FvH4_6g31210

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0017171
Physical Location & Seq
Reverse (-)
24365588 .. 24366847
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g31210.t1

Sequence Viewer

Length: 897 bp
ATGACCAAGAAACTCCAAAAGCGTCTCCAAGATTACCTCACCAAGATTAAGAAACCTTCCCCTGCTTTGATCCCAATCCCCTCTAAGAAATGGATGCGAACCTGTAAACACCCCAAAACCCTATCTTTCGCTATCAACAACACTGAGACGACTCAAGACAAAGATGATGATGCTGCAACACTCTCAGATATCGATGAGTTTCTCTTCGAGAATTTCAGGTCTCTCTACCTAAGAGACGATGATCAAGGAGCTGACACCACCGACGAGAACGAAAGAAAAAGAGAAGAGAAAACCCTAGAAATGAAACAAGGCCATGAAAAGGAAAGTGCAAACGAGCCCTTTTGGGATAAACCTCTACACCTGAAGAAACGTAGTCCTGATCAACATGAAACCCAAAACCAAGATGGGTTTCTGTTCGAGTCCCCTCGACTGAATATTGATCCACCGGCGGCGGATCTCTGTAGCTCACACAGGTTTTCAGTGTCCCCGGGTCGACTGTCAAGCTCCGTCCGGACTAGCACAACCACCACTACGACATCTGAGGACGCAGGATCCAGCTCTATGACGTCAACACGAACCCTAAACGTCGACTCTCCTACCACATCACATTCTAATAACAACGATCACCATGTGGCACTTCCGACTGACTGTATCTCAGTCTTGATGTACTCTCCCAACCCGGGCTACGAGTTTAAAAGATCCATGCATGACATGGTTGAAGCTCGCCTCAGAAACAATGCAAAGGTAGACTGGAATTTCATGGAGGAGCTTCTGTTTTGTTATCTCAATCTCAACAAGAAGAAGTCCCACAGGTTCATACTGAGCGCTTTCGCGGATTTGGTCGTGGACATGCGTCAGGATTCTGACACCGTTCTGGAGAGATCACGGAAACTTTGA

Protein Analysis

299

Amino Acids

34.25

Weight (kDa)

6.38

Isoelectric Point (pI)

48.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 224 - 284 3e-20 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017171)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79960
fragaria_vesca FvH4_6g31210
malus_domestica MD17G1194900.v1.1
prunus_persica Prupe.3G070900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0137881
rosa_laevigata RLG00000019687
rosa_roxburghii Rroxscaffold_2G00106690
rosa_rugosa Rorug02G0347700
rosa_samantha Rh2AG394000 Rh2BG401400 Rh2CG380700 Rh2DG416200
rosa_wichuraiana Rw2G032250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 569
AccI GTMKAC 3 cut(s) 493, 588, 747
AccII CGCG 1 cut(s) 833
AccIII TCCGGA 1 cut(s) 510
AciI CCGC 3 cut(s) 449, 452, 833
AclWI GGATC 6 cut(s) 64, 434, 462, 546, 559, 693
AcsI RAATTY 2 cut(s) 211, 754
AcuI CTGAAG 1 cut(s) 383
AcyI GRCGYC 1 cut(s) 566
AdeI CACNNNGTG 1 cut(s) 631
AfaI GTAC 1 cut(s) 668
AfeI AGCGCT 1 cut(s) 826
AfiI CCNNNNNNNGG 2 cut(s) 319, 680
AgsI TTSAA 1 cut(s) 719
AjuI GAANNNNNNNTTGG 2 cut(s) 393, 425
AluBI AGCT 6 cut(s) 251, 465, 504, 558, 722, 769
AluI AGCT 6 cut(s) 251, 465, 504, 558, 722, 769
Alw26I GTCTC 4 cut(s) 29, 140, 225, 228
AlwI GGATC 6 cut(s) 64, 434, 462, 546, 559, 693
Ama87I CYCGRG 2 cut(s) 487, 679
Aor13HI TCCGGA 1 cut(s) 510
Aor51HI AGCGCT 1 cut(s) 826
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 1 cut(s) 173
ApoI RAATTY 2 cut(s) 211, 754
AspLEI GCGC 1 cut(s) 827
AsuC2I CCSGG 4 cut(s) 488, 489, 680, 681
AsuHPI GGTGA 2 cut(s) 31, 617
AvaI CYCGRG 2 cut(s) 487, 679
BamHI GGATCC 1 cut(s) 551
BanII GRGCYC 1 cut(s) 339
BbvI GCAGC 1 cut(s) 160
BccI CCATC 1 cut(s) 398
BclI TGATCA 2 cut(s) 241, 379
BcnI CCSGG 4 cut(s) 488, 489, 680, 681
BcoDI GTCTC 4 cut(s) 29, 140, 225, 228
BfaI CTAG 2 cut(s) 296, 516
BfmI CTRYAG 1 cut(s) 460
BfoI RGCGCY 1 cut(s) 828
BisI GCNGC 2 cut(s) 174, 450
BlsI GCNGC 2 cut(s) 175, 451
Bme1390I CCNGG 4 cut(s) 488, 489, 680, 681
BmeT110I CYCGRG 2 cut(s) 487, 679
BmiI GGNNCC 1 cut(s) 553
BmrFI CCNGG 4 cut(s) 488, 489, 680, 681
BmsI GCATC 2 cut(s) 84, 160
BoxI GACNNNNGTC 1 cut(s) 852
BpmI CTGGAG 1 cut(s) 896
BpuEI CTTGAG 1 cut(s) 138
BpuMI CCSGG 4 cut(s) 488, 489, 680, 681
Bsa29I ATCGAT 1 cut(s) 192
BsaBI GATNNNNATC 1 cut(s) 74
BsaHI GRCGYC 1 cut(s) 566
BsaI GGTCTC 1 cut(s) 225
BsaJI CCNNGG 3 cut(s) 486, 487, 679
BsaWI WCCGGW 1 cut(s) 510
BsaXI ACNNNNNCTCC 2 cut(s) 758, 788
Bsc4I CCNNNNNNNGG 2 cut(s) 319, 680
Bse118I RCCGGY 1 cut(s) 445
Bse1I ACTGG 1 cut(s) 755
Bse8I GATNNNNATC 1 cut(s) 74
BseAI TCCGGA 1 cut(s) 510
BseCI ATCGAT 1 cut(s) 192
BseDI CCNNGG 3 cut(s) 486, 487, 679
BseGI GGATG 1 cut(s) 99
BseJI GATNNNNATC 1 cut(s) 74
BseLI CCNNNNNNNGG 2 cut(s) 319, 680
BseMII CTCAG 6 cut(s) 135, 198, 531, 669, 742, 812
BseNI ACTGG 1 cut(s) 755
BseRI GAGGAG 1 cut(s) 779
BseXI GCAGC 1 cut(s) 160
Bsh1236I CGCG 1 cut(s) 833
BshFI GGCC 1 cut(s) 312
BshVI ATCGAT 1 cut(s) 192
BsiHKCI CYCGRG 2 cut(s) 487, 679
BsiSI CCGG 4 cut(s) 446, 488, 511, 680
BslFI GGGAC 3 cut(s) 406, 469, 790
BslI CCNNNNNNNGG 2 cut(s) 319, 680
BsmAI GTCTC 4 cut(s) 29, 140, 225, 228
BsmBI CGTCTC 3 cut(s) 29, 140, 228
BsmFI GGGAC 3 cut(s) 406, 469, 790
BsnI GGCC 1 cut(s) 312
Bso31I GGTCTC 1 cut(s) 225
BsoBI CYCGRG 2 cut(s) 487, 679
Bsp1286I GDGCHC 1 cut(s) 339
Bsp13I TCCGGA 1 cut(s) 510
Bsp143I GATC 9 cut(s) 69, 241, 379, 439, 454, 551, 622, 698, 881
BspACI CCGC 3 cut(s) 449, 452, 833
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 6 cut(s) 136, 197, 532, 668, 741, 813
BspDI ATCGAT 1 cut(s) 192
BspEI TCCGGA 1 cut(s) 510
BspFNI CGCG 1 cut(s) 833
BspLI GGNNCC 1 cut(s) 553
BspPI GGATC 6 cut(s) 64, 434, 462, 546, 559, 693
BspTNI GGTCTC 1 cut(s) 225
BsrFI RCCGGY 1 cut(s) 445
BsrI ACTGG 1 cut(s) 755
BssAI RCCGGY 1 cut(s) 445
BssECI CCNNGG 3 cut(s) 486, 487, 679
BssMI GATC 9 cut(s) 69, 241, 379, 439, 454, 551, 622, 698, 881
BssNI GRCGYC 1 cut(s) 566
Bst4CI ACNGT 3 cut(s) 498, 650, 871
Bst6I CTCTTC 2 cut(s) 209, 279
BstACI GRCGYC 1 cut(s) 566
BstC8I GCNNGC 1 cut(s) 724
BstDEI CTNAG 8 cut(s) 84, 144, 184, 230, 540, 655, 728, 821
BstF5I GGATG 1 cut(s) 99
BstFNI CGCG 1 cut(s) 833
BstH2I RGCGCY 1 cut(s) 828
BstHHI GCGC 1 cut(s) 827
BstKTI GATC 9 cut(s) 72, 244, 382, 442, 457, 554, 625, 701, 884
BstMAI GTCTC 4 cut(s) 29, 140, 225, 228
BstMBI GATC 9 cut(s) 69, 241, 379, 439, 454, 551, 622, 698, 881
BstNSI RCATGY 1 cut(s) 853
BstPAI GACNNNNGTC 1 cut(s) 852
BstSCI CCNGG 4 cut(s) 486, 487, 678, 679
BstSFI CTRYAG 1 cut(s) 460
BstUI CGCG 1 cut(s) 833
BstV1I GCAGC 1 cut(s) 160
BstX2I RGATCY 3 cut(s) 454, 551, 698
BstYI RGATCY 3 cut(s) 454, 551, 698
Bsu15I ATCGAT 1 cut(s) 192
BsuRI GGCC 1 cut(s) 312
BsuTUI ATCGAT 1 cut(s) 192
BtsCI GGATG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 141, 486
Cac8I GCNNGC 1 cut(s) 724
CfoI GCGC 1 cut(s) 827
Cfr10I RCCGGY 1 cut(s) 445
Cfr9I CCCGGG 2 cut(s) 487, 679
ClaI ATCGAT 1 cut(s) 192
CseI GACGC 3 cut(s) 11, 554, 842
Csp6I GTAC 1 cut(s) 667
CviAII CATG 8 cut(s) 314, 386, 629, 703, 707, 712, 760, 850
CviJI RGCY 9 cut(s) 251, 312, 337, 465, 504, 558, 684, 722, 769
CviKI_1 RGCY 9 cut(s) 251, 312, 337, 465, 504, 558, 684, 722, 769
CviQI GTAC 1 cut(s) 667
DdeI CTNAG 8 cut(s) 84, 144, 184, 230, 540, 655, 728, 821
DpnI GATC 9 cut(s) 71, 243, 381, 441, 456, 553, 624, 700, 883
DpnII GATC 9 cut(s) 69, 241, 379, 439, 454, 551, 622, 698, 881
DraI TTTAAA 1 cut(s) 694
DraIII CACNNNGTG 1 cut(s) 631
Eam1104I CTCTTC 2 cut(s) 209, 279
EarI CTCTTC 2 cut(s) 209, 279
EciI GGCGGA 1 cut(s) 467
Eco24I GRGCYC 1 cut(s) 339
Eco31I GGTCTC 1 cut(s) 225
Eco32I GATATC 1 cut(s) 190
Eco47III AGCGCT 1 cut(s) 826
Eco57I CTGAAG 1 cut(s) 383
Eco88I CYCGRG 2 cut(s) 487, 679
EcoRV GATATC 1 cut(s) 190
EcoT22I ATGCAT 1 cut(s) 708
EcoT38I GRGCYC 1 cut(s) 339
Esp3I CGTCTC 3 cut(s) 29, 140, 228
FaeI CATG 8 cut(s) 317, 389, 632, 706, 710, 715, 763, 853
FaqI GGGAC 3 cut(s) 406, 469, 790
FatI CATG 8 cut(s) 313, 385, 628, 702, 706, 711, 759, 849
FbaI TGATCA 2 cut(s) 241, 379
FblI GTMKAC 3 cut(s) 493, 588, 747
Fnu4HI GCNGC 2 cut(s) 174, 450
FokI GGATG 1 cut(s) 106
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 2 cut(s) 174, 450
FspBI CTAG 2 cut(s) 296, 516
GlaI GCGC 1 cut(s) 826
GluI GCNGC 2 cut(s) 174, 450
GsuI CTGGAG 1 cut(s) 896
HaeII RGCGCY 1 cut(s) 828
HaeIII GGCC 1 cut(s) 312
HapII CCGG 4 cut(s) 446, 488, 511, 680
HgaI GACGC 3 cut(s) 11, 554, 842
HhaI GCGC 1 cut(s) 827
Hin1I GRCGYC 1 cut(s) 566
Hin1II CATG 8 cut(s) 317, 389, 632, 706, 710, 715, 763, 853
Hin6I GCGC 1 cut(s) 825
HinP1I GCGC 1 cut(s) 825
HincII GTYRAC 3 cut(s) 494, 570, 589
HindII GTYRAC 3 cut(s) 494, 570, 589
HinfI GANTC 4 cut(s) 151, 419, 590, 860
HpaII CCGG 4 cut(s) 446, 488, 511, 680
HphI GGTGA 2 cut(s) 31, 617
Hpy166II GTNNAC 6 cut(s) 107, 494, 570, 589, 748, 847
Hpy188I TCNGA 5 cut(s) 187, 541, 642, 731, 865
Hpy188III TCNNGA 7 cut(s) 155, 208, 377, 511, 661, 857, 875
Hpy8I GTNNAC 6 cut(s) 107, 494, 570, 589, 748, 847
Hpy99I CGWCG 2 cut(s) 266, 590
HpyAV CCTTC 1 cut(s) 66
HpyCH4III ACNGT 3 cut(s) 498, 650, 871
HpyCH4IV ACGT 3 cut(s) 370, 566, 585
HpyCH4V TGCA 4 cut(s) 176, 329, 706, 740
HpyF3I CTNAG 8 cut(s) 84, 144, 184, 230, 540, 655, 728, 821
HpySE526I ACGT 3 cut(s) 370, 566, 585
Hsp92I GRCGYC 1 cut(s) 566
Hsp92II CATG 8 cut(s) 317, 389, 632, 706, 710, 715, 763, 853
HspAI GCGC 1 cut(s) 825
Kpn2I TCCGGA 1 cut(s) 510
Ksp22I TGATCA 2 cut(s) 241, 379
Kzo9I GATC 9 cut(s) 69, 241, 379, 439, 454, 551, 622, 698, 881
LmnI GCTCC 3 cut(s) 248, 509, 766
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 2 cut(s) 84, 160
MaeI CTAG 2 cut(s) 296, 516
MaeII ACGT 3 cut(s) 370, 566, 585
MalI GATC 9 cut(s) 71, 243, 381, 441, 456, 553, 624, 700, 883
MboI GATC 9 cut(s) 69, 241, 379, 439, 454, 551, 622, 698, 881
MboII GAAGA 4 cut(s) 196, 296, 376, 811
MflI RGATCY 3 cut(s) 454, 551, 698
MhlI GDGCHC 1 cut(s) 339
MluCI AATT 2 cut(s) 211, 754
MlyI GAGTC 3 cut(s) 145, 428, 584
MmeI TCCRAC 1 cut(s) 665
MnlI CCTC 7 cut(s) 47, 91, 363, 435, 535, 737, 757
Mph1103I ATGCAT 1 cut(s) 708
MroI TCCGGA 1 cut(s) 510
MseI TTAA 2 cut(s) 48, 693
MspI CCGG 4 cut(s) 446, 488, 511, 680
MspR9I CCNGG 4 cut(s) 488, 489, 680, 681
MvnI CGCG 1 cut(s) 833
NciI CCSGG 4 cut(s) 488, 489, 680, 681
NdeII GATC 9 cut(s) 69, 241, 379, 439, 454, 551, 622, 698, 881
NlaIII CATG 8 cut(s) 317, 389, 632, 706, 710, 715, 763, 853
NlaIV GGNNCC 1 cut(s) 553
NsiI ATGCAT 1 cut(s) 708
NspI RCATGY 1 cut(s) 853
PfeI GAWTC 1 cut(s) 860
PkrI GCNGC 2 cut(s) 175, 451
PleI GAGTC 3 cut(s) 145, 427, 584
PpsI GAGTC 3 cut(s) 145, 427, 584
PshAI GACNNNNGTC 1 cut(s) 852
PspN4I GGNNCC 1 cut(s) 553
PsuI RGATCY 3 cut(s) 454, 551, 698
RsaI GTAC 1 cut(s) 668
RsaNI GTAC 1 cut(s) 667
SalI GTCGAC 2 cut(s) 492, 587
SaqAI TTAA 2 cut(s) 48, 693
SatI GCNGC 2 cut(s) 174, 450
Sau3AI GATC 9 cut(s) 69, 241, 379, 439, 454, 551, 622, 698, 881
SchI GAGTC 3 cut(s) 145, 428, 584
ScrFI CCNGG 4 cut(s) 488, 489, 680, 681
SduI GDGCHC 1 cut(s) 339
SfaNI GCATC 2 cut(s) 84, 160
SfcI CTRYAG 1 cut(s) 460
SgrAI CRCCGGYG 1 cut(s) 445
SmaI CCCGGG 2 cut(s) 489, 681
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
Sse9I AATT 2 cut(s) 211, 754
SsiI CCGC 3 cut(s) 449, 452, 833
SspI AATATT 1 cut(s) 436
SspMI CTAG 2 cut(s) 296, 516
StyD4I CCNGG 4 cut(s) 486, 487, 678, 679
TaaI ACNGT 3 cut(s) 498, 650, 871
TaiI ACGT 3 cut(s) 373, 569, 588
TaqI TCGA 6 cut(s) 192, 207, 417, 427, 493, 588
TasI AATT 2 cut(s) 211, 754
TatI WGTACW 1 cut(s) 666
TauI GCSGC 1 cut(s) 452
TfiI GAWTC 1 cut(s) 860
Tru1I TTAA 2 cut(s) 48, 693
Tru9I TTAA 2 cut(s) 48, 693
TscAI CASTG 2 cut(s) 148, 486
TseI GCWGC 1 cut(s) 173
TspDTI ATGAA 5 cut(s) 317, 330, 402, 748, 805
TspGWI ACGGA 1 cut(s) 496
TspMI CCCGGG 2 cut(s) 487, 679
TspRI CASTG 2 cut(s) 148, 486
XapI RAATTY 2 cut(s) 211, 754
XceI RCATGY 1 cut(s) 853
XcmI CCANNNNNNNNNTGG 2 cut(s) 401, 709
XmaI CCCGGG 2 cut(s) 487, 679
XmiI GTMKAC 3 cut(s) 493, 588, 747
XspI CTAG 2 cut(s) 296, 516
ZraI GACGTC 1 cut(s) 567
Zsp2I ATGCAT 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.