Rh2CG380700

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0017171
Physical Location & Seq
Reverse (-)
51958707 .. 51960300
1594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG380700.1

Sequence Viewer

Length: 921 bp
ATGCCCAAGAAACTCCAAAAGCGTCTCCAAGATTACCTCACCAAGATTAAGAAACCACCCCCTTCAATCCAATTCCCCTCTAAAAATTGGATGCGAGCCTGTAAACACCCCAAAACCCTATCTTTCGCTATCAACAACGATGAGACTCATGACAAAGATGATGATGCGGCAACGCTCTCAGATATTGATGAGTTTCTCTTCGAGAATTTCAGGTCTCTGTACCCAAGAGACGATCAAGGAGACTCCATCAACGACGACGAAAGAAGAGAAGAGAAAGATCTACATCGTCGTCCTCGTGATGCCCTTCGGCATAAAACCCTACAAATGGAAGAAGGCCGTCCTGGTGATCATGAAAATGAAAGCACAAACGAGCCCTTTTGGGATAAAACTCTACACCTGAAGAAGCGTCGTCCTGATCATCAAGAAACCCAAAACCAAGATGGGTTTCTGTTCGAATCCCCTCGACTGAATATTGATCCACCGGCGGCGGATCTCTGTGGCTCACACAGGTTTTCGGTGTCCCCAGGTCGGCTGTCAAGCTCGGTTCGGACTAGTACAACCACCACGACATCTGAGGACGCAGGATCCAGGTCAATGTCAACACGAACCCTAAACGACTCTGCTATCACATCACATTCTAATAACAACGATCATGTGGCACTTCCCAGTGACTGTATCTCAGTGTTGATGTACTCTCCCAACCCTGGCGACGAGTTTGGAAGATCCATGCATGACATGGTTGAGGCTCGCCTCAGAAACAAGGCAAAGGTCGATTGGAATTTCATGGAAGAGCTTCTGCTTTGTTATCTCAATCTCAACGAGAAGAAGTCCCACAGGTTCATACTGAGTGCTTTCGCGGATTTGGTCGTGGACATGCGTCCGGATTCTGACAGCGTCCCCGAGAGATCACGGAAATTTTGA

Protein Analysis

306

Amino Acids

35.33

Weight (kDa)

6.07

Isoelectric Point (pI)

60.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 232 - 292 2e-19 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017171)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79960
fragaria_vesca FvH4_6g31210
malus_domestica MD17G1194900.v1.1
prunus_persica Prupe.3G070900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0137881
rosa_laevigata RLG00000019687
rosa_roxburghii Rroxscaffold_2G00106690
rosa_rugosa Rorug02G0347700
rosa_samantha Rh2AG394000 Rh2BG401400 Rh2CG380700 Rh2DG416200
rosa_wichuraiana Rw2G032250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 857
AccIII TCCGGA 1 cut(s) 880
AciI CCGC 4 cut(s) 167, 485, 488, 857
AclWI GGATC 5 cut(s) 470, 498, 579, 592, 717
AcsI RAATTY 3 cut(s) 205, 778, 914
AcuI CTGAAG 1 cut(s) 419
AfaI GTAC 3 cut(s) 221, 556, 692
AfiI CCNNNNNNNGG 3 cut(s) 325, 528, 704
AgsI TTSAA 1 cut(s) 66
AhlI ACTAGT 1 cut(s) 551
AjnI CCWGG 4 cut(s) 340, 523, 587, 703
AjuI GAANNNNNNNTTGG 2 cut(s) 429, 461
AluBI AGCT 2 cut(s) 540, 793
AluI AGCT 2 cut(s) 540, 793
Alw26I GTCTC 5 cut(s) 29, 137, 219, 222, 234
AlwI GGATC 5 cut(s) 470, 498, 579, 592, 717
AlwNI CAGNNNCTG 1 cut(s) 672
Ama87I CYCGRG 1 cut(s) 899
Aor13HI TCCGGA 1 cut(s) 880
AoxI GGCC 1 cut(s) 334
ApoI RAATTY 3 cut(s) 205, 778, 914
Asp700I GAANNNNTTC 1 cut(s) 792
AsuHPI GGTGA 2 cut(s) 31, 356
AsuII TTCGAA 1 cut(s) 453
AvaI CYCGRG 1 cut(s) 899
BamHI GGATCC 1 cut(s) 584
BanII GRGCYC 1 cut(s) 375
BauI CACGAG 1 cut(s) 294
BccI CCATC 2 cut(s) 254, 434
BceAI ACGGC 1 cut(s) 321
BciT130I CCWGG 4 cut(s) 342, 525, 589, 705
BclI TGATCA 2 cut(s) 346, 415
BcoDI GTCTC 5 cut(s) 29, 137, 219, 222, 234
BcuI ACTAGT 1 cut(s) 551
BfaI CTAG 1 cut(s) 552
BglII AGATCT 1 cut(s) 277
BisI GCNGC 2 cut(s) 168, 486
BlsI GCNGC 2 cut(s) 169, 487
Bme1390I CCNGG 4 cut(s) 342, 525, 589, 705
BmeT110I CYCGRG 1 cut(s) 899
BmiI GGNNCC 1 cut(s) 586
BmrFI CCNGG 4 cut(s) 342, 525, 589, 705
BmrI ACTGGG 1 cut(s) 660
BmsI GCATC 3 cut(s) 81, 154, 289
BmuI ACTGGG 1 cut(s) 660
BoxI GACNNNNGTC 1 cut(s) 876
Bpu14I TTCGAA 1 cut(s) 453
BsaBI GATNNNNATC 1 cut(s) 282
BsaI GGTCTC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 523, 703
BsaWI WCCGGW 1 cut(s) 880
Bsc4I CCNNNNNNNGG 3 cut(s) 325, 528, 704
Bse118I RCCGGY 1 cut(s) 481
Bse1I ACTGG 1 cut(s) 666
Bse8I GATNNNNATC 1 cut(s) 282
BseAI TCCGGA 1 cut(s) 880
BseBI CCWGG 4 cut(s) 342, 525, 589, 705
BseDI CCNNGG 2 cut(s) 523, 703
BseGI GGATG 1 cut(s) 96
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 3 cut(s) 325, 528, 704
BseMII CTCAG 5 cut(s) 192, 564, 693, 766, 836
BseNI ACTGG 1 cut(s) 666
Bsh1236I CGCG 1 cut(s) 857
BshFI GGCC 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 899
BsiSI CCGG 2 cut(s) 482, 881
BslFI GGGAC 3 cut(s) 505, 814, 881
BslI CCNNNNNNNGG 3 cut(s) 325, 528, 704
BsmAI GTCTC 5 cut(s) 29, 137, 219, 222, 234
BsmBI CGTCTC 2 cut(s) 29, 222
BsmFI GGGAC 3 cut(s) 505, 814, 881
BsnI GGCC 1 cut(s) 336
Bso31I GGTCTC 1 cut(s) 219
BsoBI CYCGRG 1 cut(s) 899
Bsp119I TTCGAA 1 cut(s) 453
Bsp1286I GDGCHC 1 cut(s) 375
Bsp13I TCCGGA 1 cut(s) 880
BspACI CCGC 4 cut(s) 167, 485, 488, 857
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 5 cut(s) 191, 565, 692, 765, 837
BspEI TCCGGA 1 cut(s) 880
BspFNI CGCG 1 cut(s) 857
BspHI TCATGA 2 cut(s) 148, 349
BspLI GGNNCC 1 cut(s) 586
BspPI GGATC 5 cut(s) 470, 498, 579, 592, 717
BspQI GCTCTTC 1 cut(s) 783
BspT104I TTCGAA 1 cut(s) 453
BspTNI GGTCTC 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 481
BsrI ACTGG 1 cut(s) 666
BssAI RCCGGY 1 cut(s) 481
BssECI CCNNGG 2 cut(s) 523, 703
BssSI CACGAG 1 cut(s) 294
Bst2BI CACGAG 1 cut(s) 294
Bst2UI CCWGG 4 cut(s) 342, 525, 589, 705
Bst4CI ACNGT 1 cut(s) 674
Bst6I CTCTTC 4 cut(s) 203, 259, 264, 783
BstBI TTCGAA 1 cut(s) 453
BstC8I GCNNGC 2 cut(s) 96, 748
BstDEI CTNAG 5 cut(s) 178, 573, 679, 752, 845
BstF5I GGATG 1 cut(s) 96
BstFNI CGCG 1 cut(s) 857
BstMAI GTCTC 5 cut(s) 29, 137, 219, 222, 234
BstNI CCWGG 4 cut(s) 342, 525, 589, 705
BstNSI RCATGY 1 cut(s) 877
BstPAI GACNNNNGTC 1 cut(s) 876
BstSCI CCNGG 4 cut(s) 340, 523, 587, 703
BstUI CGCG 1 cut(s) 857
BstX2I RGATCY 4 cut(s) 277, 490, 584, 722
BstYI RGATCY 4 cut(s) 277, 490, 584, 722
BsuRI GGCC 1 cut(s) 336
BtsCI GGATG 1 cut(s) 96
BtsIMutI CAGTG 2 cut(s) 673, 687
Cac8I GCNNGC 2 cut(s) 96, 748
CaiI CAGNNNCTG 1 cut(s) 672
CciI TCATGA 2 cut(s) 148, 349
Cfr10I RCCGGY 1 cut(s) 481
CseI GACGC 5 cut(s) 11, 395, 587, 866, 883
Csp6I GTAC 3 cut(s) 220, 555, 691
CviAII CATG 8 cut(s) 149, 350, 653, 727, 731, 736, 784, 874
CviJI RGCY 8 cut(s) 98, 336, 373, 501, 532, 540, 746, 793
CviKI_1 RGCY 8 cut(s) 98, 336, 373, 501, 532, 540, 746, 793
CviQI GTAC 3 cut(s) 220, 555, 691
DdeI CTNAG 5 cut(s) 178, 573, 679, 752, 845
Eam1104I CTCTTC 4 cut(s) 203, 259, 264, 783
EarI CTCTTC 4 cut(s) 203, 259, 264, 783
EciI GGCGGA 1 cut(s) 503
Eco24I GRGCYC 1 cut(s) 375
Eco31I GGTCTC 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 419
Eco88I CYCGRG 1 cut(s) 899
EcoRII CCWGG 4 cut(s) 340, 523, 587, 703
EcoT22I ATGCAT 1 cut(s) 732
EcoT38I GRGCYC 1 cut(s) 375
Esp3I CGTCTC 2 cut(s) 29, 222
FaeI CATG 8 cut(s) 152, 353, 656, 730, 734, 739, 787, 877
FaqI GGGAC 3 cut(s) 505, 814, 881
FatI CATG 8 cut(s) 148, 349, 652, 726, 730, 735, 783, 873
FbaI TGATCA 2 cut(s) 346, 415
Fnu4HI GCNGC 2 cut(s) 168, 486
FokI GGATG 1 cut(s) 103
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 2 cut(s) 168, 486
FspBI CTAG 1 cut(s) 552
GluI GCNGC 2 cut(s) 168, 486
HaeIII GGCC 1 cut(s) 336
HapII CCGG 2 cut(s) 482, 881
HgaI GACGC 5 cut(s) 11, 395, 587, 866, 883
Hin1II CATG 8 cut(s) 152, 353, 656, 730, 734, 739, 787, 877
HincII GTYRAC 1 cut(s) 600
HindII GTYRAC 1 cut(s) 600
HinfI GANTC 5 cut(s) 145, 242, 455, 617, 884
HpaII CCGG 2 cut(s) 482, 881
HphI GGTGA 2 cut(s) 31, 356
Hpy166II GTNNAC 3 cut(s) 104, 600, 871
Hpy188I TCNGA 5 cut(s) 181, 549, 574, 755, 889
Hpy188III TCNNGA 7 cut(s) 149, 202, 296, 350, 413, 422, 881
Hpy8I GTNNAC 3 cut(s) 104, 600, 871
Hpy99I CGWCG 5 cut(s) 257, 260, 291, 411, 713
HpyAV CCTTC 3 cut(s) 72, 314, 326
HpyCH4III ACNGT 1 cut(s) 674
HpyCH4V TGCA 1 cut(s) 730
HpyF3I CTNAG 5 cut(s) 178, 573, 679, 752, 845
Hsp92II CATG 8 cut(s) 152, 353, 656, 730, 734, 739, 787, 877
Kpn2I TCCGGA 1 cut(s) 880
Ksp22I TGATCA 2 cut(s) 346, 415
LguI GCTCTTC 1 cut(s) 783
LweI GCATC 3 cut(s) 81, 154, 289
MaeI CTAG 1 cut(s) 552
MaeIII GTNAC 1 cut(s) 668
MboII GAAGA 8 cut(s) 190, 276, 281, 341, 412, 732, 800, 835
MflI RGATCY 4 cut(s) 277, 490, 584, 722
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 5 cut(s) 71, 85, 205, 778, 914
MlyI GAGTC 3 cut(s) 139, 236, 611
MnlI CCTC 7 cut(s) 47, 88, 303, 471, 568, 736, 761
Mph1103I ATGCAT 1 cut(s) 732
MroI TCCGGA 1 cut(s) 880
MroXI GAANNNNTTC 1 cut(s) 792
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 354
MspI CCGG 2 cut(s) 482, 881
MspR9I CCNGG 4 cut(s) 342, 525, 589, 705
MvaI CCWGG 4 cut(s) 342, 525, 589, 705
MvnI CGCG 1 cut(s) 857
NlaIII CATG 8 cut(s) 152, 353, 656, 730, 734, 739, 787, 877
NlaIV GGNNCC 1 cut(s) 586
NmuCI GTSAC 1 cut(s) 668
NsiI ATGCAT 1 cut(s) 732
NspI RCATGY 1 cut(s) 877
NspV TTCGAA 1 cut(s) 453
PagI TCATGA 2 cut(s) 148, 349
PciSI GCTCTTC 1 cut(s) 783
PcsI WCGNNNNNNNCGW 1 cut(s) 292
PdmI GAANNNNTTC 1 cut(s) 792
PfeI GAWTC 2 cut(s) 455, 884
PflFI GACNNNGTC 1 cut(s) 893
PkrI GCNGC 2 cut(s) 169, 487
PleI GAGTC 3 cut(s) 139, 236, 611
PpsI GAGTC 3 cut(s) 139, 236, 611
PshAI GACNNNNGTC 1 cut(s) 876
Psp6I CCWGG 4 cut(s) 340, 523, 587, 703
PspGI CCWGG 4 cut(s) 340, 523, 587, 703
PspN4I GGNNCC 1 cut(s) 586
PstNI CAGNNNCTG 1 cut(s) 672
PsuI RGATCY 4 cut(s) 277, 490, 584, 722
PsyI GACNNNGTC 1 cut(s) 893
RsaI GTAC 3 cut(s) 221, 556, 692
RsaNI GTAC 3 cut(s) 220, 555, 691
RseI CAYNNNNRTG 1 cut(s) 354
SapI GCTCTTC 1 cut(s) 783
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 2 cut(s) 168, 486
SchI GAGTC 3 cut(s) 139, 236, 611
ScrFI CCNGG 4 cut(s) 342, 525, 589, 705
SduI GDGCHC 1 cut(s) 375
SfaNI GCATC 3 cut(s) 81, 154, 289
SfuI TTCGAA 1 cut(s) 453
SgrAI CRCCGGYG 1 cut(s) 481
SmiMI CAYNNNNRTG 1 cut(s) 354
SpeI ACTAGT 1 cut(s) 551
Sse9I AATT 5 cut(s) 71, 85, 205, 778, 914
SsiI CCGC 4 cut(s) 167, 485, 488, 857
SspI AATATT 1 cut(s) 472
SspMI CTAG 1 cut(s) 552
StyD4I CCNGG 4 cut(s) 340, 523, 587, 703
TaaI ACNGT 1 cut(s) 674
TaqI TCGA 4 cut(s) 201, 453, 463, 771
TasI AATT 5 cut(s) 71, 85, 205, 778, 914
TatI WGTACW 2 cut(s) 554, 690
TauI GCSGC 2 cut(s) 170, 488
TfiI GAWTC 2 cut(s) 455, 884
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 2 cut(s) 673, 687
TseFI GTSAC 1 cut(s) 668
Tsp45I GTSAC 1 cut(s) 668
TspDTI ATGAA 4 cut(s) 366, 372, 772, 829
TspRI CASTG 2 cut(s) 673, 687
Tth111I GACNNNGTC 1 cut(s) 893
XapI RAATTY 3 cut(s) 205, 778, 914
XceI RCATGY 1 cut(s) 877
XcmI CCANNNNNNNNNTGG 2 cut(s) 437, 733
XmnI GAANNNNTTC 1 cut(s) 792
XspI CTAG 1 cut(s) 552
Zsp2I ATGCAT 1 cut(s) 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.