Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008572

Physical Location & Seq

Genomic Coordinates Forward (+)

8383741 .. 8389018

Gene Structure 5278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13940.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGGAGGCGTTATGTCATTCTTCAAGAGGAGAAGCAATACAACCGGCGACACCAGCGGCAGCAGCAATAGCGGCAGCGTGAATAGGAGAACGGCGTCGTATGGTTCGAAGAAATCATCAACCAGTGGTGATAAAGCTGCACATACAGTAACCCAGAAGAAGCATAAGTACTCGTATATTCCTGATAACTTCACATCCATTGAACAGGTTACAGATGCATTGAGAAAAGAAGGATTAGAGTCATCTAATCTCATTGTTGGAATCGACTTCACTAAAAGCAATGAATGGACAGGCAAAAAGTCGTTTAACAATCGAAGCCTACACGCCATTGGAGATGCACCTAATCCATACGAAAAGGCTATCTCTATAATCGGAAAAACTTTGTCTCCCTTTGATGAAGACAACTTAATTCCTTGTTTTGGCTTTGGTGATGCTACCACTCATGATCAAGAGGTGTTCAGCTTTCACACTGATCATTCACCCTGTCATGGTTTTGAAGAAGTTTTGACCTGCTACAAAAGAATAGTTCCTACTTTACGATTATCAGGGCCAACTTCTTATGGACCTGTAATTGAGGCTGCAATGGACATTGTGGAGAAAAGTGCAGGTCAATACCATGTGTTAGTTATCATTGCAGATGGCCAGGTTCAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009308 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009690 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009850 GO:0009867 GO:0009987 GO:0010033 GO:0010817 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023052 GO:0032446 GO:0032870 GO:0034754 GO:0036211 GO:0042221 GO:0042445 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0080148 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Copine zf-C3HC4_3

Protein Analysis

219

Amino Acids

23.78

Weight (kDa)

6.7

Isoelectric Point (pI)

34.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Copine	PF07002	106 - 318	5.3e-73	Copine
zf-C3HC4_3	PF13920	362 - 403	1.5e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79380
fragaria_vesca	FvH4_3g13940 FvH4_3g13940 FvH4_3g13940 FvH4_3g13940
malus_domestica	MD05G1239600.v1.1 MD10G1217900.v1.1
prunus_persica	Prupe.4G126200_v2.0.a1 Prupe.4G126200_v2.0.a1
pyrus_communis	pycom05g21590 pycom10g18370
rosa_chinensis	RchiOBHm_Chr5g0023161
rosa_laevigata	RLG00000032704
rosa_multiflora	Rmu_sc0007300.1_g000015
rosa_roxburghii	Rroxscaffold_1G00056180
rosa_rugosa	Rorug05G0077700 Rorug05G0077700 Rorug05G0077700
rosa_samantha	Rh5AG163800 Rh5BG163100 Rh5CG178100 Rh5DG164500
rosa_wichuraiana	Rw5G014780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	518, 596
AciI	CCGC	2 cut(s)	57, 72
AcoI	YGGCCR	1 cut(s)	640
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	1 cut(s)	170
AfiI	CCNNNNNNNGG	2 cut(s)	419, 488
AgsI	TTSAA	4 cut(s)	25, 203, 497, 650
AjnI	CCWGG	1 cut(s)	642
AluBI	AGCT	2 cut(s)	137, 462
AluI	AGCT	2 cut(s)	137, 462
Alw26I	GTCTC	1 cut(s)	390
AoxI	GGCC	2 cut(s)	548, 640
ApeKI	GCWGC	5 cut(s)	60, 63, 75, 137, 578
AspS9I	GGNCC	2 cut(s)	548, 563
AsuHPI	GGTGA	3 cut(s)	140, 440, 471
AsuII	TTCGAA	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	563
BalI	TGGCCA	1 cut(s)	642
BarI	GAAGNNNNNNTAC	2 cut(s)	152, 184
BbsI	GAAGAC	1 cut(s)	405
BbvI	GCAGC	5 cut(s)	72, 75, 87, 124, 565
BccI	CCATC	1 cut(s)	632
BceAI	ACGGC	1 cut(s)	108
BciT130I	CCWGG	1 cut(s)	644
BclI	TGATCA	2 cut(s)	445, 472
BcoDI	GTCTC	1 cut(s)	390
BfaI	CTAG	1 cut(s)	655
BfuAI	ACCTGC	2 cut(s)	518, 596
BisI	GCNGC	7 cut(s)	58, 61, 64, 73, 76, 138, 579
BlsI	GCNGC	7 cut(s)	59, 62, 65, 74, 77, 139, 580
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	644
Bme18I	GGWCC	1 cut(s)	563
BmgT120I	GGNCC	2 cut(s)	548, 563
BmrFI	CCNGG	1 cut(s)	644
BmsI	GCATC	3 cut(s)	205, 325, 421
BpiI	GAAGAC	1 cut(s)	405
Bpu14I	TTCGAA	1 cut(s)	107
BsaHI	GRCGYC	1 cut(s)	95
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bsc4I	CCNNNNNNNGG	2 cut(s)	419, 488
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	123
Bse3DI	GCAATG	3 cut(s)	286, 588, 630
BseBI	CCWGG	1 cut(s)	644
BseGI	GGATG	1 cut(s)	194
BseLI	CCNNNNNNNGG	2 cut(s)	419, 488
BseMI	GCAATG	3 cut(s)	286, 588, 630
BseNI	ACTGG	1 cut(s)	123
BseRI	GAGGAG	1 cut(s)	43
BseXI	GCAGC	5 cut(s)	72, 75, 87, 124, 565
BsgI	GTGCAG	2 cut(s)	123, 624
BshFI	GGCC	2 cut(s)	550, 642
BsiSI	CCGG	1 cut(s)	45
BslI	CCNNNNNNNGG	2 cut(s)	419, 488
BsmAI	GTCTC	1 cut(s)	390
BsnI	GGCC	2 cut(s)	550, 642
Bsp119I	TTCGAA	1 cut(s)	107
Bsp143I	GATC	2 cut(s)	445, 472
BspACI	CCGC	2 cut(s)	57, 72
BspANI	GGCC	2 cut(s)	550, 642
BspHI	TCATGA	1 cut(s)	442
BspMI	ACCTGC	2 cut(s)	518, 596
BspT104I	TTCGAA	1 cut(s)	107
BsrDI	GCAATG	3 cut(s)	286, 588, 630
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	123
BssAI	RCCGGY	1 cut(s)	44
BssMI	GATC	2 cut(s)	445, 472
BssNI	GRCGYC	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	644
Bst4CI	ACNGT	1 cut(s)	148
BstACI	GRCGYC	1 cut(s)	95
BstBI	TTCGAA	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	194
BstKTI	GATC	2 cut(s)	448, 475
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	2 cut(s)	445, 472
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 63, 69, 72
BstNI	CCWGG	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	642
BstV1I	GCAGC	5 cut(s)	72, 75, 87, 124, 565
BstV2I	GAAGAC	1 cut(s)	405
BsuRI	GGCC	2 cut(s)	550, 642
BtsCI	GGATG	1 cut(s)	194
BtsIMutI	CAGTG	2 cut(s)	130, 468
BveI	ACCTGC	2 cut(s)	518, 596
CciI	TCATGA	1 cut(s)	442
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	548, 563
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	3 cut(s)	443, 488, 617
CviJI	RGCY	8 cut(s)	137, 318, 359, 423, 462, 550, 578, 642
CviKI_1	RGCY	8 cut(s)	137, 318, 359, 423, 462, 550, 578, 642
CviQI	GTAC	1 cut(s)	169
DpnI	GATC	2 cut(s)	447, 474
DpnII	GATC	2 cut(s)	445, 472
EaeI	YGGCCR	1 cut(s)	640
Eco47I	GGWCC	1 cut(s)	563
EcoRII	CCWGG	1 cut(s)	642
EcoT22I	ATGCAT	1 cut(s)	220
FaeI	CATG	3 cut(s)	446, 491, 620
FatI	CATG	3 cut(s)	442, 487, 616
FbaI	TGATCA	2 cut(s)	445, 472
Fnu4HI	GCNGC	7 cut(s)	58, 61, 64, 73, 76, 138, 579
FokI	GGATG	1 cut(s)	181
Fsp4HI	GCNGC	7 cut(s)	58, 61, 64, 73, 76, 138, 579
FspBI	CTAG	1 cut(s)	655
GluI	GCNGC	7 cut(s)	58, 61, 64, 73, 76, 138, 579
HaeIII	GGCC	2 cut(s)	550, 642
HapII	CCGG	1 cut(s)	45
HgaI	GACGC	1 cut(s)	84
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	3 cut(s)	446, 491, 620
HinfI	GANTC	2 cut(s)	239, 261
HpaII	CCGG	1 cut(s)	45
HphI	GGTGA	3 cut(s)	140, 440, 471
Hpy188I	TCNGA	1 cut(s)	374
Hpy188III	TCNNGA	4 cut(s)	25, 182, 443, 449
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	224
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	6 cut(s)	140, 218, 338, 581, 605, 635
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 63, 69, 72
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	3 cut(s)	446, 491, 620
Ksp22I	TGATCA	2 cut(s)	445, 472
Kzo9I	GATC	2 cut(s)	445, 472
Lsp1109I	GCAGC	5 cut(s)	72, 75, 87, 124, 565
LweI	GCATC	3 cut(s)	205, 325, 421
MaeI	CTAG	1 cut(s)	655
MaeIII	GTNAC	2 cut(s)	148, 208
MalI	GATC	2 cut(s)	447, 474
MboI	GATC	2 cut(s)	445, 472
MboII	GAAGA	5 cut(s)	13, 121, 169, 410, 509
MlsI	TGGCCA	1 cut(s)	642
MluCI	AATT	2 cut(s)	408, 570
MluNI	TGGCCA	1 cut(s)	642
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	3 cut(s)	21, 445, 568
Mox20I	TGGCCA	1 cut(s)	642
Mph1103I	ATGCAT	1 cut(s)	220
MscI	TGGCCA	1 cut(s)	642
MseI	TTAA	2 cut(s)	306, 407
Msp20I	TGGCCA	1 cut(s)	642
MspA1I	CMGCKG	1 cut(s)	57
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	644
MvaI	CCWGG	1 cut(s)	644
MwoI	GCNNNNNNNGC	4 cut(s)	54, 63, 69, 72
NdeII	GATC	2 cut(s)	445, 472
NlaIII	CATG	3 cut(s)	446, 491, 620
NsiI	ATGCAT	1 cut(s)	220
NspV	TTCGAA	1 cut(s)	107
PagI	TCATGA	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	261
PkrI	GCNGC	7 cut(s)	59, 62, 65, 74, 77, 139, 580
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	642
PspGI	CCWGG	1 cut(s)	642
PspPI	GGNCC	2 cut(s)	548, 563
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SaqAI	TTAA	2 cut(s)	306, 407
SatI	GCNGC	7 cut(s)	58, 61, 64, 73, 76, 138, 579
Sau3AI	GATC	2 cut(s)	445, 472
Sau96I	GGNCC	2 cut(s)	548, 563
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	644
SetI	ASST	9 cut(s)	139, 210, 343, 456, 464, 512, 568, 610, 648
SfaNI	GCATC	3 cut(s)	205, 325, 421
SfuI	TTCGAA	1 cut(s)	107
SinI	GGWCC	1 cut(s)	563
Sse9I	AATT	2 cut(s)	408, 570
SsiI	CCGC	2 cut(s)	57, 72
SspMI	CTAG	1 cut(s)	655
StyD4I	CCNGG	1 cut(s)	642
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	3 cut(s)	107, 264, 313
TasI	AATT	2 cut(s)	408, 570
TatI	WGTACW	1 cut(s)	168
TauI	GCSGC	2 cut(s)	60, 75
TfiI	GAWTC	1 cut(s)	261
Tru1I	TTAA	2 cut(s)	306, 407
Tru9I	TTAA	2 cut(s)	306, 407
TscAI	CASTG	2 cut(s)	130, 475
TseI	GCWGC	5 cut(s)	60, 63, 75, 137, 578
TspDTI	ATGAA	2 cut(s)	297, 411
TspRI	CASTG	2 cut(s)	130, 475
VpaK11BI	GGWCC	1 cut(s)	563
XspI	CTAG	1 cut(s)	655
ZrmI	AGTACT	1 cut(s)	170
Zsp2I	ATGCAT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.