AT1G80590
WRKY Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0020198
Physical Location & Seq
Reverse (-)
30296166 .. 30297224
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G80590.1

Sequence Viewer

Length: 708 bp
ATGTCTCTTGAGATTGATGCGAAGGCTGTCTCAGCACTCCTCCTTGGCCAAGGATGCGCTAACAATCTCAAGACGCTCCTCAAAAACCATGAAACAGGCTCAGTTTCAACAGAGCCACTCATCAACTCCATTCTTGATTCTTTCTCGTTTGCTCTGTCTTCTCAGAACATACCACGTCATGTGTCTCAAAGATCATCAAAGAAAAAGATGTGTGGAATACAAGGTATGGAAGATTCTCCGACACCGGCCCACATTGATGGCTTCATCTGGAGGAAATATGGACAAAAGACCATCAAAACCTCTCCGCACCAAAGGTGGTACTACCGATGTGCCTATGCGAAAGACCAAAACTGCGACGCTACCAAGCGGGTACAGAAGATCCAAGACAATCCTCCAGTGTACAGAAACACCTATGTCGGACAACATGCATGTGAAGCTCCAGCTTATGCAGTTAATAATGGTGGTACATACGGTTCAAAAATGATCAAATTCGACTATGTTATTCCTGAATCGGTTATGCCTCAACCTTTATCAATTGATTCCCAAGAAATTACCATGGAGGATAAAGACACAGACGACCATATTTTGAACTATATTAACGAGCATTTGATGGAAGATGAGGCGTATGATGTTTTCCCTGATGTACTTGGAGAACGTTGCTGCTTTGGATTAGAACCCTTTCCAGGATTGAACATTAATAAATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WRKY

Protein Analysis

235

Amino Acids

26.4

Weight (kDa)

5.8

Isoelectric Point (pI)

59.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 86 - 145 1.9e-21 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020198)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66550 AT1G66550 AT1G66560 AT1G66600 AT1G80590 AT5G01900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 305, 367
AclI AACGTT 1 cut(s) 655
AclWI GGATC 1 cut(s) 373
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 488
AfaI GTAC 5 cut(s) 320, 372, 401, 466, 645
AfiI CCNNNNNNNGG 1 cut(s) 683
AgsI TTSAA 4 cut(s) 108, 477, 589, 691
AjiI CACGTC 1 cut(s) 176
AjnI CCWGG 1 cut(s) 682
AluBI AGCT 2 cut(s) 437, 443
AluI AGCT 2 cut(s) 437, 443
Alw26I GTCTC 3 cut(s) 9, 34, 189
AlwI GGATC 1 cut(s) 373
AoxI GGCC 2 cut(s) 46, 246
ApeKI GCWGC 1 cut(s) 660
ApoI RAATTY 1 cut(s) 488
AseI ATTAAT 1 cut(s) 696
Asp700I GAANNNNTTC 1 cut(s) 678
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 1 cut(s) 247
BalI TGGCCA 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 647
BccI CCATC 3 cut(s) 251, 299, 604
BciT130I CCWGG 1 cut(s) 684
BclI TGATCA 1 cut(s) 483
BcoDI GTCTC 3 cut(s) 9, 34, 189
BisI GCNGC 1 cut(s) 661
BlsI GCNGC 1 cut(s) 662
Bme1390I CCNGG 1 cut(s) 684
BmgBI CACGTC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 247
BmrFI CCNGG 1 cut(s) 684
BmsI GCATC 2 cut(s) 7, 44
BpiI GAAGAC 1 cut(s) 150
BpmI CTGGAG 3 cut(s) 289, 378, 423
BpuEI CTTGAG 2 cut(s) 29, 53
BsaJI CCNNGG 3 cut(s) 43, 49, 555
Bsc4I CCNNNNNNNGG 1 cut(s) 683
Bse118I RCCGGY 1 cut(s) 244
Bse1I ACTGG 1 cut(s) 395
BseBI CCWGG 1 cut(s) 684
BseDI CCNNGG 3 cut(s) 43, 49, 555
BseGI GGATG 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 683
BseMII CTCAG 3 cut(s) 45, 114, 176
BseNI ACTGG 1 cut(s) 395
BseRI GAGGAG 2 cut(s) 29, 68
BseXI GCAGC 1 cut(s) 647
BshFI GGCC 2 cut(s) 48, 248
BsiSI CCGG 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 683
BsmAI GTCTC 3 cut(s) 9, 34, 189
BsnI GGCC 2 cut(s) 48, 248
Bsp1407I TGTACA 1 cut(s) 399
Bsp143I GATC 3 cut(s) 191, 378, 483
Bsp19I CCATGG 1 cut(s) 555
BspACI CCGC 2 cut(s) 305, 367
BspANI GGCC 2 cut(s) 48, 248
BspCNI CTCAG 3 cut(s) 44, 113, 175
BspPI GGATC 1 cut(s) 373
BsrFI RCCGGY 1 cut(s) 244
BsrGI TGTACA 1 cut(s) 399
BsrI ACTGG 1 cut(s) 395
BssAI RCCGGY 1 cut(s) 244
BssECI CCNNGG 3 cut(s) 43, 49, 555
BssMI GATC 3 cut(s) 191, 378, 483
BssT1I CCWWGG 3 cut(s) 43, 49, 555
Bst2UI CCWGG 1 cut(s) 684
Bst4CI ACNGT 1 cut(s) 473
BstAUI TGTACA 1 cut(s) 399
BstDEI CTNAG 3 cut(s) 31, 100, 162
BstDSI CCRYGG 1 cut(s) 555
BstF5I GGATG 1 cut(s) 59
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 3 cut(s) 194, 381, 486
BstMAI GTCTC 3 cut(s) 9, 34, 189
BstMBI GATC 3 cut(s) 191, 378, 483
BstMWI GCNNNNNNNGC 3 cut(s) 32, 54, 434
BstNI CCWGG 1 cut(s) 684
BstNSI RCATGY 2 cut(s) 428, 432
BstSCI CCNGG 1 cut(s) 682
BstV1I GCAGC 1 cut(s) 647
BstV2I GAAGAC 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 378
BstXI CCANNNNNNTGG 1 cut(s) 257
BstYI RGATCY 1 cut(s) 378
BsuRI GGCC 2 cut(s) 48, 248
BtgI CCRYGG 1 cut(s) 555
BtrI CACGTC 1 cut(s) 176
BtsCI GGATG 1 cut(s) 59
BtsIMutI CAGTG 1 cut(s) 402
CfoI GCGC 1 cut(s) 59
Cfr10I RCCGGY 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 247
CseI GACGC 2 cut(s) 82, 365
Csp6I GTAC 5 cut(s) 319, 371, 400, 465, 644
CviAII CATG 5 cut(s) 89, 179, 425, 429, 556
CviJI RGCY 8 cut(s) 26, 48, 99, 115, 248, 261, 437, 443
CviKI_1 RGCY 8 cut(s) 26, 48, 99, 115, 248, 261, 437, 443
CviQI GTAC 5 cut(s) 319, 371, 400, 465, 644
DdeI CTNAG 3 cut(s) 31, 100, 162
DpnI GATC 3 cut(s) 193, 380, 485
DpnII GATC 3 cut(s) 191, 378, 483
EaeI YGGCCR 1 cut(s) 46
Eco130I CCWWGG 3 cut(s) 43, 49, 555
EcoRII CCWGG 1 cut(s) 682
EcoT14I CCWWGG 3 cut(s) 43, 49, 555
EcoT22I ATGCAT 1 cut(s) 430
ErhI CCWWGG 3 cut(s) 43, 49, 555
FaeI CATG 5 cut(s) 92, 182, 428, 432, 559
FatI CATG 5 cut(s) 88, 178, 424, 428, 555
FauI CCCGC 1 cut(s) 360
FbaI TGATCA 1 cut(s) 483
Fnu4HI GCNGC 1 cut(s) 661
FokI GGATG 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 661
GlaI GCGC 1 cut(s) 58
GluI GCNGC 1 cut(s) 661
GsuI CTGGAG 3 cut(s) 289, 378, 423
HaeIII GGCC 2 cut(s) 48, 248
HapII CCGG 1 cut(s) 245
HgaI GACGC 2 cut(s) 82, 365
HhaI GCGC 1 cut(s) 59
Hin1II CATG 5 cut(s) 92, 182, 428, 432, 559
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HinfI GANTC 4 cut(s) 137, 233, 509, 539
HpaII CCGG 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 3 cut(s) 165, 240, 419
Hpy188III TCNNGA 5 cut(s) 8, 70, 134, 268, 506
Hpy8I GTNNAC 1 cut(s) 400
Hpy99I CGWCG 1 cut(s) 359
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 1 cut(s) 473
HpyCH4IV ACGT 2 cut(s) 175, 655
HpyCH4V TGCA 2 cut(s) 428, 449
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 54, 434
HpyF3I CTNAG 3 cut(s) 31, 100, 162
HpySE526I ACGT 2 cut(s) 175, 655
Hsp92II CATG 5 cut(s) 92, 182, 428, 432, 559
HspAI GCGC 1 cut(s) 57
Ksp22I TGATCA 1 cut(s) 483
Kzo9I GATC 3 cut(s) 191, 378, 483
LmnI GCTCC 2 cut(s) 81, 442
LpnPI CCDG 9 cut(s) 81, 253, 258, 408, 453, 519, 651, 669, 696
Lsp1109I GCAGC 1 cut(s) 647
LweI GCATC 2 cut(s) 7, 44
MaeII ACGT 2 cut(s) 175, 655
MalI GATC 3 cut(s) 193, 380, 485
MboI GATC 3 cut(s) 191, 378, 483
MboII GAAGA 4 cut(s) 150, 242, 388, 626
MfeI CAATTG 1 cut(s) 534
MflI RGATCY 1 cut(s) 378
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 3 cut(s) 488, 534, 549
MluNI TGGCCA 1 cut(s) 48
MmeI TCCRAC 2 cut(s) 263, 397
MnlI CCTC 8 cut(s) 50, 89, 264, 310, 402, 531, 553, 613
Mox20I TGGCCA 1 cut(s) 48
Mph1103I ATGCAT 1 cut(s) 430
MroXI GAANNNNTTC 1 cut(s) 678
MscI TGGCCA 1 cut(s) 48
MseI TTAA 4 cut(s) 453, 597, 696, 706
MslI CAYNNNNRTG 2 cut(s) 255, 429
Msp20I TGGCCA 1 cut(s) 48
MspI CCGG 1 cut(s) 245
MspR9I CCNGG 1 cut(s) 684
MunI CAATTG 1 cut(s) 534
MvaI CCWGG 1 cut(s) 684
MwoI GCNNNNNNNGC 3 cut(s) 32, 54, 434
NcoI CCATGG 1 cut(s) 555
NdeII GATC 3 cut(s) 191, 378, 483
NlaIII CATG 5 cut(s) 92, 182, 428, 432, 559
NsiI ATGCAT 1 cut(s) 430
NspI RCATGY 2 cut(s) 428, 432
PdmI GAANNNNTTC 1 cut(s) 678
PfeI GAWTC 4 cut(s) 137, 233, 509, 539
PfoI TCCNGGA 1 cut(s) 682
PkrI GCNGC 1 cut(s) 662
PshBI ATTAAT 1 cut(s) 696
Psp1406I AACGTT 1 cut(s) 655
Psp6I CCWGG 1 cut(s) 682
PspGI CCWGG 1 cut(s) 682
PspPI GGNCC 1 cut(s) 247
PsrI GAACNNNNNNTAC 2 cut(s) 457, 489
PsuI RGATCY 1 cut(s) 378
RsaI GTAC 5 cut(s) 320, 372, 401, 466, 645
RsaNI GTAC 5 cut(s) 319, 371, 400, 465, 644
RseI CAYNNNNRTG 2 cut(s) 255, 429
SaqAI TTAA 4 cut(s) 453, 597, 696, 706
SatI GCNGC 1 cut(s) 661
Sau3AI GATC 3 cut(s) 191, 378, 483
Sau96I GGNCC 1 cut(s) 247
ScrFI CCNGG 1 cut(s) 684
SetI ASST 9 cut(s) 178, 226, 302, 317, 413, 439, 445, 529, 658
SfaNI GCATC 2 cut(s) 7, 44
SmiMI CAYNNNNRTG 2 cut(s) 255, 429
SmlI CTYRAG 2 cut(s) 8, 68
SmoI CTYRAG 2 cut(s) 8, 68
Sse9I AATT 3 cut(s) 488, 534, 549
SsiI CCGC 2 cut(s) 305, 367
StyD4I CCNGG 1 cut(s) 682
StyI CCWWGG 3 cut(s) 43, 49, 555
TaaI ACNGT 1 cut(s) 473
TaiI ACGT 2 cut(s) 178, 658
TaqI TCGA 1 cut(s) 492
TasI AATT 3 cut(s) 488, 534, 549
TatI WGTACW 2 cut(s) 399, 643
TfiI GAWTC 4 cut(s) 137, 233, 509, 539
Tru1I TTAA 4 cut(s) 453, 597, 696, 706
Tru9I TTAA 4 cut(s) 453, 597, 696, 706
TscAI CASTG 1 cut(s) 402
TseI GCWGC 1 cut(s) 660
TspDTI ATGAA 2 cut(s) 105, 253
TspRI CASTG 1 cut(s) 402
VspI ATTAAT 1 cut(s) 696
XapI RAATTY 1 cut(s) 488
XceI RCATGY 2 cut(s) 428, 432
XmnI GAANNNNTTC 1 cut(s) 678
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.