AT1G79960

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0017171
Physical Location & Seq
Reverse (-)
30079665 .. 30080552
888 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79960.1

Sequence Viewer

Length: 885 bp
ATGCCAAACCCATTGCAGAAATCGCTGCATGGTTACCTGTCAAAGATCAAAAAAGAGACAGGGAAGCTGCAACTGTCTTCCTCACATTCATTCTCATCCTCAAAGAATTGGGTGCTTGGTAAGCATCCCAAGAAGCTCTCCTTCTCCTTCAAGCACAGACGACGCAGCAGCAAGACCAGATTCAGCAAAGAAGAACCCGTTTACCACCAGGACTCTGCTCACGCCGCCACCTTGTCCGACATTGATCGTTTTCTTGAGGAAAACTTCAAATCCCTCTGCATCAGAGACGACCAGGAGGATGATCAGCATCAAGCCCGGGTGACCAAAAACAAGGAGAAAAGGGAGTCATCATCAGACGACAGTGATGATGATGATGATGACGACGACTATCGTCACAGATTCGAGAGGACATGGGGACATGCCGTCTACGACTCCCCGAAACAGCCCCCGGATTTGCTGAGAACAGAGAGGCTATCTCCTCCGCCTGGATCTTCGGAGGGCAGGCCTAGCATGGAAACAACGTCAACATCGTCGGAGAGGCAATCGAGATCCACCTTGGTGCTGCCGGAGAACTGCATCGCGGTGTTAAGATACACGGATGAGCCGCAAGAGGATTTCAGGCAGTCCATGGTGGAGATGATGGAGTCCAAGTTAGGGATGCGGGAAAGCGAAGTGGATTGGGACTTGATGGAAGAGCTACTCTTCTGCTATCTGGATCTCAACGACAAGAAGTCACACAAGTTCATACTAAGCGCTTTCGTCGATCTCATCATTGCTCTTCGTGAGAAGGAGAAGAGAATCACCAGGAAAGGTCATGTGAGGTCGCTCAGTACTCGTGCCGCCAGGGACAGGCTTAGGAAGAGGATGATCATGAGTGACAACTAA

Protein Analysis

294

Amino Acids

34.36

Weight (kDa)

7.76

Isoelectric Point (pI)

57.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 200 - 260 1.6e-21 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017171)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79960
fragaria_vesca FvH4_6g31210
malus_domestica MD17G1194900.v1.1
prunus_persica Prupe.3G070900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0137881
rosa_laevigata RLG00000019687
rosa_roxburghii Rroxscaffold_2G00106690
rosa_rugosa Rorug02G0347700
rosa_samantha Rh2AG394000 Rh2BG401400 Rh2CG380700 Rh2DG416200
rosa_wichuraiana Rw2G032250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 426
AccII CGCG 1 cut(s) 581
AciI CCGC 6 cut(s) 225, 482, 581, 605, 661, 840
AclWI GGATC 3 cut(s) 496, 543, 723
AfaI GTAC 1 cut(s) 832
AfeI AGCGCT 1 cut(s) 754
AfiI CCNNNNNNNGG 3 cut(s) 485, 654, 849
AgsI TTSAA 2 cut(s) 151, 268
AhdI GACNNNNNGTC 2 cut(s) 422, 730
AjnI CCWGG 5 cut(s) 207, 291, 484, 803, 842
AleI CACNNNNGTG 1 cut(s) 557
AluBI AGCT 3 cut(s) 67, 136, 697
AluI AGCT 3 cut(s) 67, 136, 697
Alw26I GTCTC 2 cut(s) 50, 279
AlwI GGATC 3 cut(s) 496, 543, 723
Ama87I CYCGRG 1 cut(s) 315
Aor51HI AGCGCT 1 cut(s) 754
AoxI GGCC 1 cut(s) 503
ApeKI GCWGC 5 cut(s) 25, 67, 165, 168, 562
AspLEI GCGC 1 cut(s) 755
AsuC2I CCSGG 3 cut(s) 316, 317, 449
AsuHPI GGTGA 2 cut(s) 331, 793
AvaI CYCGRG 1 cut(s) 315
BauI CACGAG 1 cut(s) 834
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 5 cut(s) 12, 54, 177, 180, 549
BccI CCATC 2 cut(s) 634, 682
BceAI ACGGC 1 cut(s) 407
BciT130I CCWGG 5 cut(s) 209, 293, 486, 805, 844
BclI TGATCA 2 cut(s) 301, 867
BcnI CCSGG 3 cut(s) 316, 317, 449
BcoDI GTCTC 2 cut(s) 50, 279
BfaI CTAG 1 cut(s) 507
BfoI RGCGCY 1 cut(s) 756
BisI GCNGC 8 cut(s) 26, 68, 166, 169, 225, 563, 605, 840
BlsI GCNGC 8 cut(s) 27, 69, 167, 170, 226, 564, 606, 841
BmcAI AGTACT 1 cut(s) 832
Bme1390I CCNGG 8 cut(s) 209, 293, 316, 317, 449, 486, 805, 844
BmeRI GACNNNNNGTC 2 cut(s) 422, 730
BmeT110I CYCGRG 1 cut(s) 315
BmrFI CCNGG 8 cut(s) 209, 293, 316, 317, 449, 486, 805, 844
BmsI GCATC 5 cut(s) 133, 288, 316, 585, 648
BoxI GACNNNNGTC 1 cut(s) 390
BpiI GAAGAC 1 cut(s) 69
BplI GAGNNNNNCTC 2 cut(s) 460, 492
Bpu10I CCTNAGC 1 cut(s) 854
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 3 cut(s) 316, 317, 449
BsaBI GATNNNNATC 1 cut(s) 306
BsaJI CCNNGG 5 cut(s) 315, 447, 555, 627, 843
BsaXI ACNNNNNCTCC 2 cut(s) 635, 665
Bsc4I CCNNNNNNNGG 3 cut(s) 485, 654, 849
Bse3DI GCAATG 2 cut(s) 11, 771
Bse8I GATNNNNATC 1 cut(s) 306
BseBI CCWGG 5 cut(s) 209, 293, 486, 805, 844
BseDI CCNNGG 5 cut(s) 315, 447, 555, 627, 843
BseGI GGATG 6 cut(s) 95, 124, 304, 604, 663, 870
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 3 cut(s) 485, 654, 849
BseMI GCAATG 2 cut(s) 11, 771
BseMII CTCAG 2 cut(s) 449, 841
BseRI GAGGAG 1 cut(s) 468
BseXI GCAGC 5 cut(s) 12, 54, 177, 180, 549
Bsh1236I CGCG 1 cut(s) 581
BshFI GGCC 1 cut(s) 505
BsiHKCI CYCGRG 1 cut(s) 315
BsiSI CCGG 3 cut(s) 316, 449, 566
BslFI GGGAC 3 cut(s) 429, 695, 860
BslI CCNNNNNNNGG 3 cut(s) 485, 654, 849
BsmAI GTCTC 2 cut(s) 50, 279
BsmBI CGTCTC 1 cut(s) 279
BsmFI GGGAC 3 cut(s) 429, 695, 860
BsnI GGCC 1 cut(s) 505
BsoBI CYCGRG 1 cut(s) 315
Bsp143I GATC 8 cut(s) 45, 244, 301, 488, 548, 715, 763, 867
Bsp19I CCATGG 1 cut(s) 627
BspACI CCGC 6 cut(s) 225, 482, 581, 605, 661, 840
BspANI GGCC 1 cut(s) 505
BspCNI CTCAG 2 cut(s) 450, 840
BspFNI CGCG 1 cut(s) 581
BspHI TCATGA 1 cut(s) 870
BspPI GGATC 3 cut(s) 496, 543, 723
BspQI GCTCTTC 2 cut(s) 687, 783
BsrDI GCAATG 2 cut(s) 11, 771
BssECI CCNNGG 5 cut(s) 315, 447, 555, 627, 843
BssMI GATC 8 cut(s) 45, 244, 301, 488, 548, 715, 763, 867
BssSI CACGAG 1 cut(s) 834
BssT1I CCWWGG 2 cut(s) 555, 627
Bst2BI CACGAG 1 cut(s) 834
Bst2UI CCWGG 5 cut(s) 209, 293, 486, 805, 844
Bst4CI ACNGT 2 cut(s) 75, 362
Bst6I CTCTTC 5 cut(s) 687, 707, 783, 788, 854
BstC8I GCNNGC 1 cut(s) 503
BstDEI CTNAG 4 cut(s) 458, 749, 827, 854
BstDSI CCRYGG 1 cut(s) 627
BstEII GGTNACC 2 cut(s) 32, 319
BstF5I GGATG 6 cut(s) 95, 124, 304, 604, 663, 870
BstFNI CGCG 1 cut(s) 581
BstH2I RGCGCY 1 cut(s) 756
BstHHI GCGC 1 cut(s) 755
BstKTI GATC 8 cut(s) 48, 247, 304, 491, 551, 718, 766, 870
BstMAI GTCTC 2 cut(s) 50, 279
BstMBI GATC 8 cut(s) 45, 244, 301, 488, 548, 715, 763, 867
BstMWI GCNNNNNNNGC 4 cut(s) 22, 121, 224, 507
BstNI CCWGG 5 cut(s) 209, 293, 486, 805, 844
BstNSI RCATGY 1 cut(s) 422
BstPAI GACNNNNGTC 1 cut(s) 390
BstPI GGTNACC 2 cut(s) 32, 319
BstSCI CCNGG 8 cut(s) 207, 291, 314, 315, 447, 484, 803, 842
BstUI CGCG 1 cut(s) 581
BstV1I GCAGC 5 cut(s) 12, 54, 177, 180, 549
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 3 cut(s) 488, 548, 715
BstYI RGATCY 3 cut(s) 488, 548, 715
BsuRI GGCC 1 cut(s) 505
BtgI CCRYGG 1 cut(s) 627
BtgZI GCGATG 1 cut(s) 562
BtsCI GGATG 6 cut(s) 95, 124, 304, 604, 663, 870
BtsIMutI CAGTG 1 cut(s) 367
Cac8I GCNNGC 1 cut(s) 503
CciI TCATGA 1 cut(s) 870
CfoI GCGC 1 cut(s) 755
Cfr9I CCCGGG 1 cut(s) 315
CseI GACGC 1 cut(s) 171
Csp6I GTAC 1 cut(s) 831
CviAII CATG 7 cut(s) 29, 411, 419, 511, 628, 815, 871
CviJI RGCY 9 cut(s) 67, 136, 314, 445, 472, 505, 604, 697, 853
CviKI_1 RGCY 9 cut(s) 67, 136, 314, 445, 472, 505, 604, 697, 853
CviQI GTAC 1 cut(s) 831
DdeI CTNAG 4 cut(s) 458, 749, 827, 854
DpnI GATC 8 cut(s) 47, 246, 303, 490, 550, 717, 765, 869
DpnII GATC 8 cut(s) 45, 244, 301, 488, 548, 715, 763, 867
DriI GACNNNNNGTC 2 cut(s) 422, 730
Eam1104I CTCTTC 5 cut(s) 687, 707, 783, 788, 854
Eam1105I GACNNNNNGTC 2 cut(s) 422, 730
EarI CTCTTC 5 cut(s) 687, 707, 783, 788, 854
EciI GGCGGA 1 cut(s) 471
Eco130I CCWWGG 2 cut(s) 555, 627
Eco147I AGGCCT 1 cut(s) 505
Eco47III AGCGCT 1 cut(s) 754
Eco88I CYCGRG 1 cut(s) 315
Eco91I GGTNACC 2 cut(s) 32, 319
EcoO65I GGTNACC 2 cut(s) 32, 319
EcoRII CCWGG 5 cut(s) 207, 291, 484, 803, 842
EcoT14I CCWWGG 2 cut(s) 555, 627
ErhI CCWWGG 2 cut(s) 555, 627
Esp3I CGTCTC 1 cut(s) 279
FaeI CATG 7 cut(s) 32, 414, 422, 514, 631, 818, 874
FaiI YATR 8 cut(s) 30, 412, 420, 512, 629, 746, 816, 872
FalI AAGNNNNNCTT 2 cut(s) 125, 157
FaqI GGGAC 3 cut(s) 429, 695, 860
FatI CATG 7 cut(s) 28, 410, 418, 510, 627, 814, 870
FauI CCCGC 1 cut(s) 654
FbaI TGATCA 2 cut(s) 301, 867
FblI GTMKAC 1 cut(s) 426
Fnu4HI GCNGC 8 cut(s) 26, 68, 166, 169, 225, 563, 605, 840
FokI GGATG 6 cut(s) 82, 111, 311, 611, 670, 877
Fsp4HI GCNGC 8 cut(s) 26, 68, 166, 169, 225, 563, 605, 840
FspBI CTAG 1 cut(s) 507
GlaI GCGC 1 cut(s) 754
GluI GCNGC 8 cut(s) 26, 68, 166, 169, 225, 563, 605, 840
HaeII RGCGCY 1 cut(s) 756
HaeIII GGCC 1 cut(s) 505
HapII CCGG 3 cut(s) 316, 449, 566
HgaI GACGC 1 cut(s) 171
HhaI GCGC 1 cut(s) 755
Hin1II CATG 7 cut(s) 32, 414, 422, 514, 631, 818, 874
Hin6I GCGC 1 cut(s) 753
HinP1I GCGC 1 cut(s) 753
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HinfI GANTC 7 cut(s) 180, 212, 344, 399, 431, 644, 798
HpaII CCGG 3 cut(s) 316, 449, 566
HphI GGTGA 2 cut(s) 331, 793
Hpy166II GTNNAC 3 cut(s) 202, 427, 525
Hpy188I TCNGA 5 cut(s) 238, 284, 355, 496, 535
Hpy188III TCNNGA 6 cut(s) 254, 403, 546, 713, 782, 871
Hpy8I GTNNAC 3 cut(s) 202, 427, 525
Hpy99I CGWCG 4 cut(s) 165, 386, 535, 764
HpyAV CCTTC 3 cut(s) 151, 157, 781
HpyCH4III ACNGT 2 cut(s) 75, 362
HpyCH4IV ACGT 1 cut(s) 521
HpyCH4V TGCA 5 cut(s) 16, 28, 70, 279, 576
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 121, 224, 507
HpyF3I CTNAG 4 cut(s) 458, 749, 827, 854
HpySE526I ACGT 1 cut(s) 521
Hsp92II CATG 7 cut(s) 32, 414, 422, 514, 631, 818, 874
HspAI GCGC 1 cut(s) 753
Ksp22I TGATCA 2 cut(s) 301, 867
Kzo9I GATC 8 cut(s) 45, 244, 301, 488, 548, 715, 763, 867
LguI GCTCTTC 2 cut(s) 687, 783
Lsp1109I GCAGC 5 cut(s) 12, 54, 177, 180, 549
LweI GCATC 5 cut(s) 133, 288, 316, 585, 648
MaeI CTAG 1 cut(s) 507
MaeII ACGT 1 cut(s) 521
MaeIII GTNAC 5 cut(s) 32, 319, 392, 732, 875
MalI GATC 8 cut(s) 47, 246, 303, 490, 550, 717, 765, 869
MboI GATC 8 cut(s) 45, 244, 301, 488, 548, 715, 763, 867
MboII GAAGA 8 cut(s) 69, 203, 483, 694, 704, 770, 805, 871
MflI RGATCY 3 cut(s) 488, 548, 715
MluCI AATT 1 cut(s) 106
MlyI GAGTC 4 cut(s) 206, 353, 425, 653
MmeI TCCRAC 2 cut(s) 261, 513
MseI TTAA 1 cut(s) 587
MslI CAYNNNNRTG 2 cut(s) 557, 581
MspI CCGG 3 cut(s) 316, 449, 566
MspR9I CCNGG 8 cut(s) 209, 293, 316, 317, 449, 486, 805, 844
MvaI CCWGG 5 cut(s) 209, 293, 486, 805, 844
MvnI CGCG 1 cut(s) 581
MwoI GCNNNNNNNGC 4 cut(s) 22, 121, 224, 507
NciI CCSGG 3 cut(s) 316, 317, 449
NcoI CCATGG 1 cut(s) 627
NdeII GATC 8 cut(s) 45, 244, 301, 488, 548, 715, 763, 867
NlaIII CATG 7 cut(s) 32, 414, 422, 514, 631, 818, 874
NmuCI GTSAC 4 cut(s) 319, 392, 732, 875
NspI RCATGY 1 cut(s) 422
OliI CACNNNNGTG 1 cut(s) 557
PagI TCATGA 1 cut(s) 870
PceI AGGCCT 1 cut(s) 505
PciSI GCTCTTC 2 cut(s) 687, 783
PcsI WCGNNNNNNNCGW 1 cut(s) 527
PfeI GAWTC 3 cut(s) 180, 399, 798
PkrI GCNGC 8 cut(s) 27, 69, 167, 170, 226, 564, 606, 841
PleI GAGTC 4 cut(s) 206, 352, 425, 652
PpsI GAGTC 4 cut(s) 206, 352, 425, 652
PshAI GACNNNNGTC 1 cut(s) 390
Psp6I CCWGG 5 cut(s) 207, 291, 484, 803, 842
PspEI GGTNACC 2 cut(s) 32, 319
PspGI CCWGG 5 cut(s) 207, 291, 484, 803, 842
PsuI RGATCY 3 cut(s) 488, 548, 715
RsaI GTAC 1 cut(s) 832
RsaNI GTAC 1 cut(s) 831
RseI CAYNNNNRTG 2 cut(s) 557, 581
SapI GCTCTTC 2 cut(s) 687, 783
SaqAI TTAA 1 cut(s) 587
SatI GCNGC 8 cut(s) 26, 68, 166, 169, 225, 563, 605, 840
Sau3AI GATC 8 cut(s) 45, 244, 301, 488, 548, 715, 763, 867
ScaI AGTACT 1 cut(s) 832
SchI GAGTC 4 cut(s) 206, 353, 425, 653
ScrFI CCNGG 8 cut(s) 209, 293, 316, 317, 449, 486, 805, 844
SetI ASST 9 cut(s) 39, 69, 138, 233, 524, 557, 699, 814, 824
SfaNI GCATC 5 cut(s) 133, 288, 316, 585, 648
SmaI CCCGGG 1 cut(s) 317
SmiMI CAYNNNNRTG 2 cut(s) 557, 581
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 1 cut(s) 106
SseBI AGGCCT 1 cut(s) 505
SsiI CCGC 6 cut(s) 225, 482, 581, 605, 661, 840
SspMI CTAG 1 cut(s) 507
StuI AGGCCT 1 cut(s) 505
StyD4I CCNGG 8 cut(s) 207, 291, 314, 315, 447, 484, 803, 842
StyI CCWWGG 2 cut(s) 555, 627
TaaI ACNGT 2 cut(s) 75, 362
TaiI ACGT 1 cut(s) 524
TaqI TCGA 3 cut(s) 402, 545, 762
TasI AATT 1 cut(s) 106
TatI WGTACW 1 cut(s) 830
TauI GCSGC 3 cut(s) 227, 607, 842
TfiI GAWTC 3 cut(s) 180, 399, 798
Tru1I TTAA 1 cut(s) 587
Tru9I TTAA 1 cut(s) 587
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 4 cut(s) 319, 392, 732, 875
TseI GCWGC 5 cut(s) 25, 67, 165, 168, 562
Tsp45I GTSAC 4 cut(s) 319, 392, 732, 875
TspDTI ATGAA 2 cut(s) 78, 733
TspGWI ACGGA 1 cut(s) 611
TspMI CCCGGG 1 cut(s) 315
TspRI CASTG 1 cut(s) 367
XceI RCATGY 1 cut(s) 422
XmaI CCCGGG 1 cut(s) 315
XmiI GTMKAC 1 cut(s) 426
XspI CTAG 1 cut(s) 507
ZrmI AGTACT 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.