Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012715

Physical Location & Seq

Genomic Coordinates Forward (+)

30358000 .. 30359606

Gene Structure 1607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80780.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGTCTCTGTTTCTGAAAGACGATTCGATTCAAATTCGCGAAGTCTGGAACGATAACCTTCAAGAAGAAATGGATCTGATCCGAGATGTCGTCGACGACTTCCCTTACGTCGCCATGGACACTGAGTTCCCCGGCATCGTCGTCCGACCTGTCGGAACTTTCAAATCCAACGCTGATTACCACTACGAAACCTTGAAGACGAACGTCAACATCCTCAAGATGATCCAGCTTGGCCTCACTTTCTCCAATGAACAAGGCAACCTCCCTACCTGTGGCACTGACAAGTATTGCATCTGGCAATTCAATTTCCGAGAATTCGATCTCGATTCCGATATCTTCGCTCTCGATTCCATCGAGCTTCTCAAGCAATCAGGCATCGACCTTGCCAAAAACACGCTAGACGGGATCGATTCCAAGAGATTCGCAGAGCTCTTAATGTCCTCCGGGATCGTCTTGAACGAAAACGTGCATTGGGTTACATTCCACAGTGGGTACGATTTCGGATACTTGCTAAAGCTCTTGACTTGCCAAAACCTGCCGGATTCGCAAACAGACTTCTTCAAGCTCATCAACGTTTATTTTCCGACCGTGTACGACATTAAACACCTGATGAAGTTCTGCAACAGCCTTCACGGTGGTCTCAACAAGCTTGCGGAGTTGCTGGAAGTGGAGAGAGTTGGGATCTGTCACCAAGCTGGTTCGGATAGTTTACTCACGTCTTGTACTTTCAGAAAGCTCAAGGAGAATTTCTTCGTTGGTCCGTTGCACAAATATTCTGGTGTTTTGTATGGATTAGGTGTTGAAAATGGTCAGGTTGCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000288 GO:0000291 GO:0000932 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004535 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017148 GO:0019222 GO:0019439 GO:0030014 GO:0030015 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032991 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

274

Amino Acids

31.2

Weight (kDa)

4.84

Isoelectric Point (pI)

31.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1	PF04857	15 - 136	2.9e-12	CAF1 family ribonuclease
CAF1	PF04857	157 - 243	2.9e-06	CAF1 family ribonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80780 AT1G80780 AT1G80780 AT2G32070
fragaria_vesca	FvH4_6g28750
malus_domestica	MD17G1222200.v1.1
prunus_persica	Prupe.3G097100_v2.0.a1
pyrus_communis	pycom09g14370 pycom17g22590
rosa_chinensis	RchiOBHm_Chr2g0133151
rosa_laevigata	RLG00000019312
rosa_roxburghii	Rroxscaffold_2G00111360
rosa_rugosa	Rorug02G0310300
rosa_samantha	Rh2AG362600 Rh2BG368200 Rh2CG345800 Rh2DG385500
rosa_wichuraiana	Rw2G029480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	543
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	1 cut(s)	39
AciI	CCGC	1 cut(s)	653
AclI	AACGTT	1 cut(s)	573
AclWI	GGATC	6 cut(s)	73, 81, 217, 413, 455, 689
AcsI	RAATTY	3 cut(s)	33, 314, 745
AfaI	GTAC	3 cut(s)	494, 593, 724
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	8 cut(s)	32, 62, 163, 196, 304, 457, 562, 803
AjiI	CACGTC	1 cut(s)	717
AloI	GAACNNNNNNTCC	2 cut(s)	110, 142
AluBI	AGCT	8 cut(s)	229, 358, 430, 517, 565, 649, 695, 736
AluI	AGCT	8 cut(s)	229, 358, 430, 517, 565, 649, 695, 736
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	2 cut(s)	9, 644
AlwI	GGATC	6 cut(s)	73, 81, 217, 413, 455, 689
AoxI	GGCC	1 cut(s)	232
ApoI	RAATTY	3 cut(s)	33, 314, 745
Asp700I	GAANNNNTTC	1 cut(s)	749
AspS9I	GGNCC	1 cut(s)	758
AsuC2I	CCSGG	2 cut(s)	132, 445
AsuHPI	GGTGA	1 cut(s)	680
AvaII	GGWCC	1 cut(s)	758
BanII	GRGCYC	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	432
BccI	CCATC	1 cut(s)	359
BciVI	GTATCC	1 cut(s)	497
BcnI	CCSGG	2 cut(s)	132, 445
BcoDI	GTCTC	2 cut(s)	9, 644
BfaI	CTAG	2 cut(s)	398, 823
BfuAI	ACCTGC	1 cut(s)	543
BfuI	GTATCC	1 cut(s)	497
Bme1390I	CCNGG	2 cut(s)	132, 445
Bme18I	GGWCC	1 cut(s)	758
BmgBI	CACGTC	1 cut(s)	717
BmgT120I	GGNCC	1 cut(s)	758
BmrFI	CCNGG	2 cut(s)	132, 445
BmsI	GCATC	3 cut(s)	144, 300, 384
BoxI	GACNNNNGTC	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	203
BpuEI	CTTGAG	3 cut(s)	200, 347, 722
BpuMI	CCSGG	2 cut(s)	132, 445
Bsa29I	ATCGAT	1 cut(s)	408
BsaI	GGTCTC	1 cut(s)	644
BsaJI	CCNNGG	2 cut(s)	114, 130
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
BseCI	ATCGAT	1 cut(s)	408
BseDI	CCNNGG	2 cut(s)	114, 130
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	114
Bsh1236I	CGCG	1 cut(s)	39
Bsh1285I	CGRYCG	1 cut(s)	588
BshFI	GGCC	1 cut(s)	234
BshVI	ATCGAT	1 cut(s)	408
BsiEI	CGRYCG	1 cut(s)	588
BsiHKAI	GWGCWC	1 cut(s)	432
BsiSI	CCGG	3 cut(s)	132, 444, 539
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	2 cut(s)	9, 644
BsnI	GGCC	1 cut(s)	234
Bso31I	GGTCTC	1 cut(s)	644
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	7 cut(s)	73, 78, 222, 319, 405, 447, 681
Bsp19I	CCATGG	1 cut(s)	114
Bsp68I	TCGCGA	1 cut(s)	39
BspACI	CCGC	1 cut(s)	653
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	115
BspDI	ATCGAT	1 cut(s)	408
BspFNI	CGCG	1 cut(s)	39
BspMI	ACCTGC	1 cut(s)	543
BspPI	GGATC	6 cut(s)	73, 81, 217, 413, 455, 689
BspTNI	GGTCTC	1 cut(s)	644
BssECI	CCNNGG	2 cut(s)	114, 130
BssMI	GATC	7 cut(s)	73, 78, 222, 319, 405, 447, 681
BssT1I	CCWWGG	1 cut(s)	114
Bst4CI	ACNGT	3 cut(s)	488, 589, 635
BstC8I	GCNNGC	1 cut(s)	651
BstDEI	CTNAG	1 cut(s)	123
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	210
BstFNI	CGCG	1 cut(s)	39
BstKTI	GATC	7 cut(s)	76, 81, 225, 322, 408, 450, 684
BstMAI	GTCTC	2 cut(s)	9, 644
BstMBI	GATC	7 cut(s)	73, 78, 222, 319, 405, 447, 681
BstMCI	CGRYCG	1 cut(s)	588
BstMWI	GCNNNNNNNGC	2 cut(s)	364, 544
BstPAI	GACNNNNGTC	1 cut(s)	203
BstSCI	CCNGG	2 cut(s)	130, 443
BstUI	CGCG	1 cut(s)	39
BstV2I	GAAGAC	1 cut(s)	203
BstX2I	RGATCY	2 cut(s)	73, 681
BstYI	RGATCY	2 cut(s)	73, 681
Bsu15I	ATCGAT	1 cut(s)	408
BsuI	GTATCC	1 cut(s)	497
BsuRI	GGCC	1 cut(s)	234
BsuTUI	ATCGAT	1 cut(s)	408
BtgI	CCRYGG	1 cut(s)	114
BtrI	CACGTC	1 cut(s)	717
BtsCI	GGATG	1 cut(s)	210
BtsIMutI	CAGTG	3 cut(s)	120, 276, 493
BtuMI	TCGCGA	1 cut(s)	39
BveI	ACCTGC	1 cut(s)	543
Cac8I	GCNNGC	1 cut(s)	651
Cfr13I	GGNCC	1 cut(s)	758
ClaI	ATCGAT	1 cut(s)	408
Csp6I	GTAC	3 cut(s)	493, 592, 723
CviAII	CATG	1 cut(s)	115
CviQI	GTAC	3 cut(s)	493, 592, 723
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	7 cut(s)	75, 80, 224, 321, 407, 449, 683
DpnII	GATC	7 cut(s)	73, 78, 222, 319, 405, 447, 681
Ecl136II	GAGCTC	1 cut(s)	430
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	432
Eco31I	GGTCTC	1 cut(s)	644
Eco32I	GATATC	1 cut(s)	334
Eco47I	GGWCC	1 cut(s)	758
Eco53kI	GAGCTC	1 cut(s)	430
EcoICRI	GAGCTC	1 cut(s)	430
EcoRI	GAATTC	1 cut(s)	314
EcoRV	GATATC	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	1 cut(s)	118
FaiI	YATR	2 cut(s)	116, 789
FatI	CATG	1 cut(s)	114
FblI	GTMKAC	1 cut(s)	93
FokI	GGATG	1 cut(s)	197
FriOI	GRGCYC	1 cut(s)	432
FspBI	CTAG	2 cut(s)	398, 823
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	3 cut(s)	132, 444, 539
Hin1II	CATG	1 cut(s)	118
HincII	GTYRAC	2 cut(s)	94, 208
HindII	GTYRAC	2 cut(s)	94, 208
HindIII	AAGCTT	1 cut(s)	647
HinfI	GANTC	7 cut(s)	23, 28, 326, 347, 410, 420, 542
HpaII	CCGG	3 cut(s)	132, 444, 539
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	4 cut(s)	94, 208, 592, 710
Hpy188III	TCNNGA	8 cut(s)	38, 46, 62, 217, 323, 344, 454, 520
Hpy8I	GTNNAC	4 cut(s)	94, 208, 592, 710
Hpy99I	CGWCG	4 cut(s)	95, 98, 113, 143
HpyAV	CCTTC	2 cut(s)	68, 638
HpyCH4III	ACNGT	3 cut(s)	488, 589, 635
HpyCH4IV	ACGT	5 cut(s)	108, 204, 465, 573, 716
HpyCH4V	TGCA	4 cut(s)	291, 469, 621, 766
HpyF10VI	GCNNNNNNNGC	2 cut(s)	364, 544
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	5 cut(s)	108, 204, 465, 573, 716
Hsp92II	CATG	1 cut(s)	118
Kzo9I	GATC	7 cut(s)	73, 78, 222, 319, 405, 447, 681
LweI	GCATC	3 cut(s)	144, 300, 384
MaeI	CTAG	2 cut(s)	398, 823
MaeII	ACGT	5 cut(s)	108, 204, 465, 573, 716
MaeIII	GTNAC	2 cut(s)	475, 686
MalI	GATC	7 cut(s)	75, 80, 224, 321, 407, 449, 683
MboI	GATC	7 cut(s)	73, 78, 222, 319, 405, 447, 681
MboII	GAAGA	5 cut(s)	77, 208, 328, 550, 742
MflI	RGATCY	2 cut(s)	73, 681
MhlI	GDGCHC	1 cut(s)	432
MluCI	AATT	5 cut(s)	33, 299, 304, 314, 745
MmeI	TCCRAC	4 cut(s)	133, 169, 192, 608
MnlI	CCTC	4 cut(s)	224, 245, 272, 451
MroXI	GAANNNNTTC	1 cut(s)	749
MseI	TTAA	2 cut(s)	434, 600
MspI	CCGG	3 cut(s)	132, 444, 539
MspR9I	CCNGG	2 cut(s)	132, 445
MvnI	CGCG	1 cut(s)	39
MwoI	GCNNNNNNNGC	2 cut(s)	364, 544
NciI	CCSGG	2 cut(s)	132, 445
NcoI	CCATGG	1 cut(s)	114
NdeII	GATC	7 cut(s)	73, 78, 222, 319, 405, 447, 681
NlaIII	CATG	1 cut(s)	118
NmuCI	GTSAC	1 cut(s)	686
NruI	TCGCGA	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	2 cut(s)	351, 456
PdmI	GAANNNNTTC	1 cut(s)	749
PfeI	GAWTC	7 cut(s)	23, 28, 326, 347, 410, 420, 542
PfoI	TCCNGGA	1 cut(s)	443
PshAI	GACNNNNGTC	1 cut(s)	203
Psp124BI	GAGCTC	1 cut(s)	432
Psp1406I	AACGTT	1 cut(s)	573
PspPI	GGNCC	1 cut(s)	758
PsuI	RGATCY	2 cut(s)	73, 681
RruI	TCGCGA	1 cut(s)	39
RsaI	GTAC	3 cut(s)	494, 593, 724
RsaNI	GTAC	3 cut(s)	493, 592, 723
SacI	GAGCTC	1 cut(s)	432
SalI	GTCGAC	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	434, 600
Sau3AI	GATC	7 cut(s)	73, 78, 222, 319, 405, 447, 681
Sau96I	GGNCC	1 cut(s)	758
ScrFI	CCNGG	2 cut(s)	132, 445
SduI	GDGCHC	1 cut(s)	432
SfaNI	GCATC	3 cut(s)	144, 300, 384
SgrDI	CGTCGACG	1 cut(s)	92
SinI	GGWCC	1 cut(s)	758
SmlI	CTYRAG	3 cut(s)	215, 362, 737
SmoI	CTYRAG	3 cut(s)	215, 362, 737
Sse9I	AATT	5 cut(s)	33, 299, 304, 314, 745
SsiI	CCGC	1 cut(s)	653
SspI	AATATT	1 cut(s)	773
SspMI	CTAG	2 cut(s)	398, 823
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	2 cut(s)	130, 443
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	3 cut(s)	488, 589, 635
TaiI	ACGT	5 cut(s)	111, 207, 468, 576, 719
TaqI	TCGA	8 cut(s)	26, 93, 318, 324, 345, 354, 378, 408
TasI	AATT	5 cut(s)	33, 299, 304, 314, 745
TatI	WGTACW	1 cut(s)	722
TfiI	GAWTC	7 cut(s)	23, 28, 326, 347, 410, 420, 542
Tru1I	TTAA	2 cut(s)	434, 600
Tru9I	TTAA	2 cut(s)	434, 600
TscAI	CASTG	3 cut(s)	127, 283, 493
TseFI	GTSAC	1 cut(s)	686
Tsp45I	GTSAC	1 cut(s)	686
TspDTI	ATGAA	2 cut(s)	264, 626
TspGWI	ACGGA	1 cut(s)	750
TspRI	CASTG	3 cut(s)	127, 283, 493
VpaK11BI	GGWCC	1 cut(s)	758
XapI	RAATTY	3 cut(s)	33, 314, 745
XmiI	GTMKAC	1 cut(s)	93
XmnI	GAANNNNTTC	1 cut(s)	749
XspI	CTAG	2 cut(s)	398, 823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.