Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008572

Physical Location & Seq

Genomic Coordinates Reverse (-)

6735093 .. 6738521

Gene Structure 3429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0077700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGGATAAAATGGACACTTCTAATGGCATAGCATGGTTTGGGAACATTTTCCAGAAGTTTGAAGATATGTATCATGATGTGGATGAACTAGTGAAGCAGGCTGAAAGCCAGTTGGTGACGGTGGGTGCCAATGTTAAAAACTTTTTTGCAGAGTTAGACTTAATAGGAGATGCAGTCCCTCAATCTTTGGTGGATAAAAAGCCAGGGGCTGCTCCTGGTACATCTGTGGTACAGAAGACTGATGATGCAGTCGGTATAAAGTCGCTGGAGGGCACTGATGGAGGCTGTGGTGATGGAGTCCACATAGGTTCTGTGTTATCTGTTAAGAGTGTTTCTTCTGGTTTATCATTGGAACAAGTTGATGATAATCAGACACCTGACAAGAAAGATTCAATCAATGCTAATCAAGAAATTGGATTGGATATTGGAGCCAAATTGTTAATTCCAGCCTCAGATGATGTAGGAGAGTGTAACTCTTTCACGGAGCCAGAGGACAGAAGTACAAACCTTGTCGATATGTCTTCAAAATTTTCAGATGAGAAGAAAGACTCGAGCAATGCAAATGAAGAAATTGGATTGGACAGTGGAGCCAAGTTGTTAATTCCAGCCTTGGATGATATAGGAGGGTTTAACTCTTTCATGGAAACAGAGGACAGAAGTAGAAACCTTGTTGATTTGTGTTCAAAAATTTCAGATGACATGCGACTCTCTAACGCTCTTGAAATGGATATTCTCTGTAAGAAAAGCACTGCAGGTAATACTGCAGCTAATTTGCCCATATTTGCAACAGAGCCCGAGGGGCTTGAACTGTATGATAGTTCTAGTTGTGATGAATCAAAGACAACCATGCATTTTCCCGGAACTGCTTTACTTAATGAAGCTCGCTCTCATGGTTCCATTTTAGAAGAGGCAGACAATGATGTTACCGACTCGGGCTTGCAAACTTTGGGATCATTGAACAAGGTGGAGCTTGGTGAAAGTTGCATTGTAGTAGACTGTACTGAACTTGAATGCAGTTCTGGTGAAGCTGTTAAGCGCAGGTCTTACAAGAAAAAATTGAGGGACGCATTTGTTTCAAGAATGAGACTGTTGAAGAAGCAGAATAATGATGAACTGAGGAACAGTTTTGCAACACTCACACTCCCTGAGAAACCAAATTCGCCTGATTATGAATTTTTTGAATCCGACTGGGAAATTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR

Protein Analysis

400

Amino Acids

43.39

Weight (kDa)

4.38

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79380
fragaria_vesca	FvH4_3g13940 FvH4_3g13940 FvH4_3g13940 FvH4_3g13940
malus_domestica	MD05G1239600.v1.1 MD10G1217900.v1.1
prunus_persica	Prupe.4G126200_v2.0.a1 Prupe.4G126200_v2.0.a1
pyrus_communis	pycom05g21590 pycom10g18370
rosa_chinensis	RchiOBHm_Chr5g0023161
rosa_laevigata	RLG00000032704
rosa_multiflora	Rmu_sc0007300.1_g000015
rosa_roxburghii	Rroxscaffold_1G00056180
rosa_rugosa	Rorug05G0077700 Rorug05G0077700 Rorug05G0077700
rosa_samantha	Rh5AG163800 Rh5BG163100 Rh5CG178100 Rh5DG164500
rosa_wichuraiana	Rw5G014780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	743, 1029
AccB1I	GGYRCC	1 cut(s)	125
AccI	GTMKAC	1 cut(s)	993
AclWI	GGATC	1 cut(s)	958
AcsI	RAATTY	4 cut(s)	527, 687, 1156, 1172
AfaI	GTAC	4 cut(s)	220, 231, 502, 1000
AhlI	ACTAGT	1 cut(s)	88
AjnI	CCWGG	2 cut(s)	202, 214
AluBI	AGCT	4 cut(s)	767, 881, 970, 1028
AluI	AGCT	4 cut(s)	767, 881, 970, 1028
Alw26I	GTCTC	1 cut(s)	1078
AlwI	GGATC	1 cut(s)	958
AlwNI	CAGNNNCTG	1 cut(s)	209
Ama87I	CYCGRG	3 cut(s)	550, 794, 931
ApeKI	GCWGC	2 cut(s)	209, 764
ApoI	RAATTY	4 cut(s)	527, 687, 1156, 1172
Asp700I	GAANNNNTTC	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	1038
AsuC2I	CCSGG	1 cut(s)	858
AsuHPI	GGTGA	4 cut(s)	127, 302, 986, 1034
AvaI	CYCGRG	3 cut(s)	550, 794, 931
BaeGI	GKGCMC	1 cut(s)	275
BaeI	ACNNNNGTAYC	2 cut(s)	210, 243
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	795
BbsI	GAAGAC	2 cut(s)	242, 513
BbvI	GCAGC	2 cut(s)	196, 776
BccI	CCATC	2 cut(s)	272, 287
BciT130I	CCWGG	2 cut(s)	204, 216
BcnI	CCSGG	1 cut(s)	858
BcoDI	GTCTC	1 cut(s)	1078
BcuI	ACTAGT	1 cut(s)	88
BfaI	CTAG	2 cut(s)	89, 822
BfmI	CTRYAG	2 cut(s)	750, 762
BfuAI	ACCTGC	2 cut(s)	743, 1029
BglI	GCCNNNNNGGC	1 cut(s)	799
BisI	GCNGC	2 cut(s)	210, 765
BlsI	GCNGC	2 cut(s)	211, 766
Bme1390I	CCNGG	3 cut(s)	204, 216, 858
BmeT110I	CYCGRG	3 cut(s)	550, 794, 931
BmiI	GGNNCC	5 cut(s)	127, 430, 486, 589, 895
BmrFI	CCNGG	3 cut(s)	204, 216, 858
BmrI	ACTGGG	1 cut(s)	1198
BmsI	GCATC	2 cut(s)	160, 235
BmuI	ACTGGG	1 cut(s)	1198
BpiI	GAAGAC	2 cut(s)	242, 513
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
BpmI	CTGGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	858
BsaBI	GATNNNNATC	2 cut(s)	69, 366
BsaJI	CCNNGG	3 cut(s)	203, 609, 795
BsaXI	ACNNNNNCTCC	4 cut(s)	159, 189, 1125, 1155
Bse1I	ACTGG	2 cut(s)	109, 1193
Bse3DI	GCAATG	1 cut(s)	562
Bse8I	GATNNNNATC	2 cut(s)	69, 366
BseBI	CCWGG	2 cut(s)	204, 216
BseDI	CCNNGG	3 cut(s)	203, 609, 795
BseGI	GGATG	2 cut(s)	88, 619
BseJI	GATNNNNATC	2 cut(s)	69, 366
BseMI	GCAATG	1 cut(s)	562
BseMII	CTCAG	3 cut(s)	465, 1106, 1137
BseNI	ACTGG	2 cut(s)	109, 1193
BseSI	GKGCMC	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	196, 776
BshNI	GGYRCC	1 cut(s)	125
BsiHKCI	CYCGRG	3 cut(s)	550, 794, 931
BsiSI	CCGG	1 cut(s)	858
BslFI	GGGAC	2 cut(s)	161, 1076
BsmAI	GTCTC	1 cut(s)	1078
BsmFI	GGGAC	2 cut(s)	161, 1076
BsmI	GAATGC	1 cut(s)	1016
BsoBI	CYCGRG	3 cut(s)	550, 794, 931
Bsp1286I	GDGCHC	2 cut(s)	275, 795
Bsp143I	GATC	1 cut(s)	950
BspCNI	CTCAG	3 cut(s)	464, 1107, 1138
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	5 cut(s)	127, 430, 486, 589, 895
BspMAI	CTGCAG	2 cut(s)	754, 766
BspMI	ACCTGC	2 cut(s)	743, 1029
BspPI	GGATC	1 cut(s)	958
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	562
BsrI	ACTGG	2 cut(s)	109, 1193
BssECI	CCNNGG	3 cut(s)	203, 609, 795
BssMI	GATC	1 cut(s)	950
BssT1I	CCWWGG	1 cut(s)	609
Bst2UI	CCWGG	2 cut(s)	204, 216
Bst4CI	ACNGT	6 cut(s)	121, 584, 810, 998, 1089, 1124
Bst6I	CTCTTC	1 cut(s)	900
BstC8I	GCNNGC	3 cut(s)	99, 883, 938
BstDEI	CTNAG	3 cut(s)	451, 1115, 1146
BstF5I	GGATG	2 cut(s)	88, 619
BstHHI	GCGC	1 cut(s)	1038
BstKTI	GATC	1 cut(s)	953
BstMAI	GTCTC	1 cut(s)	1078
BstMBI	GATC	1 cut(s)	950
BstMWI	GCNNNNNNNGC	1 cut(s)	799
BstNI	CCWGG	2 cut(s)	204, 216
BstNSI	RCATGY	1 cut(s)	703
BstSCI	CCNGG	3 cut(s)	202, 214, 856
BstSFI	CTRYAG	2 cut(s)	750, 762
BstSLI	GKGCMC	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	196, 776
BstV2I	GAAGAC	2 cut(s)	242, 513
BtsCI	GGATG	2 cut(s)	88, 619
BtsI	GCAGTG	1 cut(s)	747
BtsIMutI	CAGTG	3 cut(s)	273, 589, 747
BveI	ACCTGC	2 cut(s)	743, 1029
Cac8I	GCNNGC	3 cut(s)	99, 883, 938
CaiI	CAGNNNCTG	1 cut(s)	209
CciI	TCATGA	1 cut(s)	73
CfoI	GCGC	1 cut(s)	1038
CseI	GACGC	1 cut(s)	1073
Csp6I	GTAC	4 cut(s)	219, 230, 501, 999
CviAII	CATG	6 cut(s)	33, 74, 640, 700, 847, 890
CviQI	GTAC	4 cut(s)	219, 230, 501, 999
DdeI	CTNAG	3 cut(s)	451, 1115, 1146
DpnI	GATC	1 cut(s)	952
DpnII	GATC	1 cut(s)	950
Eam1104I	CTCTTC	1 cut(s)	900
EarI	CTCTTC	1 cut(s)	900
Eco130I	CCWWGG	1 cut(s)	609
Eco24I	GRGCYC	1 cut(s)	795
Eco88I	CYCGRG	3 cut(s)	550, 794, 931
EcoRII	CCWGG	2 cut(s)	202, 214
EcoT14I	CCWWGG	1 cut(s)	609
EcoT22I	ATGCAT	1 cut(s)	852
EcoT38I	GRGCYC	1 cut(s)	795
ErhI	CCWWGG	1 cut(s)	609
FaeI	CATG	6 cut(s)	36, 77, 643, 703, 850, 893
FaqI	GGGAC	2 cut(s)	161, 1076
FatI	CATG	6 cut(s)	32, 73, 639, 699, 846, 889
FblI	GTMKAC	1 cut(s)	993
Fnu4HI	GCNGC	2 cut(s)	210, 765
FokI	GGATG	2 cut(s)	95, 626
FriOI	GRGCYC	1 cut(s)	795
Fsp4HI	GCNGC	2 cut(s)	210, 765
FspBI	CTAG	2 cut(s)	89, 822
GlaI	GCGC	1 cut(s)	1037
GluI	GCNGC	2 cut(s)	210, 765
GsuI	CTGGAG	1 cut(s)	287
HapII	CCGG	1 cut(s)	858
HgaI	GACGC	1 cut(s)	1073
HhaI	GCGC	1 cut(s)	1038
Hin1II	CATG	6 cut(s)	36, 77, 643, 703, 850, 893
Hin6I	GCGC	1 cut(s)	1036
HinP1I	GCGC	1 cut(s)	1036
HinfI	GANTC	7 cut(s)	297, 389, 548, 705, 833, 929, 1181
HpaII	CCGG	1 cut(s)	858
HphI	GGTGA	4 cut(s)	127, 302, 986, 1034
Hpy166II	GTNNAC	2 cut(s)	301, 994
Hpy188I	TCNGA	5 cut(s)	372, 454, 535, 694, 1186
Hpy188III	TCNNGA	5 cut(s)	52, 74, 407, 719, 1077
Hpy8I	GTNNAC	2 cut(s)	301, 994
HpyCH4III	ACNGT	6 cut(s)	121, 584, 810, 998, 1089, 1124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	799
HpyF3I	CTNAG	3 cut(s)	451, 1115, 1146
Hsp92II	CATG	6 cut(s)	36, 77, 643, 703, 850, 893
HspAI	GCGC	1 cut(s)	1036
Kzo9I	GATC	1 cut(s)	950
LmnI	GCTCC	5 cut(s)	217, 428, 484, 587, 967
Lsp1109I	GCAGC	2 cut(s)	196, 776
LweI	GCATC	2 cut(s)	160, 235
MaeI	CTAG	2 cut(s)	89, 822
MaeIII	GTNAC	3 cut(s)	115, 470, 922
MalI	GATC	1 cut(s)	952
MboI	GATC	1 cut(s)	950
MboII	GAAGA	8 cut(s)	74, 247, 327, 513, 553, 578, 917, 1105
MhlI	GDGCHC	2 cut(s)	275, 795
MlyI	GAGTC	4 cut(s)	306, 542, 699, 923
Mph1103I	ATGCAT	1 cut(s)	852
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	8 cut(s)	135, 161, 324, 440, 599, 630, 873, 1032
MspI	CCGG	1 cut(s)	858
MspR9I	CCNGG	3 cut(s)	204, 216, 858
Mva1269I	GAATGC	1 cut(s)	1016
MvaI	CCWGG	2 cut(s)	204, 216
MwoI	GCNNNNNNNGC	1 cut(s)	799
NciI	CCSGG	1 cut(s)	858
NdeII	GATC	1 cut(s)	950
NlaIII	CATG	6 cut(s)	36, 77, 643, 703, 850, 893
NlaIV	GGNNCC	5 cut(s)	127, 430, 486, 589, 895
NmuCI	GTSAC	1 cut(s)	115
NsiI	ATGCAT	1 cut(s)	852
NspI	RCATGY	1 cut(s)	703
PaeR7I	CTCGAG	1 cut(s)	550
PagI	TCATGA	1 cut(s)	73
PctI	GAATGC	1 cut(s)	1016
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	3 cut(s)	389, 833, 1181
PfoI	TCCNGGA	1 cut(s)	856
PkrI	GCNGC	2 cut(s)	211, 766
PleI	GAGTC	4 cut(s)	305, 542, 699, 923
PpsI	GAGTC	4 cut(s)	305, 542, 699, 923
Psp6I	CCWGG	2 cut(s)	202, 214
PspGI	CCWGG	2 cut(s)	202, 214
PspN4I	GGNNCC	5 cut(s)	127, 430, 486, 589, 895
PspXI	VCTCGAGB	1 cut(s)	550
PstI	CTGCAG	2 cut(s)	754, 766
PstNI	CAGNNNCTG	1 cut(s)	209
RsaI	GTAC	4 cut(s)	220, 231, 502, 1000
RsaNI	GTAC	4 cut(s)	219, 230, 501, 999
SaqAI	TTAA	8 cut(s)	135, 161, 324, 440, 599, 630, 873, 1032
SatI	GCNGC	2 cut(s)	210, 765
Sau3AI	GATC	1 cut(s)	950
SchI	GAGTC	4 cut(s)	306, 542, 699, 923
ScrFI	CCNGG	3 cut(s)	204, 216, 858
SduI	GDGCHC	2 cut(s)	275, 795
SfaNI	GCATC	2 cut(s)	160, 235
SfcI	CTRYAG	2 cut(s)	750, 762
Sfr274I	CTCGAG	1 cut(s)	550
SlaI	CTCGAG	1 cut(s)	550
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
SpeI	ACTAGT	1 cut(s)	88
SspMI	CTAG	2 cut(s)	89, 822
StyD4I	CCNGG	3 cut(s)	202, 214, 856
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	6 cut(s)	121, 584, 810, 998, 1089, 1124
TaqI	TCGA	2 cut(s)	513, 551
TatI	WGTACW	2 cut(s)	500, 998
TfiI	GAWTC	3 cut(s)	389, 833, 1181
Tru1I	TTAA	8 cut(s)	135, 161, 324, 440, 599, 630, 873, 1032
Tru9I	TTAA	8 cut(s)	135, 161, 324, 440, 599, 630, 873, 1032
TscAI	CASTG	3 cut(s)	280, 589, 754
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	2 cut(s)	209, 764
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	7 cut(s)	99, 579, 628, 846, 891, 1125, 1185
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	3 cut(s)	280, 589, 754
XapI	RAATTY	4 cut(s)	527, 687, 1156, 1172
XceI	RCATGY	1 cut(s)	703
XhoI	CTCGAG	1 cut(s)	550
XmiI	GTMKAC	1 cut(s)	993
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	2 cut(s)	89, 822
Zsp2I	ATGCAT	1 cut(s)	852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.