AT1G79380

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
29860491 .. 29863316
2826 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79380.1

Sequence Viewer

Length: 1206 bp
ATGACTATGGGGAATTTCTTAAAGAGATTTGGAAGTGGAAAAAGCAGAAGCAGTAGAAATATGACTCTGGGAACGACGTCGTCTCAATCTCATGAACCATCACCGTCGGATCCTTCACTCTCCCTTGCCGATAATACCAACGCCACCAAGAAGAAGTACGCTCTCATCCCTGACCGCTTCTCTTCCCTCGACCAGGTATCAAAAGCTCTAAGAGAAGCTGGTCTTGAATCATCCAATCTCATTCTCGGAGTTGATTTCACAAAGAGCAACGAGTGGACTGGGAAAACTTCTTTCGATGGAAAATGTCTGCACGCGCTCGGCGAAACTTCGAATCCATATGAAAAGGCGATTTTTGTAATCGGCCAAACGTTGGCTCCTTTTGATGAAGACAATCTCATCCCTTGTTTCGGCTTTGGCGATTCAACAACTCATGACGAGGAAGTGTTCGGTTTCCATAGCGACAATTCTCCATGTCATGGCTTCGAAGAGGTCTTAGCATGTTACAAGAGAATTGCACCCAACTTGCGTCTATCAGGGCCAACGTCGTATGGACCGCTCATCGATGCTGCTGTCGACATTGTGGAGAAGAACAACGGACAATTCCATGTTCTGGTGATTGTTGCAGATGGACAGGTAACGAGAGGTACGGATATGGCCGAGGGAGAACTCAGTCAACAAGAGAAAACAACCATCGACGCGATTGTAAATGCAAGCTCGTATGCTTTGTCGATTGTTTTAGTCGGTGTTGGAGACGGACCATGGGAAGACATGAGGAAGTTCGATGATAAGATCCCTAAGCGTGAATTCGACAACTTTCAGTTTGTGAATTTCACAGAGATTATGACGAGAAACTCACCAGAGTCTGCCAAAGAAACTGCTTTTGCTCTAGCTGCTCTAATGGAGATTCCCTTTCAGTATCAAGCAGCCATCGAACTCCGCTTACTCGGGAAGCAGACGGGCTTAGCGAAGACAATAGTTCCGAGGCCACCACCAATTCCGTACACACCTCCAACTAATGCTGAACTACCATCAACTGCATCACCTGCATCACCTGAACAAACCCAGAGTTGCCCGATTTGTCTGACTAACCGAAAAGACGTGGCTTTCAGCTGTGGCCACATGACTTGTGGAGATTGCGGATCCAAAATATCAAATTGCCCGATCTGTCGAGTAAGGATCACGAACCGGCTAAAGCTTTACACATGA

Protein Analysis

401

Amino Acids

43.73

Weight (kDa)

5.5

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Copine PF07002 102 - 317 1e-72 Copine
zf-C3HC4_3 PF13920 355 - 395 5.5e-09 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1051
AatII GACGTC 1 cut(s) 80
Acc36I ACCTGC 1 cut(s) 1051
AccB7I CCANNNNNTGG 3 cut(s) 370, 476, 610
AccBSI CCGCTC 1 cut(s) 556
AccI GTMKAC 1 cut(s) 573
AccII CGCG 2 cut(s) 314, 698
AciI CCGC 4 cut(s) 175, 554, 937, 1137
AclI AACGTT 1 cut(s) 368
AclWI GGATC 6 cut(s) 104, 117, 784, 1134, 1147, 1184
AcoI YGGCCR 3 cut(s) 361, 654, 1114
AcsI RAATTY 3 cut(s) 13, 803, 826
AcyI GRCGYC 1 cut(s) 77
AfaI GTAC 3 cut(s) 158, 646, 1001
AfiI CCNNNNNNNGG 5 cut(s) 193, 370, 407, 476, 610
AgsI TTSAA 2 cut(s) 227, 423
AjiI CACGTC 1 cut(s) 1099
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 6 cut(s) 206, 218, 714, 890, 1110, 1195
AluI AGCT 6 cut(s) 206, 218, 714, 890, 1110, 1195
Alw26I GTCTC 2 cut(s) 87, 744
AlwI GGATC 6 cut(s) 104, 117, 784, 1134, 1147, 1184
AlwNI CAGNNNCTG 1 cut(s) 863
Ama87I CYCGRG 1 cut(s) 944
AoxI GGCC 5 cut(s) 361, 536, 654, 983, 1114
ApeKI GCWGC 3 cut(s) 566, 890, 923
ApoI RAATTY 3 cut(s) 13, 803, 826
AspLEI GCGC 1 cut(s) 316
AspS9I GGNCC 3 cut(s) 536, 551, 755
AsuHPI GGTGA 5 cut(s) 93, 625, 846, 1032, 1041
AsuII TTCGAA 2 cut(s) 329, 483
AvaI CYCGRG 1 cut(s) 944
AvaII GGWCC 2 cut(s) 551, 755
BalI TGGCCA 1 cut(s) 1116
BamHI GGATCC 2 cut(s) 109, 1139
BbsI GAAGAC 3 cut(s) 393, 771, 974
BbvI GCAGC 3 cut(s) 553, 877, 935
BccI CCATC 6 cut(s) 106, 290, 620, 698, 935, 1036
BciT130I CCWGG 1 cut(s) 194
BcoDI GTCTC 2 cut(s) 87, 744
BfaI CTAG 1 cut(s) 887
BfuAI ACCTGC 1 cut(s) 1051
BisI GCNGC 3 cut(s) 567, 891, 924
BlpI GCTNAGC 1 cut(s) 961
BlsI GCNGC 3 cut(s) 568, 892, 925
Bme1390I CCNGG 1 cut(s) 194
Bme18I GGWCC 2 cut(s) 551, 755
BmeT110I CYCGRG 1 cut(s) 944
BmgBI CACGTC 1 cut(s) 1099
BmgT120I GGNCC 3 cut(s) 536, 551, 755
BmiI GGNNCC 3 cut(s) 111, 375, 1141
BmrFI CCNGG 1 cut(s) 194
BmrI ACTGGG 1 cut(s) 288
BmsI GCATC 3 cut(s) 553, 1046, 1055
BmuI ACTGGG 1 cut(s) 288
BpiI GAAGAC 3 cut(s) 393, 771, 974
Bpu10I CCTNAGC 1 cut(s) 795
Bpu1102I GCTNAGC 1 cut(s) 961
Bpu14I TTCGAA 2 cut(s) 329, 483
Bsa29I ATCGAT 1 cut(s) 561
BsaHI GRCGYC 1 cut(s) 77
BsaJI CCNNGG 3 cut(s) 657, 758, 980
BsaXI ACNNNNNCTCC 2 cut(s) 358, 388
Bsc4I CCNNNNNNNGG 5 cut(s) 193, 370, 407, 476, 610
Bse118I RCCGGY 1 cut(s) 1185
Bse1I ACTGG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 194
BseCI ATCGAT 1 cut(s) 561
BseDI CCNNGG 3 cut(s) 657, 758, 980
BseGI GGATG 3 cut(s) 165, 230, 396
BseLI CCNNNNNNNGG 5 cut(s) 193, 370, 407, 476, 610
BseMII CTCAG 1 cut(s) 682
BseNI ACTGG 1 cut(s) 283
BseXI GCAGC 3 cut(s) 553, 877, 935
BsgI GTGCAG 1 cut(s) 293
Bsh1236I CGCG 2 cut(s) 314, 698
BshFI GGCC 5 cut(s) 363, 538, 656, 985, 1116
BshVI ATCGAT 1 cut(s) 561
BsiHKCI CYCGRG 1 cut(s) 944
BsiSI CCGG 1 cut(s) 1186
BslI CCNNNNNNNGG 5 cut(s) 193, 370, 407, 476, 610
BsmAI GTCTC 2 cut(s) 87, 744
BsmBI CGTCTC 2 cut(s) 87, 744
BsnI GGCC 5 cut(s) 363, 538, 656, 985, 1116
BsoBI CYCGRG 1 cut(s) 944
Bsp119I TTCGAA 2 cut(s) 329, 483
Bsp143I GATC 5 cut(s) 109, 789, 1139, 1161, 1176
Bsp1720I GCTNAGC 1 cut(s) 961
Bsp19I CCATGG 1 cut(s) 758
BspACI CCGC 4 cut(s) 175, 554, 937, 1137
BspANI GGCC 5 cut(s) 363, 538, 656, 985, 1116
BspCNI CTCAG 1 cut(s) 681
BspDI ATCGAT 1 cut(s) 561
BspFNI CGCG 2 cut(s) 314, 698
BspHI TCATGA 2 cut(s) 91, 430
BspLI GGNNCC 3 cut(s) 111, 375, 1141
BspMI ACCTGC 1 cut(s) 1051
BspPI GGATC 6 cut(s) 104, 117, 784, 1134, 1147, 1184
BspT104I TTCGAA 2 cut(s) 329, 483
BsrBI CCGCTC 1 cut(s) 556
BsrFI RCCGGY 1 cut(s) 1185
BsrI ACTGG 1 cut(s) 283
BssAI RCCGGY 1 cut(s) 1185
BssECI CCNNGG 3 cut(s) 657, 758, 980
BssMI GATC 5 cut(s) 109, 789, 1139, 1161, 1176
BssNI GRCGYC 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 758
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 105
Bst6I CTCTTC 2 cut(s) 187, 480
BstACI GRCGYC 1 cut(s) 77
BstAPI GCANNNNNTGC 1 cut(s) 1043
BstBI TTCGAA 2 cut(s) 329, 483
BstC8I GCNNGC 2 cut(s) 312, 712
BstDEI CTNAG 5 cut(s) 209, 493, 668, 795, 961
BstDSI CCRYGG 1 cut(s) 758
BstENI CCTNNNNNAGG 1 cut(s) 191
BstF5I GGATG 3 cut(s) 165, 230, 396
BstFNI CGCG 2 cut(s) 314, 698
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 5 cut(s) 112, 792, 1142, 1164, 1179
BstMAI GTCTC 2 cut(s) 87, 744
BstMBI GATC 5 cut(s) 109, 789, 1139, 1161, 1176
BstMWI GCNNNNNNNGC 2 cut(s) 890, 1043
BstNI CCWGG 1 cut(s) 194
BstNSI RCATGY 1 cut(s) 501
BstSCI CCNGG 1 cut(s) 192
BstUI CGCG 2 cut(s) 314, 698
BstV1I GCAGC 3 cut(s) 553, 877, 935
BstV2I GAAGAC 3 cut(s) 393, 771, 974
BstX2I RGATCY 3 cut(s) 109, 789, 1139
BstYI RGATCY 3 cut(s) 109, 789, 1139
Bsu15I ATCGAT 1 cut(s) 561
BsuRI GGCC 5 cut(s) 363, 538, 656, 985, 1116
BsuTUI ATCGAT 1 cut(s) 561
BtgI CCRYGG 1 cut(s) 758
BtrI CACGTC 1 cut(s) 1099
BtsCI GGATG 3 cut(s) 165, 230, 396
BveI ACCTGC 1 cut(s) 1051
Cac8I GCNNGC 2 cut(s) 312, 712
CaiI CAGNNNCTG 1 cut(s) 863
CciI TCATGA 2 cut(s) 91, 430
CfoI GCGC 1 cut(s) 316
Cfr10I RCCGGY 1 cut(s) 1185
Cfr13I GGNCC 3 cut(s) 536, 551, 755
ClaI ATCGAT 1 cut(s) 561
CseI GACGC 2 cut(s) 515, 704
CsiI ACCWGGT 1 cut(s) 192
Csp6I GTAC 3 cut(s) 157, 645, 1000
CspCI CAANNNNNGTGG 2 cut(s) 1106, 1141
CviQI GTAC 3 cut(s) 157, 645, 1000
DdeI CTNAG 5 cut(s) 209, 493, 668, 795, 961
DpnI GATC 5 cut(s) 111, 791, 1141, 1163, 1178
DpnII GATC 5 cut(s) 109, 789, 1139, 1161, 1176
EaeI YGGCCR 3 cut(s) 361, 654, 1114
Eam1104I CTCTTC 2 cut(s) 187, 480
EarI CTCTTC 2 cut(s) 187, 480
Eco130I CCWWGG 1 cut(s) 758
Eco47I GGWCC 2 cut(s) 551, 755
Eco88I CYCGRG 1 cut(s) 944
EcoNI CCTNNNNNAGG 1 cut(s) 191
EcoRI GAATTC 1 cut(s) 803
EcoRII CCWGG 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 758
ErhI CCWWGG 1 cut(s) 758
Esp3I CGTCTC 2 cut(s) 87, 744
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FauNDI CATATG 1 cut(s) 337
FblI GTMKAC 1 cut(s) 573
Fnu4HI GCNGC 3 cut(s) 567, 891, 924
FokI GGATG 3 cut(s) 152, 217, 383
Fsp4HI GCNGC 3 cut(s) 567, 891, 924
FspBI CTAG 1 cut(s) 887
GlaI GCGC 1 cut(s) 315
GluI GCNGC 3 cut(s) 567, 891, 924
HaeIII GGCC 5 cut(s) 363, 538, 656, 985, 1116
HapII CCGG 1 cut(s) 1186
HgaI GACGC 2 cut(s) 515, 704
HhaI GCGC 1 cut(s) 316
Hin1I GRCGYC 1 cut(s) 77
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HincII GTYRAC 2 cut(s) 574, 674
HindII GTYRAC 2 cut(s) 574, 674
HindIII AAGCTT 1 cut(s) 1193
HinfI GANTC 6 cut(s) 64, 227, 331, 419, 860, 904
HpaII CCGG 1 cut(s) 1186
HphI GGTGA 5 cut(s) 93, 625, 846, 1032, 1041
Hpy166II GTNNAC 4 cut(s) 276, 574, 674, 1002
Hpy188I TCNGA 4 cut(s) 109, 248, 981, 1083
Hpy188III TCNNGA 5 cut(s) 92, 224, 431, 946, 1180
Hpy8I GTNNAC 4 cut(s) 276, 574, 674, 1002
Hpy99I CGWCG 5 cut(s) 79, 82, 109, 547, 698
HpyAV CCTTC 1 cut(s) 123
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4IV ACGT 4 cut(s) 77, 368, 542, 1098
HpyCH4V TGCA 6 cut(s) 310, 515, 623, 710, 1037, 1046
HpyF10VI GCNNNNNNNGC 2 cut(s) 890, 1043
HpyF3I CTNAG 5 cut(s) 209, 493, 668, 795, 961
HpySE526I ACGT 4 cut(s) 77, 368, 542, 1098
Hsp92I GRCGYC 1 cut(s) 77
HspAI GCGC 1 cut(s) 314
Kzo9I GATC 5 cut(s) 109, 789, 1139, 1161, 1176
LmnI GCTCC 1 cut(s) 379
Lsp1109I GCAGC 3 cut(s) 553, 877, 935
LweI GCATC 3 cut(s) 553, 1046, 1055
MabI ACCWGGT 1 cut(s) 192
MaeI CTAG 1 cut(s) 887
MaeII ACGT 4 cut(s) 77, 368, 542, 1098
MaeIII GTNAC 2 cut(s) 500, 634
MalI GATC 5 cut(s) 111, 791, 1141, 1163, 1178
MbiI CCGCTC 1 cut(s) 556
MboI GATC 5 cut(s) 109, 789, 1139, 1161, 1176
MboII GAAGA 7 cut(s) 163, 174, 398, 497, 598, 776, 979
MflI RGATCY 3 cut(s) 109, 789, 1139
MlsI TGGCCA 1 cut(s) 1116
MluCI AATT 8 cut(s) 13, 463, 510, 599, 803, 826, 993, 1153
MluNI TGGCCA 1 cut(s) 1116
MlyI GAGTC 2 cut(s) 58, 869
MmeI TCCRAC 3 cut(s) 87, 727, 1034
MnlI CCTC 8 cut(s) 197, 430, 481, 635, 652, 765, 975, 1017
Mox20I TGGCCA 1 cut(s) 1116
MscI TGGCCA 1 cut(s) 1116
MseI TTAA 1 cut(s) 20
Msp20I TGGCCA 1 cut(s) 1116
MspA1I CMGCKG 1 cut(s) 1110
MspI CCGG 1 cut(s) 1186
MspR9I CCNGG 1 cut(s) 194
MvaI CCWGG 1 cut(s) 194
MvnI CGCG 2 cut(s) 314, 698
MwoI GCNNNNNNNGC 2 cut(s) 890, 1043
NcoI CCATGG 1 cut(s) 758
NdeI CATATG 1 cut(s) 337
NdeII GATC 5 cut(s) 109, 789, 1139, 1161, 1176
NlaIV GGNNCC 3 cut(s) 111, 375, 1141
NmeAIII GCCGAG 2 cut(s) 297, 682
NspI RCATGY 1 cut(s) 501
NspV TTCGAA 2 cut(s) 329, 483
PagI TCATGA 2 cut(s) 91, 430
PaqCI CACCTGC 1 cut(s) 1051
PcsI WCGNNNNNNNCGW 3 cut(s) 318, 414, 962
PfeI GAWTC 4 cut(s) 227, 331, 419, 904
PflFI GACNNNGTC 1 cut(s) 79
PflMI CCANNNNNTGG 3 cut(s) 370, 476, 610
PkrI GCNGC 3 cut(s) 568, 892, 925
PleI GAGTC 2 cut(s) 58, 868
PpsI GAGTC 2 cut(s) 58, 868
Psp1406I AACGTT 1 cut(s) 368
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 3 cut(s) 111, 375, 1141
PspPI GGNCC 3 cut(s) 536, 551, 755
PsrI GAACNNNNNNTAC 2 cut(s) 924, 956
PstNI CAGNNNCTG 1 cut(s) 863
PsuI RGATCY 3 cut(s) 109, 789, 1139
PsyI GACNNNGTC 1 cut(s) 79
PvuII CAGCTG 1 cut(s) 1110
RsaI GTAC 3 cut(s) 158, 646, 1001
RsaNI GTAC 3 cut(s) 157, 645, 1000
SalI GTCGAC 1 cut(s) 572
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 3 cut(s) 567, 891, 924
Sau3AI GATC 5 cut(s) 109, 789, 1139, 1161, 1176
Sau96I GGNCC 3 cut(s) 536, 551, 755
SchI GAGTC 2 cut(s) 58, 869
ScrFI CCNGG 1 cut(s) 194
SexAI ACCWGGT 1 cut(s) 192
SfaNI GCATC 3 cut(s) 553, 1046, 1055
SfuI TTCGAA 2 cut(s) 329, 483
SinI GGWCC 2 cut(s) 551, 755
Sse9I AATT 8 cut(s) 13, 463, 510, 599, 803, 826, 993, 1153
SsiI CCGC 4 cut(s) 175, 554, 937, 1137
SspMI CTAG 1 cut(s) 887
StyD4I CCNGG 1 cut(s) 192
StyI CCWWGG 1 cut(s) 758
TaaI ACNGT 1 cut(s) 105
TaiI ACGT 4 cut(s) 80, 371, 545, 1101
TasI AATT 8 cut(s) 13, 463, 510, 599, 803, 826, 993, 1153
TfiI GAWTC 4 cut(s) 227, 331, 419, 904
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TseI GCWGC 3 cut(s) 566, 890, 923
TspDTI ATGAA 3 cut(s) 108, 354, 399
TspGWI ACGGA 4 cut(s) 609, 662, 768, 987
Tth111I GACNNNGTC 1 cut(s) 79
Van91I CCANNNNNTGG 3 cut(s) 370, 476, 610
VpaK11BI GGWCC 2 cut(s) 551, 755
XagI CCTNNNNNAGG 1 cut(s) 191
XapI RAATTY 3 cut(s) 13, 803, 826
XceI RCATGY 1 cut(s) 501
XcmI CCANNNNNNNNNTGG 1 cut(s) 1124
XmiI GTMKAC 1 cut(s) 573
XspI CTAG 1 cut(s) 887
ZraI GACGTC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.