E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G79380 |
| fragaria_vesca | FvH4_3g13940 FvH4_3g13940 FvH4_3g13940 FvH4_3g13940 |
| malus_domestica | MD05G1239600.v1.1 MD10G1217900.v1.1 |
| prunus_persica | Prupe.4G126200_v2.0.a1 Prupe.4G126200_v2.0.a1 |
| pyrus_communis | pycom05g21590 pycom10g18370 |
| rosa_chinensis | RchiOBHm_Chr5g0023161 |
| rosa_laevigata | RLG00000032704 |
| rosa_multiflora | Rmu_sc0007300.1_g000015 |
| rosa_roxburghii | Rroxscaffold_1G00056180 |
| rosa_rugosa | Rorug05G0077700 Rorug05G0077700 Rorug05G0077700 |
| rosa_samantha | Rh5AG163800 Rh5BG163100 Rh5CG178100 Rh5DG164500 |
| rosa_wichuraiana | Rw5G014780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1051 |
| AatII | GACGTC | 1 cut(s) | 80 |
| Acc36I | ACCTGC | 1 cut(s) | 1051 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 370, 476, 610 |
| AccBSI | CCGCTC | 1 cut(s) | 556 |
| AccI | GTMKAC | 1 cut(s) | 573 |
| AccII | CGCG | 2 cut(s) | 314, 698 |
| AciI | CCGC | 4 cut(s) | 175, 554, 937, 1137 |
| AclI | AACGTT | 1 cut(s) | 368 |
| AclWI | GGATC | 6 cut(s) | 104, 117, 784, 1134, 1147, 1184 |
| AcoI | YGGCCR | 3 cut(s) | 361, 654, 1114 |
| AcsI | RAATTY | 3 cut(s) | 13, 803, 826 |
| AcyI | GRCGYC | 1 cut(s) | 77 |
| AfaI | GTAC | 3 cut(s) | 158, 646, 1001 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 193, 370, 407, 476, 610 |
| AgsI | TTSAA | 2 cut(s) | 227, 423 |
| AjiI | CACGTC | 1 cut(s) | 1099 |
| AjnI | CCWGG | 1 cut(s) | 192 |
| AluBI | AGCT | 6 cut(s) | 206, 218, 714, 890, 1110, 1195 |
| AluI | AGCT | 6 cut(s) | 206, 218, 714, 890, 1110, 1195 |
| Alw26I | GTCTC | 2 cut(s) | 87, 744 |
| AlwI | GGATC | 6 cut(s) | 104, 117, 784, 1134, 1147, 1184 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 863 |
| Ama87I | CYCGRG | 1 cut(s) | 944 |
| AoxI | GGCC | 5 cut(s) | 361, 536, 654, 983, 1114 |
| ApeKI | GCWGC | 3 cut(s) | 566, 890, 923 |
| ApoI | RAATTY | 3 cut(s) | 13, 803, 826 |
| AspLEI | GCGC | 1 cut(s) | 316 |
| AspS9I | GGNCC | 3 cut(s) | 536, 551, 755 |
| AsuHPI | GGTGA | 5 cut(s) | 93, 625, 846, 1032, 1041 |
| AsuII | TTCGAA | 2 cut(s) | 329, 483 |
| AvaI | CYCGRG | 1 cut(s) | 944 |
| AvaII | GGWCC | 2 cut(s) | 551, 755 |
| BalI | TGGCCA | 1 cut(s) | 1116 |
| BamHI | GGATCC | 2 cut(s) | 109, 1139 |
| BbsI | GAAGAC | 3 cut(s) | 393, 771, 974 |
| BbvI | GCAGC | 3 cut(s) | 553, 877, 935 |
| BccI | CCATC | 6 cut(s) | 106, 290, 620, 698, 935, 1036 |
| BciT130I | CCWGG | 1 cut(s) | 194 |
| BcoDI | GTCTC | 2 cut(s) | 87, 744 |
| BfaI | CTAG | 1 cut(s) | 887 |
| BfuAI | ACCTGC | 1 cut(s) | 1051 |
| BisI | GCNGC | 3 cut(s) | 567, 891, 924 |
| BlpI | GCTNAGC | 1 cut(s) | 961 |
| BlsI | GCNGC | 3 cut(s) | 568, 892, 925 |
| Bme1390I | CCNGG | 1 cut(s) | 194 |
| Bme18I | GGWCC | 2 cut(s) | 551, 755 |
| BmeT110I | CYCGRG | 1 cut(s) | 944 |
| BmgBI | CACGTC | 1 cut(s) | 1099 |
| BmgT120I | GGNCC | 3 cut(s) | 536, 551, 755 |
| BmiI | GGNNCC | 3 cut(s) | 111, 375, 1141 |
| BmrFI | CCNGG | 1 cut(s) | 194 |
| BmrI | ACTGGG | 1 cut(s) | 288 |
| BmsI | GCATC | 3 cut(s) | 553, 1046, 1055 |
| BmuI | ACTGGG | 1 cut(s) | 288 |
| BpiI | GAAGAC | 3 cut(s) | 393, 771, 974 |
| Bpu10I | CCTNAGC | 1 cut(s) | 795 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 961 |
| Bpu14I | TTCGAA | 2 cut(s) | 329, 483 |
| Bsa29I | ATCGAT | 1 cut(s) | 561 |
| BsaHI | GRCGYC | 1 cut(s) | 77 |
| BsaJI | CCNNGG | 3 cut(s) | 657, 758, 980 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 358, 388 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 193, 370, 407, 476, 610 |
| Bse118I | RCCGGY | 1 cut(s) | 1185 |
| Bse1I | ACTGG | 1 cut(s) | 283 |
| BseBI | CCWGG | 1 cut(s) | 194 |
| BseCI | ATCGAT | 1 cut(s) | 561 |
| BseDI | CCNNGG | 3 cut(s) | 657, 758, 980 |
| BseGI | GGATG | 3 cut(s) | 165, 230, 396 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 193, 370, 407, 476, 610 |
| BseMII | CTCAG | 1 cut(s) | 682 |
| BseNI | ACTGG | 1 cut(s) | 283 |
| BseXI | GCAGC | 3 cut(s) | 553, 877, 935 |
| BsgI | GTGCAG | 1 cut(s) | 293 |
| Bsh1236I | CGCG | 2 cut(s) | 314, 698 |
| BshFI | GGCC | 5 cut(s) | 363, 538, 656, 985, 1116 |
| BshVI | ATCGAT | 1 cut(s) | 561 |
| BsiHKCI | CYCGRG | 1 cut(s) | 944 |
| BsiSI | CCGG | 1 cut(s) | 1186 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 193, 370, 407, 476, 610 |
| BsmAI | GTCTC | 2 cut(s) | 87, 744 |
| BsmBI | CGTCTC | 2 cut(s) | 87, 744 |
| BsnI | GGCC | 5 cut(s) | 363, 538, 656, 985, 1116 |
| BsoBI | CYCGRG | 1 cut(s) | 944 |
| Bsp119I | TTCGAA | 2 cut(s) | 329, 483 |
| Bsp143I | GATC | 5 cut(s) | 109, 789, 1139, 1161, 1176 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 961 |
| Bsp19I | CCATGG | 1 cut(s) | 758 |
| BspACI | CCGC | 4 cut(s) | 175, 554, 937, 1137 |
| BspANI | GGCC | 5 cut(s) | 363, 538, 656, 985, 1116 |
| BspCNI | CTCAG | 1 cut(s) | 681 |
| BspDI | ATCGAT | 1 cut(s) | 561 |
| BspFNI | CGCG | 2 cut(s) | 314, 698 |
| BspHI | TCATGA | 2 cut(s) | 91, 430 |
| BspLI | GGNNCC | 3 cut(s) | 111, 375, 1141 |
| BspMI | ACCTGC | 1 cut(s) | 1051 |
| BspPI | GGATC | 6 cut(s) | 104, 117, 784, 1134, 1147, 1184 |
| BspT104I | TTCGAA | 2 cut(s) | 329, 483 |
| BsrBI | CCGCTC | 1 cut(s) | 556 |
| BsrFI | RCCGGY | 1 cut(s) | 1185 |
| BsrI | ACTGG | 1 cut(s) | 283 |
| BssAI | RCCGGY | 1 cut(s) | 1185 |
| BssECI | CCNNGG | 3 cut(s) | 657, 758, 980 |
| BssMI | GATC | 5 cut(s) | 109, 789, 1139, 1161, 1176 |
| BssNI | GRCGYC | 1 cut(s) | 77 |
| BssT1I | CCWWGG | 1 cut(s) | 758 |
| Bst2UI | CCWGG | 1 cut(s) | 194 |
| Bst4CI | ACNGT | 1 cut(s) | 105 |
| Bst6I | CTCTTC | 2 cut(s) | 187, 480 |
| BstACI | GRCGYC | 1 cut(s) | 77 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1043 |
| BstBI | TTCGAA | 2 cut(s) | 329, 483 |
| BstC8I | GCNNGC | 2 cut(s) | 312, 712 |
| BstDEI | CTNAG | 5 cut(s) | 209, 493, 668, 795, 961 |
| BstDSI | CCRYGG | 1 cut(s) | 758 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 191 |
| BstF5I | GGATG | 3 cut(s) | 165, 230, 396 |
| BstFNI | CGCG | 2 cut(s) | 314, 698 |
| BstHHI | GCGC | 1 cut(s) | 316 |
| BstKTI | GATC | 5 cut(s) | 112, 792, 1142, 1164, 1179 |
| BstMAI | GTCTC | 2 cut(s) | 87, 744 |
| BstMBI | GATC | 5 cut(s) | 109, 789, 1139, 1161, 1176 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 890, 1043 |
| BstNI | CCWGG | 1 cut(s) | 194 |
| BstNSI | RCATGY | 1 cut(s) | 501 |
| BstSCI | CCNGG | 1 cut(s) | 192 |
| BstUI | CGCG | 2 cut(s) | 314, 698 |
| BstV1I | GCAGC | 3 cut(s) | 553, 877, 935 |
| BstV2I | GAAGAC | 3 cut(s) | 393, 771, 974 |
| BstX2I | RGATCY | 3 cut(s) | 109, 789, 1139 |
| BstYI | RGATCY | 3 cut(s) | 109, 789, 1139 |
| Bsu15I | ATCGAT | 1 cut(s) | 561 |
| BsuRI | GGCC | 5 cut(s) | 363, 538, 656, 985, 1116 |
| BsuTUI | ATCGAT | 1 cut(s) | 561 |
| BtgI | CCRYGG | 1 cut(s) | 758 |
| BtrI | CACGTC | 1 cut(s) | 1099 |
| BtsCI | GGATG | 3 cut(s) | 165, 230, 396 |
| BveI | ACCTGC | 1 cut(s) | 1051 |
| Cac8I | GCNNGC | 2 cut(s) | 312, 712 |
| CaiI | CAGNNNCTG | 1 cut(s) | 863 |
| CciI | TCATGA | 2 cut(s) | 91, 430 |
| CfoI | GCGC | 1 cut(s) | 316 |
| Cfr10I | RCCGGY | 1 cut(s) | 1185 |
| Cfr13I | GGNCC | 3 cut(s) | 536, 551, 755 |
| ClaI | ATCGAT | 1 cut(s) | 561 |
| CseI | GACGC | 2 cut(s) | 515, 704 |
| CsiI | ACCWGGT | 1 cut(s) | 192 |
| Csp6I | GTAC | 3 cut(s) | 157, 645, 1000 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1106, 1141 |
| CviQI | GTAC | 3 cut(s) | 157, 645, 1000 |
| DdeI | CTNAG | 5 cut(s) | 209, 493, 668, 795, 961 |
| DpnI | GATC | 5 cut(s) | 111, 791, 1141, 1163, 1178 |
| DpnII | GATC | 5 cut(s) | 109, 789, 1139, 1161, 1176 |
| EaeI | YGGCCR | 3 cut(s) | 361, 654, 1114 |
| Eam1104I | CTCTTC | 2 cut(s) | 187, 480 |
| EarI | CTCTTC | 2 cut(s) | 187, 480 |
| Eco130I | CCWWGG | 1 cut(s) | 758 |
| Eco47I | GGWCC | 2 cut(s) | 551, 755 |
| Eco88I | CYCGRG | 1 cut(s) | 944 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 191 |
| EcoRI | GAATTC | 1 cut(s) | 803 |
| EcoRII | CCWGG | 1 cut(s) | 192 |
| EcoT14I | CCWWGG | 1 cut(s) | 758 |
| ErhI | CCWWGG | 1 cut(s) | 758 |
| Esp3I | CGTCTC | 2 cut(s) | 87, 744 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 207, 239 |
| FauNDI | CATATG | 1 cut(s) | 337 |
| FblI | GTMKAC | 1 cut(s) | 573 |
| Fnu4HI | GCNGC | 3 cut(s) | 567, 891, 924 |
| FokI | GGATG | 3 cut(s) | 152, 217, 383 |
| Fsp4HI | GCNGC | 3 cut(s) | 567, 891, 924 |
| FspBI | CTAG | 1 cut(s) | 887 |
| GlaI | GCGC | 1 cut(s) | 315 |
| GluI | GCNGC | 3 cut(s) | 567, 891, 924 |
| HaeIII | GGCC | 5 cut(s) | 363, 538, 656, 985, 1116 |
| HapII | CCGG | 1 cut(s) | 1186 |
| HgaI | GACGC | 2 cut(s) | 515, 704 |
| HhaI | GCGC | 1 cut(s) | 316 |
| Hin1I | GRCGYC | 1 cut(s) | 77 |
| Hin6I | GCGC | 1 cut(s) | 314 |
| HinP1I | GCGC | 1 cut(s) | 314 |
| HincII | GTYRAC | 2 cut(s) | 574, 674 |
| HindII | GTYRAC | 2 cut(s) | 574, 674 |
| HindIII | AAGCTT | 1 cut(s) | 1193 |
| HinfI | GANTC | 6 cut(s) | 64, 227, 331, 419, 860, 904 |
| HpaII | CCGG | 1 cut(s) | 1186 |
| HphI | GGTGA | 5 cut(s) | 93, 625, 846, 1032, 1041 |
| Hpy166II | GTNNAC | 4 cut(s) | 276, 574, 674, 1002 |
| Hpy188I | TCNGA | 4 cut(s) | 109, 248, 981, 1083 |
| Hpy188III | TCNNGA | 5 cut(s) | 92, 224, 431, 946, 1180 |
| Hpy8I | GTNNAC | 4 cut(s) | 276, 574, 674, 1002 |
| Hpy99I | CGWCG | 5 cut(s) | 79, 82, 109, 547, 698 |
| HpyAV | CCTTC | 1 cut(s) | 123 |
| HpyCH4III | ACNGT | 1 cut(s) | 105 |
| HpyCH4IV | ACGT | 4 cut(s) | 77, 368, 542, 1098 |
| HpyCH4V | TGCA | 6 cut(s) | 310, 515, 623, 710, 1037, 1046 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 890, 1043 |
| HpyF3I | CTNAG | 5 cut(s) | 209, 493, 668, 795, 961 |
| HpySE526I | ACGT | 4 cut(s) | 77, 368, 542, 1098 |
| Hsp92I | GRCGYC | 1 cut(s) | 77 |
| HspAI | GCGC | 1 cut(s) | 314 |
| Kzo9I | GATC | 5 cut(s) | 109, 789, 1139, 1161, 1176 |
| LmnI | GCTCC | 1 cut(s) | 379 |
| Lsp1109I | GCAGC | 3 cut(s) | 553, 877, 935 |
| LweI | GCATC | 3 cut(s) | 553, 1046, 1055 |
| MabI | ACCWGGT | 1 cut(s) | 192 |
| MaeI | CTAG | 1 cut(s) | 887 |
| MaeII | ACGT | 4 cut(s) | 77, 368, 542, 1098 |
| MaeIII | GTNAC | 2 cut(s) | 500, 634 |
| MalI | GATC | 5 cut(s) | 111, 791, 1141, 1163, 1178 |
| MbiI | CCGCTC | 1 cut(s) | 556 |
| MboI | GATC | 5 cut(s) | 109, 789, 1139, 1161, 1176 |
| MboII | GAAGA | 7 cut(s) | 163, 174, 398, 497, 598, 776, 979 |
| MflI | RGATCY | 3 cut(s) | 109, 789, 1139 |
| MlsI | TGGCCA | 1 cut(s) | 1116 |
| MluCI | AATT | 8 cut(s) | 13, 463, 510, 599, 803, 826, 993, 1153 |
| MluNI | TGGCCA | 1 cut(s) | 1116 |
| MlyI | GAGTC | 2 cut(s) | 58, 869 |
| MmeI | TCCRAC | 3 cut(s) | 87, 727, 1034 |
| MnlI | CCTC | 8 cut(s) | 197, 430, 481, 635, 652, 765, 975, 1017 |
| Mox20I | TGGCCA | 1 cut(s) | 1116 |
| MscI | TGGCCA | 1 cut(s) | 1116 |
| MseI | TTAA | 1 cut(s) | 20 |
| Msp20I | TGGCCA | 1 cut(s) | 1116 |
| MspA1I | CMGCKG | 1 cut(s) | 1110 |
| MspI | CCGG | 1 cut(s) | 1186 |
| MspR9I | CCNGG | 1 cut(s) | 194 |
| MvaI | CCWGG | 1 cut(s) | 194 |
| MvnI | CGCG | 2 cut(s) | 314, 698 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 890, 1043 |
| NcoI | CCATGG | 1 cut(s) | 758 |
| NdeI | CATATG | 1 cut(s) | 337 |
| NdeII | GATC | 5 cut(s) | 109, 789, 1139, 1161, 1176 |
| NlaIV | GGNNCC | 3 cut(s) | 111, 375, 1141 |
| NmeAIII | GCCGAG | 2 cut(s) | 297, 682 |
| NspI | RCATGY | 1 cut(s) | 501 |
| NspV | TTCGAA | 2 cut(s) | 329, 483 |
| PagI | TCATGA | 2 cut(s) | 91, 430 |
| PaqCI | CACCTGC | 1 cut(s) | 1051 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 318, 414, 962 |
| PfeI | GAWTC | 4 cut(s) | 227, 331, 419, 904 |
| PflFI | GACNNNGTC | 1 cut(s) | 79 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 370, 476, 610 |
| PkrI | GCNGC | 3 cut(s) | 568, 892, 925 |
| PleI | GAGTC | 2 cut(s) | 58, 868 |
| PpsI | GAGTC | 2 cut(s) | 58, 868 |
| Psp1406I | AACGTT | 1 cut(s) | 368 |
| Psp6I | CCWGG | 1 cut(s) | 192 |
| PspGI | CCWGG | 1 cut(s) | 192 |
| PspN4I | GGNNCC | 3 cut(s) | 111, 375, 1141 |
| PspPI | GGNCC | 3 cut(s) | 536, 551, 755 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 924, 956 |
| PstNI | CAGNNNCTG | 1 cut(s) | 863 |
| PsuI | RGATCY | 3 cut(s) | 109, 789, 1139 |
| PsyI | GACNNNGTC | 1 cut(s) | 79 |
| PvuII | CAGCTG | 1 cut(s) | 1110 |
| RsaI | GTAC | 3 cut(s) | 158, 646, 1001 |
| RsaNI | GTAC | 3 cut(s) | 157, 645, 1000 |
| SalI | GTCGAC | 1 cut(s) | 572 |
| SaqAI | TTAA | 1 cut(s) | 20 |
| SatI | GCNGC | 3 cut(s) | 567, 891, 924 |
| Sau3AI | GATC | 5 cut(s) | 109, 789, 1139, 1161, 1176 |
| Sau96I | GGNCC | 3 cut(s) | 536, 551, 755 |
| SchI | GAGTC | 2 cut(s) | 58, 869 |
| ScrFI | CCNGG | 1 cut(s) | 194 |
| SexAI | ACCWGGT | 1 cut(s) | 192 |
| SfaNI | GCATC | 3 cut(s) | 553, 1046, 1055 |
| SfuI | TTCGAA | 2 cut(s) | 329, 483 |
| SinI | GGWCC | 2 cut(s) | 551, 755 |
| Sse9I | AATT | 8 cut(s) | 13, 463, 510, 599, 803, 826, 993, 1153 |
| SsiI | CCGC | 4 cut(s) | 175, 554, 937, 1137 |
| SspMI | CTAG | 1 cut(s) | 887 |
| StyD4I | CCNGG | 1 cut(s) | 192 |
| StyI | CCWWGG | 1 cut(s) | 758 |
| TaaI | ACNGT | 1 cut(s) | 105 |
| TaiI | ACGT | 4 cut(s) | 80, 371, 545, 1101 |
| TasI | AATT | 8 cut(s) | 13, 463, 510, 599, 803, 826, 993, 1153 |
| TfiI | GAWTC | 4 cut(s) | 227, 331, 419, 904 |
| Tru1I | TTAA | 1 cut(s) | 20 |
| Tru9I | TTAA | 1 cut(s) | 20 |
| TseI | GCWGC | 3 cut(s) | 566, 890, 923 |
| TspDTI | ATGAA | 3 cut(s) | 108, 354, 399 |
| TspGWI | ACGGA | 4 cut(s) | 609, 662, 768, 987 |
| Tth111I | GACNNNGTC | 1 cut(s) | 79 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 370, 476, 610 |
| VpaK11BI | GGWCC | 2 cut(s) | 551, 755 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 191 |
| XapI | RAATTY | 3 cut(s) | 13, 803, 826 |
| XceI | RCATGY | 1 cut(s) | 501 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1124 |
| XmiI | GTMKAC | 1 cut(s) | 573 |
| XspI | CTAG | 1 cut(s) | 887 |
| ZraI | GACGTC | 1 cut(s) | 78 |