Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0017171

Physical Location & Seq

Genomic Coordinates Forward (+)

5082748 .. 5084084

Gene Structure 1337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G070900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGCCCAAGAAACTCCAAAAGTATCTCCGAGATTATCTCTCCAAGGTAAAGAAACCACCCCCACAAATCCTGTTTCCCTCCAGAAAATGGATCCGATCAGGTTGTAAGCACCCAAAAACCCTATCATTTGCCATCAATCGTGGCCAAAAGGACGCCCACAACGACAAGGATGATGCAGCCTCACTCTCGGATATTGACCAGTTTTTGTTTGAGAATTTCAGGTCACTTTATCTGAAAGACGACGACGAAGTTGAAGACGATGAAAGTGAAAAAAGGGGTAAAGAAGTCCGTCGCACCGAGGTCTTTTGGGATAAAACTCTACGCTTGAAAGAAAGTCGTGACGAGCATCACGGCACTGAAAGCTCAGGCGGGGTTTTGTTTGAATCCCCTCGATTCAATATCGATCCACCCGCGGTGGATCTTTGTGGCTCTCACCGGTTCTTTGTGTCCCCTGGCCGAGCATCGAGCTCAGTCATGGAGGAGGCTCGGCTAAGCACCACCACCACGTCCGAAGACTTAGGCTCAAGCTCAATCTCAACTCCAACCCTAAATGACTCAGCCACTACGTCGAACTCTAATAACAATGATCATGCAAAAGACGTCACGCTTCCCAACGACTGCATCGCCGTCTTGACCTACTCCCCAAGCCCCTACCACGATTTTCGAAGATCCATGCAGGACATGGTGGAATCCCGTCTGCGAAATCATGCAAAGGTTGATTGGAATTTCATGGAGGAGCTTCTGTTTTGCTACCTGAACCTGAACGAGAAGAAGTCTTACAGGTTCATATTAAGTGCCTTTTCGGATTTGATTGTGGATTTGCGTCAAAATTCGGACAGAAGTTCTGAGAGGTCGTCGTCGTCATCAAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

292

Amino Acids

33.37

Weight (kDa)

6.27

Isoelectric Point (pI)

56.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79960
fragaria_vesca	FvH4_6g31210
malus_domestica	MD17G1194900.v1.1
prunus_persica	Prupe.3G070900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0137881
rosa_laevigata	RLG00000019687
rosa_roxburghii	Rroxscaffold_2G00106690
rosa_rugosa	Rorug02G0347700
rosa_samantha	Rh2AG394000 Rh2BG401400 Rh2CG380700 Rh2DG416200
rosa_wichuraiana	Rw2G032250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	603
AccB7I	CCANNNNNTGG	1 cut(s)	87
AccII	CGCG	1 cut(s)	413
AciI	CCGC	3 cut(s)	369, 411, 413
AclWI	GGATC	5 cut(s)	85, 98, 398, 426, 663
AcoI	YGGCCR	2 cut(s)	142, 454
AcsI	RAATTY	4 cut(s)	214, 724, 829, 869
AcyI	GRCGYC	2 cut(s)	153, 600
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgeI	ACCGGT	1 cut(s)	435
AgsI	TTSAA	4 cut(s)	254, 328, 383, 397
AjiI	CACGTC	1 cut(s)	507
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	4 cut(s)	363, 468, 528, 739
AluI	AGCT	4 cut(s)	363, 468, 528, 739
Alw21I	GWGCWC	1 cut(s)	470
AlwI	GGATC	5 cut(s)	85, 98, 398, 426, 663
AoxI	GGCC	2 cut(s)	142, 454
ApeKI	GCWGC	1 cut(s)	176
ApoI	RAATTY	4 cut(s)	214, 724, 829, 869
AsiGI	ACCGGT	1 cut(s)	435
AsuHPI	GGTGA	1 cut(s)	425
AsuII	TTCGAA	1 cut(s)	664
BalI	TGGCCA	1 cut(s)	144
BamHI	GGATCC	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	470
BarI	GAAGNNNNNNTAC	2 cut(s)	761, 793
BbsI	GAAGAC	2 cut(s)	261, 519
Bbv12I	GWGCWC	1 cut(s)	470
BbvI	GCAGC	1 cut(s)	188
BccI	CCATC	1 cut(s)	140
BceAI	ACGGC	2 cut(s)	367, 611
BciT130I	CCWGG	1 cut(s)	453
BclI	TGATCA	1 cut(s)	586
BisI	GCNGC	1 cut(s)	177
BlpI	GCTNAGC	1 cut(s)	491
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	453
BmgBI	CACGTC	1 cut(s)	507
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	453
BmsI	GCATC	4 cut(s)	163, 355, 470, 630
BpiI	GAAGAC	2 cut(s)	261, 519
BplI	GAGNNNNNCTC	2 cut(s)	21, 53
BpmI	CTGGAG	1 cut(s)	64
Bpu10I	CCTNAGC	1 cut(s)	364
Bpu1102I	GCTNAGC	1 cut(s)	491
Bpu14I	TTCGAA	1 cut(s)	664
BpuEI	CTTGAG	1 cut(s)	508
Bsa29I	ATCGAT	1 cut(s)	402
BsaHI	GRCGYC	2 cut(s)	153, 600
BsaJI	CCNNGG	4 cut(s)	42, 297, 411, 451
BsaWI	WCCGGW	1 cut(s)	435
BsaXI	ACNNNNNCTCC	2 cut(s)	728, 758
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse118I	RCCGGY	1 cut(s)	435
Bse1I	ACTGG	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	453
BseCI	ATCGAT	1 cut(s)	402
BseDI	CCNNGG	4 cut(s)	42, 297, 411, 451
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMII	CTCAG	4 cut(s)	378, 483, 570, 837
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	2 cut(s)	494, 749
BseXI	GCAGC	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	413
BshFI	GGCC	2 cut(s)	144, 456
BshTI	ACCGGT	1 cut(s)	435
BshVI	ATCGAT	1 cut(s)	402
BsiHKAI	GWGCWC	1 cut(s)	470
BsiSI	CCGG	1 cut(s)	436
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	2 cut(s)	144, 456
Bsp119I	TTCGAA	1 cut(s)	664
Bsp1286I	GDGCHC	1 cut(s)	470
Bsp143I	GATC	6 cut(s)	90, 95, 403, 418, 586, 668
Bsp1720I	GCTNAGC	1 cut(s)	491
BspACI	CCGC	3 cut(s)	369, 411, 413
BspANI	GGCC	2 cut(s)	144, 456
BspCNI	CTCAG	4 cut(s)	377, 482, 569, 838
BspDI	ATCGAT	1 cut(s)	402
BspFNI	CGCG	1 cut(s)	413
BspLI	GGNNCC	1 cut(s)	92
BspPI	GGATC	5 cut(s)	85, 98, 398, 426, 663
BspT104I	TTCGAA	1 cut(s)	664
BsrFI	RCCGGY	1 cut(s)	435
BsrI	ACTGG	1 cut(s)	199
BssAI	RCCGGY	1 cut(s)	435
BssECI	CCNNGG	4 cut(s)	42, 297, 411, 451
BssMI	GATC	6 cut(s)	90, 95, 403, 418, 586, 668
BssNI	GRCGYC	2 cut(s)	153, 600
BssT1I	CCWWGG	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	453
BstACI	GRCGYC	2 cut(s)	153, 600
BstBI	TTCGAA	1 cut(s)	664
BstDEI	CTNAG	6 cut(s)	364, 469, 491, 517, 556, 846
BstDSI	CCRYGG	1 cut(s)	411
BstF5I	GGATG	1 cut(s)	175
BstFNI	CGCG	1 cut(s)	413
BstKTI	GATC	6 cut(s)	93, 98, 406, 421, 589, 671
BstMBI	GATC	6 cut(s)	90, 95, 403, 418, 586, 668
BstMWI	GCNNNNNNNGC	1 cut(s)	360
BstNI	CCWGG	1 cut(s)	453
BstSCI	CCNGG	1 cut(s)	451
BstUI	CGCG	1 cut(s)	413
BstV1I	GCAGC	1 cut(s)	188
BstV2I	GAAGAC	2 cut(s)	261, 519
BstX2I	RGATCY	3 cut(s)	90, 418, 668
BstYI	RGATCY	3 cut(s)	90, 418, 668
Bsu15I	ATCGAT	1 cut(s)	402
BsuRI	GGCC	2 cut(s)	144, 456
BsuTUI	ATCGAT	1 cut(s)	402
BtgI	CCRYGG	1 cut(s)	411
BtgZI	GCGATG	1 cut(s)	607
BtrI	CACGTC	1 cut(s)	507
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	354
Cfr10I	RCCGGY	1 cut(s)	435
Cfr42I	CCGCGG	1 cut(s)	414
ClaI	ATCGAT	1 cut(s)	402
CseI	GACGC	2 cut(s)	161, 812
CspAI	ACCGGT	1 cut(s)	435
CviAII	CATG	6 cut(s)	475, 590, 673, 682, 707, 730
DdeI	CTNAG	6 cut(s)	364, 469, 491, 517, 556, 846
DpnI	GATC	6 cut(s)	92, 97, 405, 420, 588, 670
DpnII	GATC	6 cut(s)	90, 95, 403, 418, 586, 668
EaeI	YGGCCR	2 cut(s)	142, 454
Ecl136II	GAGCTC	1 cut(s)	468
Eco130I	CCWWGG	1 cut(s)	42
Eco24I	GRGCYC	1 cut(s)	470
Eco53kI	GAGCTC	1 cut(s)	468
EcoICRI	GAGCTC	1 cut(s)	468
EcoRII	CCWGG	1 cut(s)	451
EcoT14I	CCWWGG	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	470
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	6 cut(s)	478, 593, 676, 685, 710, 733
FaiI	YATR	7 cut(s)	476, 591, 674, 683, 708, 731, 788
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	6 cut(s)	474, 589, 672, 681, 706, 729
FauI	CCCGC	2 cut(s)	362, 418
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	182
FriOI	GRGCYC	1 cut(s)	470
Fsp4HI	GCNGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	64
HaeIII	GGCC	2 cut(s)	144, 456
HapII	CCGG	1 cut(s)	436
HgaI	GACGC	2 cut(s)	161, 812
Hin1I	GRCGYC	2 cut(s)	153, 600
Hin1II	CATG	6 cut(s)	478, 593, 676, 685, 710, 733
HinfI	GANTC	4 cut(s)	383, 393, 554, 689
HpaII	CCGG	1 cut(s)	436
HphI	GGTGA	1 cut(s)	425
Hpy188I	TCNGA	8 cut(s)	29, 95, 190, 234, 511, 805, 835, 847
Hpy188III	TCNNGA	3 cut(s)	81, 338, 631
Hpy99I	CGWCG	6 cut(s)	245, 248, 294, 571, 859, 862
HpyCH4IV	ACGT	3 cut(s)	506, 566, 600
HpyCH4V	TGCA	5 cut(s)	176, 593, 621, 676, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	360
HpyF3I	CTNAG	6 cut(s)	364, 469, 491, 517, 556, 846
HpySE526I	ACGT	3 cut(s)	506, 566, 600
Hsp92I	GRCGYC	2 cut(s)	153, 600
Hsp92II	CATG	6 cut(s)	478, 593, 676, 685, 710, 733
Ksp22I	TGATCA	1 cut(s)	586
KspI	CCGCGG	1 cut(s)	414
Kzo9I	GATC	6 cut(s)	90, 95, 403, 418, 586, 668
LmnI	GCTCC	1 cut(s)	736
Lsp1109I	GCAGC	1 cut(s)	188
LweI	GCATC	4 cut(s)	163, 355, 470, 630
MaeII	ACGT	3 cut(s)	506, 566, 600
MaeIII	GTNAC	3 cut(s)	222, 338, 601
MalI	GATC	6 cut(s)	92, 97, 405, 420, 588, 670
MboI	GATC	6 cut(s)	90, 95, 403, 418, 586, 668
MboII	GAAGA	4 cut(s)	266, 524, 678, 781
MflI	RGATCY	3 cut(s)	90, 418, 668
MhlI	GDGCHC	1 cut(s)	470
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	4 cut(s)	214, 724, 829, 869
MluNI	TGGCCA	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	548
MmeI	TCCRAC	1 cut(s)	566
MnlI	CCTC	8 cut(s)	88, 190, 292, 399, 472, 475, 727, 843
Mox20I	TGGCCA	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	1 cut(s)	791
Msp20I	TGGCCA	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	1 cut(s)	436
MspR9I	CCNGG	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	453
MvnI	CGCG	1 cut(s)	413
MwoI	GCNNNNNNNGC	1 cut(s)	360
NdeII	GATC	6 cut(s)	90, 95, 403, 418, 586, 668
NlaIII	CATG	6 cut(s)	478, 593, 676, 685, 710, 733
NlaIV	GGNNCC	1 cut(s)	92
NmeAIII	GCCGAG	2 cut(s)	466, 482
NmuCI	GTSAC	3 cut(s)	222, 338, 601
NspV	TTCGAA	1 cut(s)	664
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PfeI	GAWTC	3 cut(s)	383, 393, 689
PflMI	CCANNNNNTGG	1 cut(s)	87
PinAI	ACCGGT	1 cut(s)	435
PkrI	GCNGC	1 cut(s)	178
PleI	GAGTC	1 cut(s)	548
PpsI	GAGTC	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	470
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	1 cut(s)	92
PsuI	RGATCY	3 cut(s)	90, 418, 668
SacI	GAGCTC	1 cut(s)	470
SacII	CCGCGG	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	791
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	6 cut(s)	90, 95, 403, 418, 586, 668
SchI	GAGTC	1 cut(s)	548
ScrFI	CCNGG	1 cut(s)	453
SduI	GDGCHC	1 cut(s)	470
SfaNI	GCATC	4 cut(s)	163, 355, 470, 630
Sfr303I	CCGCGG	1 cut(s)	414
SfuI	TTCGAA	1 cut(s)	664
SgrBI	CCGCGG	1 cut(s)	414
SmlI	CTYRAG	1 cut(s)	523
SmoI	CTYRAG	1 cut(s)	523
Sse9I	AATT	4 cut(s)	214, 724, 829, 869
SsiI	CCGC	3 cut(s)	369, 411, 413
SstI	GAGCTC	1 cut(s)	470
StyD4I	CCNGG	1 cut(s)	451
StyI	CCWWGG	1 cut(s)	42
TaiI	ACGT	3 cut(s)	509, 569, 603
TaqI	TCGA	5 cut(s)	391, 402, 464, 569, 664
TasI	AATT	4 cut(s)	214, 724, 829, 869
TfiI	GAWTC	3 cut(s)	383, 393, 689
Tru1I	TTAA	1 cut(s)	791
Tru9I	TTAA	1 cut(s)	791
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	3 cut(s)	222, 338, 601
TseI	GCWGC	1 cut(s)	176
Tsp45I	GTSAC	3 cut(s)	222, 338, 601
TspDTI	ATGAA	3 cut(s)	276, 718, 775
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	1 cut(s)	361
Van91I	CCANNNNNTGG	1 cut(s)	87
XapI	RAATTY	4 cut(s)	214, 724, 829, 869
XcmI	CCANNNNNNNNNTGG	1 cut(s)	679
ZraI	GACGTC	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.