcctcagtttgactatggagaagaggatgacatctgctcaaatggaggcatttcattcagagtatttcttaccttccaaattgctgctttgtttgataaagcataatggtatcttttacataactaataaaggtgcaaggagtactgtttttcttaaagaagcttatgatgggccatatttgatgaacaaatgtcccatcttgttattcaatgataaatttgtaggacttagtggtaggagagagatcaattcatgtaatgtgatgccttctttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

390

Amino Acids

45.05

Weight (kDa)

9.77

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013520)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79120 AT1G79120
fragaria_vesca FvH4_5g24801
malus_domestica MD05G1220600.v1.1 MD10G1203000.v1.1
prunus_persica Prupe.4G139300_v2.0.a1
pyrus_communis pycom05g20410 pycom10g17360
rosa_chinensis RchiOBHm_Chr7g0215141
rosa_laevigata RLG00000002690
rosa_multiflora Rmu_sc0005476.1_g000003
rosa_roxburghii Rroxscaffold_3G00244590
rosa_rugosa Rorug07G0150200
rosa_samantha Rh7BG278800 Rh7CG307000 Rh7DG290600 Rh7DG397500
rosa_wichuraiana Rw7G024490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 126
AciI CCGC 2 cut(s) 99, 166
AcsI RAATTY 5 cut(s) 277, 554, 688, 809, 1112
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 3 cut(s) 5, 548, 1039
AgsI TTSAA 7 cut(s) 309, 479, 497, 526, 791, 829, 1105
Alw21I GWGCWC 1 cut(s) 897
Alw26I GTCTC 2 cut(s) 82, 129
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 3 cut(s) 666, 761, 1067
ApeKI GCWGC 1 cut(s) 979
ApoI RAATTY 5 cut(s) 277, 554, 688, 809, 1112
AspS9I GGNCC 3 cut(s) 241, 722, 1067
AsuHPI GGTGA 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 245
AvaII GGWCC 2 cut(s) 241, 722
BanII GRGCYC 1 cut(s) 897
BarI GAAGNNNNNNTAC 2 cut(s) 110, 142
BauI CACGAG 1 cut(s) 633
BbsI GAAGAC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 897
BbvI GCAGC 1 cut(s) 966
BccI CCATC 5 cut(s) 403, 650, 668, 1058, 1100
BcoDI GTCTC 2 cut(s) 82, 129
BfaI CTAG 3 cut(s) 381, 620, 651
BisI GCNGC 1 cut(s) 980
BlpI GCTNAGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 981
BmcAI AGTACT 1 cut(s) 1039
Bme18I GGWCC 2 cut(s) 241, 722
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 3 cut(s) 241, 722, 1067
BmiI GGNNCC 3 cut(s) 242, 414, 471
BmsI GCATC 1 cut(s) 1149
BpiI GAAGAC 1 cut(s) 115
Bpu1102I GCTNAGC 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 800
BsaI GGTCTC 2 cut(s) 82, 129
BsaJI CCNNGG 1 cut(s) 156
Bse3DI GCAATG 1 cut(s) 846
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 3 cut(s) 523, 577, 927
BseMI GCAATG 1 cut(s) 846
BseMII CTCAG 3 cut(s) 93, 250, 913
BseRI GAGGAG 1 cut(s) 887
BseXI GCAGC 1 cut(s) 966
BshFI GGCC 3 cut(s) 668, 763, 1069
BsiHKAI GWGCWC 1 cut(s) 897
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 1 cut(s) 515
BslFI GGGAC 2 cut(s) 254, 1074
BsmAI GTCTC 2 cut(s) 82, 129
BsmFI GGGAC 2 cut(s) 254, 1074
BsmI GAATGC 2 cut(s) 342, 835
BsnI GGCC 3 cut(s) 668, 763, 1069
Bso31I GGTCTC 2 cut(s) 82, 129
BsoBI CYCGRG 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 897
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 224, 1140
Bsp1720I GCTNAGC 1 cut(s) 399
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 2 cut(s) 99, 166
BspANI GGCC 3 cut(s) 668, 763, 1069
BspCNI CTCAG 3 cut(s) 92, 249, 912
BspHI TCATGA 1 cut(s) 889
BspLI GGNNCC 3 cut(s) 242, 414, 471
BspQI GCTCTTC 1 cut(s) 577
BspTNI GGTCTC 2 cut(s) 82, 129
BsrDI GCAATG 1 cut(s) 846
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 2 cut(s) 224, 1140
BssSI CACGAG 1 cut(s) 633
BssT1I CCWWGG 1 cut(s) 156
Bst2BI CACGAG 1 cut(s) 633
Bst4CI ACNGT 1 cut(s) 1042
Bst6I CTCTTC 3 cut(s) 113, 577, 911
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 25, 177
BstDEI CTNAG 6 cut(s) 79, 236, 399, 434, 899, 1124
BstDSI CCRYGG 1 cut(s) 156
BstF5I GGATG 3 cut(s) 523, 577, 927
BstKTI GATC 2 cut(s) 227, 1143
BstMAI GTCTC 2 cut(s) 82, 129
BstMBI GATC 2 cut(s) 224, 1140
BstMWI GCNNNNNNNGC 3 cut(s) 172, 629, 892
BstV1I GCAGC 1 cut(s) 966
BstV2I GAAGAC 1 cut(s) 115
BsuRI GGCC 3 cut(s) 668, 763, 1069
BtgI CCRYGG 1 cut(s) 156
BtsCI GGATG 3 cut(s) 523, 577, 927
BtsI GCAGTG 1 cut(s) 888
BtsIMutI CAGTG 2 cut(s) 357, 888
Cac8I GCNNGC 2 cut(s) 25, 177
CciI TCATGA 1 cut(s) 889
Cfr13I GGNCC 3 cut(s) 241, 722, 1067
Csp6I GTAC 3 cut(s) 4, 547, 1038
CviAII CATG 5 cut(s) 140, 157, 283, 890, 1149
CviQI GTAC 3 cut(s) 4, 547, 1038
DdeI CTNAG 6 cut(s) 79, 236, 399, 434, 899, 1124
DpnI GATC 2 cut(s) 226, 1142
DpnII GATC 2 cut(s) 224, 1140
Eam1104I CTCTTC 3 cut(s) 113, 577, 911
EarI CTCTTC 3 cut(s) 113, 577, 911
Ecl136II GAGCTC 1 cut(s) 895
Eco130I CCWWGG 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 897
Eco31I GGTCTC 2 cut(s) 82, 129
Eco47I GGWCC 2 cut(s) 241, 722
Eco53kI GAGCTC 1 cut(s) 895
Eco57I CTGAAG 1 cut(s) 414
Eco88I CYCGRG 1 cut(s) 245
EcoICRI GAGCTC 1 cut(s) 895
EcoO109I RGGNCCY 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 156
EcoT38I GRGCYC 1 cut(s) 897
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 5 cut(s) 143, 160, 286, 893, 1152
FalI AAGNNNNNCTT 2 cut(s) 164, 196
FaqI GGGAC 2 cut(s) 254, 1074
FatI CATG 5 cut(s) 139, 156, 282, 889, 1148
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 980
FokI GGATG 3 cut(s) 530, 584, 934
FriOI GRGCYC 1 cut(s) 897
Fsp4HI GCNGC 1 cut(s) 980
FspBI CTAG 3 cut(s) 381, 620, 651
GluI GCNGC 1 cut(s) 980
HaeIII GGCC 3 cut(s) 668, 763, 1069
HapII CCGG 1 cut(s) 515
Hin1II CATG 5 cut(s) 143, 160, 286, 893, 1152
HindIII AAGCTT 1 cut(s) 1056
HinfI GANTC 5 cut(s) 123, 430, 479, 538, 611
HpaII CCGG 1 cut(s) 515
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 3 cut(s) 127, 268, 725
Hpy188I TCNGA 2 cut(s) 673, 955
Hpy188III TCNNGA 5 cut(s) 247, 526, 635, 779, 890
Hpy8I GTNNAC 3 cut(s) 127, 268, 725
HpyAV CCTTC 4 cut(s) 315, 825, 978, 1173
HpyCH4III ACNGT 1 cut(s) 1042
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 4 cut(s) 465, 770, 833, 1031
HpyF10VI GCNNNNNNNGC 3 cut(s) 172, 629, 892
HpyF3I CTNAG 6 cut(s) 79, 236, 399, 434, 899, 1124
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 5 cut(s) 143, 160, 286, 893, 1152
Kzo9I GATC 2 cut(s) 224, 1140
LguI GCTCTTC 1 cut(s) 577
LmnI GCTCC 1 cut(s) 900
LpnPI CCDG 7 cut(s) 189, 223, 451, 528, 564, 738, 762
Lsp1109I GCAGC 1 cut(s) 966
LweI GCATC 1 cut(s) 1149
MaeI CTAG 3 cut(s) 381, 620, 651
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 2 cut(s) 210, 625
MalI GATC 2 cut(s) 226, 1142
MboI GATC 2 cut(s) 224, 1140
MboII GAAGA 9 cut(s) 117, 120, 130, 181, 398, 584, 594, 606, 928
MhlI GDGCHC 1 cut(s) 897
MlyI GAGTC 1 cut(s) 132
MseI TTAA 4 cut(s) 426, 446, 567, 1050
MspA1I CMGCKG 1 cut(s) 99
MspI CCGG 1 cut(s) 515
Mva1269I GAATGC 2 cut(s) 342, 835
MwoI GCNNNNNNNGC 3 cut(s) 172, 629, 892
NcoI CCATGG 1 cut(s) 156
NdeII GATC 2 cut(s) 224, 1140
NlaIII CATG 5 cut(s) 143, 160, 286, 893, 1152
NlaIV GGNNCC 3 cut(s) 242, 414, 471
NmuCI GTSAC 2 cut(s) 210, 625
PaeR7I CTCGAG 1 cut(s) 245
PagI TCATGA 1 cut(s) 889
PciSI GCTCTTC 1 cut(s) 577
PcsI WCGNNNNNNNCGW 1 cut(s) 640
PctI GAATGC 2 cut(s) 342, 835
PfeI GAWTC 4 cut(s) 430, 479, 538, 611
PkrI GCNGC 1 cut(s) 981
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PpuMI RGGWCCY 1 cut(s) 241
Psp124BI GAGCTC 1 cut(s) 897
Psp5II RGGWCCY 1 cut(s) 241
PspN4I GGNNCC 3 cut(s) 242, 414, 471
PspPI GGNCC 3 cut(s) 241, 722, 1067
PspPPI RGGWCCY 1 cut(s) 241
RsaI GTAC 3 cut(s) 5, 548, 1039
RsaNI GTAC 3 cut(s) 4, 547, 1038
SacI GAGCTC 1 cut(s) 897
SapI GCTCTTC 1 cut(s) 577
SaqAI TTAA 4 cut(s) 426, 446, 567, 1050
SatI GCNGC 1 cut(s) 980
Sau3AI GATC 2 cut(s) 224, 1140
Sau96I GGNCC 3 cut(s) 241, 722, 1067
ScaI AGTACT 1 cut(s) 1039
SchI GAGTC 1 cut(s) 132
SduI GDGCHC 1 cut(s) 897
SfaNI GCATC 1 cut(s) 1149
Sfr274I CTCGAG 1 cut(s) 245
SinI GGWCC 2 cut(s) 241, 722
SlaI CTCGAG 1 cut(s) 245
SmlI CTYRAG 2 cut(s) 245, 779
SmoI CTYRAG 2 cut(s) 245, 779
SsiI CCGC 2 cut(s) 99, 166
SspMI CTAG 3 cut(s) 381, 620, 651
SstI GAGCTC 1 cut(s) 897
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 1042
TaiI ACGT 1 cut(s) 20
TaqI TCGA 4 cut(s) 246, 701, 718, 843
TatI WGTACW 2 cut(s) 3, 1037
TfiI GAWTC 4 cut(s) 430, 479, 538, 611
Tru1I TTAA 4 cut(s) 426, 446, 567, 1050
Tru9I TTAA 4 cut(s) 426, 446, 567, 1050
TscAI CASTG 2 cut(s) 364, 888
TseFI GTSAC 2 cut(s) 210, 625
TseI GCWGC 1 cut(s) 979
Tsp45I GTSAC 2 cut(s) 210, 625
TspDTI ATGAA 6 cut(s) 271, 584, 878, 938, 1094, 1137
TspRI CASTG 2 cut(s) 364, 888
VpaK11BI GGWCC 2 cut(s) 241, 722
XapI RAATTY 5 cut(s) 277, 554, 688, 809, 1112
XhoI CTCGAG 1 cut(s) 245
XmiI GTMKAC 1 cut(s) 126
XspI CTAG 3 cut(s) 381, 620, 651
ZrmI AGTACT 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.