Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008572

Physical Location & Seq

Genomic Coordinates Forward (+)

6927858 .. 6933209

Gene Structure 5352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G126200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGGCAGCGTCATGTCAATTTTCAGGAAGAAGCAGAACAGCCGTGGAATTCCAAGAACCAGCTCTGGTGGGACCAGCAGCAACCCTAGCATAACTGCCAGAACGGCGTCGTATGGGTCTAGCATGTTCAGGAAACCCAGCATGAGTGAAACCAGTAGCAGCAAACCAGACCAGGGTACAGAGAAGAAGCAGAAGTACGCTTATATCCCTGATAACTTTTCAACCCTGGAACAGGTGACAGATGCCTTGAGAAAAGAAGGTCTAGAGTCATCTAATCTGATTGTTGGAATTGATTTTACAAAAAGCAATGAATGGACAGGCAAAGTTTCATTCAACAACCGGAGCCTGCATGCCATTGGAAATGAACCTAATCCATATGAAAAGGCTATCTCCGTAGTAGGAACAACTTTGGCTCCATTTGATGAAGACAACTTAATTCCTTGTTTTGGCTTTGGTGATGCTACCACTCATGATCAAGAGGTGTTTAGCTTTCACACTGATCATTCACCCTGTCATGGTTTTGAAGAAGTTTTGGCCTGCTACAAAAGAATAGTTCCAAGTTTGCGACTATCAGGGCCAACTTCTTATGGACCTGTAATTGAGGCTGCAATGGATATTGTGGAGAAAAGTGGTGGCCAATACCATGTATTAGTTATCATTGCAGATGGCCAGGTCACAAGAAGTGTCGATACTAGCGACAATGAATTGAGTCCGCAGGAGGAGAAGACAATCAGATCAATTGCAGATGCAAGTTTCTATCCACTCTCTATTGTTCTTGTTGGAGTTGGTGATGGTCCCTGGGAAGACATGAGGAAATTTGATGACAAACTCCCTGCGCGCGAATTTGATAATTTTCAGTTTGTAAACTTTACTGAAATTATGTCTAAACGTTCAACTCCTTCTGAGAAAGAAGCTGCTTTTGCTCTTGCTGCCCTCATGGAAATCCCAATCCAGTATAAGGCAGCTGTTGAACTTGGTATACTTGGACGTACGACAGGGAAAGGAAAGAAAATTGTTCCACGCCCTCCACCAGTTCCTTACACTCATCGTGCACCGCCAACTCGTGAACCAAGTGGTCTTTCAGCAGCCGTGGGGGATGACCGAAGCGAGATGGCCTGCCCAGTCTGTCTGACTAACAATAAGGACCTAGCCTTTGGCTGTGGACACATGTCTTGCAGAGATTGTGGACCAAGATTGTCCAACTGTCCAATATGCCGCCAGCCAATCCGCAGCCGTCTTAGGGTTTTTACCGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009308 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009690 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009850 GO:0009867 GO:0009987 GO:0010033 GO:0010817 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023052 GO:0032446 GO:0032870 GO:0034754 GO:0036211 GO:0042221 GO:0042445 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0065008 GO:0070647 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0071944 GO:0080134 GO:0080148 GO:0098542 GO:0140096 GO:1901564 GO:1901700 GO:1901701 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Copine zf-C3HC4_3

Protein Analysis

419

Amino Acids

45.72

Weight (kDa)

6.72

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79380
fragaria_vesca	FvH4_3g13940 FvH4_3g13940 FvH4_3g13940 FvH4_3g13940
malus_domestica	MD05G1239600.v1.1 MD10G1217900.v1.1
prunus_persica	Prupe.4G126200_v2.0.a1 Prupe.4G126200_v2.0.a1
pyrus_communis	pycom05g21590 pycom10g18370
rosa_chinensis	RchiOBHm_Chr5g0023161
rosa_laevigata	RLG00000032704
rosa_multiflora	Rmu_sc0007300.1_g000015
rosa_roxburghii	Rroxscaffold_1G00056180
rosa_rugosa	Rorug05G0077700 Rorug05G0077700 Rorug05G0077700
rosa_samantha	Rh5AG163800 Rh5BG163100 Rh5CG178100 Rh5DG164500
rosa_wichuraiana	Rw5G014780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	979
AccII	CGCG	2 cut(s)	838, 840
AciI	CCGC	4 cut(s)	713, 1055, 1216, 1228
AclI	AACGTT	1 cut(s)	889
AcoI	YGGCCR	2 cut(s)	634, 667
AcsI	RAATTY	3 cut(s)	48, 815, 842
AcyI	GRCGYC	1 cut(s)	107
AfaI	GTAC	3 cut(s)	178, 197, 991
AfiI	CCNNNNNNNGG	6 cut(s)	173, 232, 446, 515, 958, 1240
AflIII	ACRYGT	1 cut(s)	1167
AgsI	TTSAA	5 cut(s)	222, 334, 524, 894, 971
AjnI	CCWGG	4 cut(s)	171, 225, 669, 797
AjuI	GAANNNNNNNTTGG	2 cut(s)	1063, 1095
AluBI	AGCT	4 cut(s)	63, 489, 914, 965
AluI	AGCT	4 cut(s)	63, 489, 914, 965
Alw21I	GWGCWC	1 cut(s)	1054
Alw44I	GTGCAC	1 cut(s)	1050
AoxI	GGCC	5 cut(s)	534, 575, 634, 667, 1113
ApaLI	GTGCAC	1 cut(s)	1050
ApeKI	GCWGC	9 cut(s)	6, 78, 159, 605, 914, 929, 962, 1085, 1230
ApoI	RAATTY	3 cut(s)	48, 815, 842
ArsI	GACNNNNNNTTYG	2 cut(s)	1136, 1168
AspLEI	GCGC	2 cut(s)	838, 840
AspS9I	GGNCC	6 cut(s)	72, 575, 590, 794, 1144, 1187
AsuHPI	GGTGA	4 cut(s)	247, 467, 498, 800
AvaII	GGWCC	5 cut(s)	72, 590, 794, 1144, 1187
BaeGI	GKGCMC	1 cut(s)	1054
BalI	TGGCCA	2 cut(s)	636, 669
BarI	GAAGNNNNNNTAC	4 cut(s)	179, 211, 673, 705
BauI	CACGAG	1 cut(s)	1062
BbsI	GAAGAC	3 cut(s)	432, 731, 810
Bbv12I	GWGCWC	1 cut(s)	1054
BbvI	GCAGC	9 cut(s)	18, 90, 171, 592, 901, 916, 974, 1097, 1242
BccI	CCATC	3 cut(s)	659, 785, 1105
BceAI	ACGGC	4 cut(s)	27, 120, 1073, 1218
BciT130I	CCWGG	4 cut(s)	173, 227, 671, 799
BclI	TGATCA	2 cut(s)	472, 499
BfaI	CTAG	5 cut(s)	87, 120, 263, 693, 1148
BglI	GCCNNNNNGGC	1 cut(s)	104
Bme1390I	CCNGG	4 cut(s)	173, 227, 671, 799
Bme18I	GGWCC	5 cut(s)	72, 590, 794, 1144, 1187
BmgT120I	GGNCC	6 cut(s)	72, 575, 590, 794, 1144, 1187
BmiI	GGNNCC	4 cut(s)	73, 344, 414, 796
BmrFI	CCNGG	4 cut(s)	173, 227, 671, 799
BmrI	ACTGGG	1 cut(s)	1115
BmsI	GCATC	3 cut(s)	232, 448, 736
BmuI	ACTGGG	1 cut(s)	1115
BoxI	GACNNNNGTC	1 cut(s)	1168
BpiI	GAAGAC	3 cut(s)	432, 731, 810
BpuEI	CTTGAG	1 cut(s)	268
BsaHI	GRCGYC	1 cut(s)	107
BsaJI	CCNNGG	6 cut(s)	43, 172, 225, 797, 798, 1089
BsaWI	WCCGGW	2 cut(s)	339, 1250
BsaXI	ACNNNNNCTCC	2 cut(s)	397, 427
Bsc4I	CCNNNNNNNGG	6 cut(s)	173, 232, 446, 515, 958, 1240
Bse1I	ACTGG	4 cut(s)	153, 952, 1031, 1121
Bse3DI	GCAATG	3 cut(s)	313, 615, 657
BseBI	CCWGG	4 cut(s)	173, 227, 671, 799
BseDI	CCNNGG	6 cut(s)	43, 172, 225, 797, 798, 1089
BseGI	GGATG	1 cut(s)	1102
BseLI	CCNNNNNNNGG	6 cut(s)	173, 232, 446, 515, 958, 1240
BseMI	GCAATG	3 cut(s)	313, 615, 657
BseMII	CTCAG	1 cut(s)	894
BseNI	ACTGG	4 cut(s)	153, 952, 1031, 1121
BsePI	GCGCGC	1 cut(s)	836
BseRI	GAGGAG	1 cut(s)	734
BseSI	GKGCMC	1 cut(s)	1054
BseXI	GCAGC	9 cut(s)	18, 90, 171, 592, 901, 916, 974, 1097, 1242
BseYI	CCCAGC	1 cut(s)	137
Bsh1236I	CGCG	2 cut(s)	838, 840
BshFI	GGCC	5 cut(s)	536, 577, 636, 669, 1115
BsiHKAI	GWGCWC	1 cut(s)	1054
BsiSI	CCGG	2 cut(s)	340, 1251
BsiWI	CGTACG	1 cut(s)	989
BslFI	GGGAC	2 cut(s)	85, 780
BslI	CCNNNNNNNGG	6 cut(s)	173, 232, 446, 515, 958, 1240
BsmFI	GGGAC	2 cut(s)	85, 780
BsnI	GGCC	5 cut(s)	536, 577, 636, 669, 1115
Bsp1286I	GDGCHC	1 cut(s)	1054
Bsp143I	GATC	3 cut(s)	472, 499, 734
BspACI	CCGC	4 cut(s)	713, 1055, 1216, 1228
BspANI	GGCC	5 cut(s)	536, 577, 636, 669, 1115
BspCNI	CTCAG	1 cut(s)	895
BspFNI	CGCG	2 cut(s)	838, 840
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	4 cut(s)	73, 344, 414, 796
BsrDI	GCAATG	3 cut(s)	313, 615, 657
BsrI	ACTGG	4 cut(s)	153, 952, 1031, 1121
BssECI	CCNNGG	6 cut(s)	43, 172, 225, 797, 798, 1089
BssHII	GCGCGC	1 cut(s)	836
BssMI	GATC	3 cut(s)	472, 499, 734
BssNAI	GTATAC	1 cut(s)	980
BssNI	GRCGYC	1 cut(s)	107
BssSI	CACGAG	1 cut(s)	1062
Bst1107I	GTATAC	1 cut(s)	980
Bst2BI	CACGAG	1 cut(s)	1062
Bst2UI	CCWGG	4 cut(s)	173, 227, 671, 799
Bst4CI	ACNGT	1 cut(s)	1205
BstACI	GRCGYC	1 cut(s)	107
BstC8I	GCNNGC	6 cut(s)	347, 351, 538, 838, 1117, 1220
BstDEI	CTNAG	2 cut(s)	903, 1238
BstDSI	CCRYGG	2 cut(s)	43, 1089
BstENI	CCTNNNNNAGG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	1102
BstFNI	CGCG	2 cut(s)	838, 840
BstHHI	GCGC	2 cut(s)	838, 840
BstKTI	GATC	3 cut(s)	475, 502, 737
BstMBI	GATC	3 cut(s)	472, 499, 734
BstMWI	GCNNNNNNNGC	4 cut(s)	87, 104, 920, 929
BstNI	CCWGG	4 cut(s)	173, 227, 671, 799
BstNSI	RCATGY	3 cut(s)	127, 353, 1171
BstPAI	GACNNNNGTC	1 cut(s)	1168
BstSCI	CCNGG	4 cut(s)	171, 225, 669, 797
BstSLI	GKGCMC	1 cut(s)	1054
BstUI	CGCG	2 cut(s)	838, 840
BstV1I	GCAGC	9 cut(s)	18, 90, 171, 592, 901, 916, 974, 1097, 1242
BstV2I	GAAGAC	3 cut(s)	432, 731, 810
BstZ17I	GTATAC	1 cut(s)	980
BsuRI	GGCC	5 cut(s)	536, 577, 636, 669, 1115
BtgI	CCRYGG	2 cut(s)	43, 1089
BtsCI	GGATG	1 cut(s)	1102
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	6 cut(s)	347, 351, 538, 838, 1117, 1220
CciI	TCATGA	1 cut(s)	469
CfoI	GCGC	2 cut(s)	838, 840
Cfr13I	GGNCC	6 cut(s)	72, 575, 590, 794, 1144, 1187
CseI	GACGC	1 cut(s)	96
Csp6I	GTAC	3 cut(s)	177, 196, 990
CviQI	GTAC	3 cut(s)	177, 196, 990
DdeI	CTNAG	2 cut(s)	903, 1238
DpnI	GATC	3 cut(s)	474, 501, 736
DpnII	GATC	3 cut(s)	472, 499, 734
EaeI	YGGCCR	2 cut(s)	634, 667
Eco47I	GGWCC	5 cut(s)	72, 590, 794, 1144, 1187
EcoNI	CCTNNNNNAGG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	1144
EcoRI	GAATTC	1 cut(s)	48
EcoRII	CCWGG	4 cut(s)	171, 225, 669, 797
FaqI	GGGAC	2 cut(s)	85, 780
FauNDI	CATATG	1 cut(s)	376
FbaI	TGATCA	2 cut(s)	472, 499
FblI	GTMKAC	1 cut(s)	979
FokI	GGATG	1 cut(s)	1109
FspBI	CTAG	5 cut(s)	87, 120, 263, 693, 1148
GlaI	GCGC	2 cut(s)	837, 839
GsaI	CCCAGC	1 cut(s)	141
HaeIII	GGCC	5 cut(s)	536, 577, 636, 669, 1115
HapII	CCGG	2 cut(s)	340, 1251
HgaI	GACGC	1 cut(s)	96
HhaI	GCGC	2 cut(s)	838, 840
Hin1I	GRCGYC	1 cut(s)	107
Hin6I	GCGC	2 cut(s)	836, 838
HinP1I	GCGC	2 cut(s)	836, 838
HinfI	GANTC	2 cut(s)	266, 709
HpaII	CCGG	2 cut(s)	340, 1251
HphI	GGTGA	4 cut(s)	247, 467, 498, 800
Hpy166II	GTNNAC	6 cut(s)	865, 980, 1052, 1067, 1163, 1187
Hpy188I	TCNGA	4 cut(s)	279, 734, 904, 1131
Hpy188III	TCNNGA	6 cut(s)	25, 130, 263, 470, 476, 1064
Hpy8I	GTNNAC	6 cut(s)	865, 980, 1052, 1067, 1163, 1187
Hpy99I	CGWCG	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	251, 909
HpyCH4III	ACNGT	1 cut(s)	1205
HpyCH4IV	ACGT	2 cut(s)	889, 988
HpyCH4V	TGCA	7 cut(s)	349, 608, 662, 743, 749, 1052, 1176
HpyF10VI	GCNNNNNNNGC	4 cut(s)	87, 104, 920, 929
HpyF3I	CTNAG	2 cut(s)	903, 1238
HpySE526I	ACGT	2 cut(s)	889, 988
Hsp92I	GRCGYC	1 cut(s)	107
HspAI	GCGC	2 cut(s)	836, 838
Ksp22I	TGATCA	2 cut(s)	472, 499
Kzo9I	GATC	3 cut(s)	472, 499, 734
LmnI	GCTCC	2 cut(s)	342, 418
Lsp1109I	GCAGC	9 cut(s)	18, 90, 171, 592, 901, 916, 974, 1097, 1242
LweI	GCATC	3 cut(s)	232, 448, 736
MaeI	CTAG	5 cut(s)	87, 120, 263, 693, 1148
MaeII	ACGT	2 cut(s)	889, 988
MaeIII	GTNAC	2 cut(s)	235, 673
MalI	GATC	3 cut(s)	474, 501, 736
MboI	GATC	3 cut(s)	472, 499, 734
MboII	GAAGA	6 cut(s)	40, 196, 437, 536, 736, 815
MfeI	CAATTG	1 cut(s)	738
MhlI	GDGCHC	1 cut(s)	1054
MlsI	TGGCCA	2 cut(s)	636, 669
MluNI	TGGCCA	2 cut(s)	636, 669
MlyI	GAGTC	2 cut(s)	275, 718
MmeI	TCCRAC	3 cut(s)	265, 760, 1224
MnlI	CCTC	6 cut(s)	472, 595, 712, 804, 944, 1035
Mox20I	TGGCCA	2 cut(s)	636, 669
MscI	TGGCCA	2 cut(s)	636, 669
MseI	TTAA	1 cut(s)	434
Msp20I	TGGCCA	2 cut(s)	636, 669
MspA1I	CMGCKG	1 cut(s)	965
MspI	CCGG	2 cut(s)	340, 1251
MspR9I	CCNGG	4 cut(s)	173, 227, 671, 799
MunI	CAATTG	1 cut(s)	738
MvaI	CCWGG	4 cut(s)	173, 227, 671, 799
MvnI	CGCG	2 cut(s)	838, 840
MwoI	GCNNNNNNNGC	4 cut(s)	87, 104, 920, 929
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	3 cut(s)	472, 499, 734
NlaIV	GGNNCC	4 cut(s)	73, 344, 414, 796
NmuCI	GTSAC	2 cut(s)	235, 673
NspI	RCATGY	3 cut(s)	127, 353, 1171
PaeI	GCATGC	1 cut(s)	353
PagI	TCATGA	1 cut(s)	469
PasI	CCCWGGG	1 cut(s)	798
PauI	GCGCGC	1 cut(s)	836
PciI	ACATGT	1 cut(s)	1167
PcsI	WCGNNNNNNNCGW	1 cut(s)	693
Pfl23II	CGTACG	1 cut(s)	989
PleI	GAGTC	2 cut(s)	274, 717
PpsI	GAGTC	2 cut(s)	274, 717
PpuMI	RGGWCCY	1 cut(s)	1144
PscI	ACATGT	1 cut(s)	1167
PshAI	GACNNNNGTC	1 cut(s)	1168
Psp1406I	AACGTT	1 cut(s)	889
Psp5II	RGGWCCY	1 cut(s)	1144
Psp6I	CCWGG	4 cut(s)	171, 225, 669, 797
PspFI	CCCAGC	1 cut(s)	137
PspGI	CCWGG	4 cut(s)	171, 225, 669, 797
PspLI	CGTACG	1 cut(s)	989
PspN4I	GGNNCC	4 cut(s)	73, 344, 414, 796
PspPI	GGNCC	6 cut(s)	72, 575, 590, 794, 1144, 1187
PspPPI	RGGWCCY	1 cut(s)	1144
PsrI	GAACNNNNNNTAC	2 cut(s)	963, 995
PteI	GCGCGC	1 cut(s)	836
PvuII	CAGCTG	1 cut(s)	965
RsaI	GTAC	3 cut(s)	178, 197, 991
RsaNI	GTAC	3 cut(s)	177, 196, 990
SaqAI	TTAA	1 cut(s)	434
Sau3AI	GATC	3 cut(s)	472, 499, 734
Sau96I	GGNCC	6 cut(s)	72, 575, 590, 794, 1144, 1187
SchI	GAGTC	2 cut(s)	275, 718
ScrFI	CCNGG	4 cut(s)	173, 227, 671, 799
SduI	GDGCHC	1 cut(s)	1054
SfaNI	GCATC	3 cut(s)	232, 448, 736
SinI	GGWCC	5 cut(s)	72, 590, 794, 1144, 1187
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
SphI	GCATGC	1 cut(s)	353
SsiI	CCGC	4 cut(s)	713, 1055, 1216, 1228
SspMI	CTAG	5 cut(s)	87, 120, 263, 693, 1148
StyD4I	CCNGG	4 cut(s)	171, 225, 669, 797
TaaI	ACNGT	1 cut(s)	1205
TaiI	ACGT	2 cut(s)	892, 991
TaqI	TCGA	1 cut(s)	687
TaqII	GACCGA	1 cut(s)	1116
TauI	GCSGC	1 cut(s)	1218
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	2 cut(s)	235, 673
TseI	GCWGC	9 cut(s)	6, 78, 159, 605, 914, 929, 962, 1085, 1230
Tsp45I	GTSAC	2 cut(s)	235, 673
TspDTI	ATGAA	6 cut(s)	318, 324, 378, 393, 438, 717
TspGWI	ACGGA	1 cut(s)	382
TspRI	CASTG	1 cut(s)	502
VneI	GTGCAC	1 cut(s)	1050
VpaK11BI	GGWCC	5 cut(s)	72, 590, 794, 1144, 1187
XagI	CCTNNNNNAGG	1 cut(s)	230
XapI	RAATTY	3 cut(s)	48, 815, 842
XbaI	TCTAGA	1 cut(s)	262
XceI	RCATGY	3 cut(s)	127, 353, 1171
XmiI	GTMKAC	1 cut(s)	979
XspI	CTAG	5 cut(s)	87, 120, 263, 693, 1148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.