Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012715

Physical Location & Seq

Genomic Coordinates Reverse (-)

13640594 .. 13642060

Gene Structure 1467 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G32070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTCACTGTTTCTAAAAGACGATTCGATTCAAATCCGTGAAGTATGGAACGACAATCTCGAATCAGAGATGGCTCTGATTCGAGAAGTCGTAGACGATTTCCCATTCGTAGCGATGGACACAGAGTTCCCAGGAATCGTGTGTAGACCAGTGGGAACATTCAAAACCAACACAGAGTACCACTACGAAACTCTCAAAACAAACGTCAACATACTCAAGATGATTCAGCTTGGACTCACTTTCTCTGATGAGAAAGGTAACCTCCCAACTTGTGGAACAGACAACAAGTATTGCATCTGGCAGTTCAATTTCCGCGAATTCGACCTCGAATCCGATATCTACGCTACCGATTCGATCGAGCTTCTTCGTCAATCAGGCATCGATTTCGTGAAAAACAACGAATTCGGTATCGATTCGAAGCGGTTCGCTGAGCTTTTGATGTCTTCAGGGATTGTGTTGAATGAAAACGTTCATTGGGTTACATTCCACAGCGGATACGATTTCGGTTACTTGTTGAAGCTATTGACTTGTCAGAATCTTCCCGAGACGCAAACAGGGTTCTTCGAGATGATCAGTGTGTATTTCCCGAGGGTTTATGATATCAAACACTTGATGAAGTTCTGTAATAGTCTTCATGGAGGTCTGAATAAATTGGCGGAGCTGCTTGATGTTGAGAGAGTTGGGATTTGTCACCAGGCCGGATCGGATAGCTTGTTAACGTCGTGTACATTCAGGAAGCTGCAGGAGAATTTCTTCATTGGTTCAATGGAGAAGTATTCTGGTGTTTTGTATGGTTTAGGTGTTGAGAATGGTCAGATTGTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000288 GO:0000291 GO:0000932 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004535 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017148 GO:0019222 GO:0019439 GO:0030014 GO:0030015 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032991 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

275

Amino Acids

31.54

Weight (kDa)

4.84

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CAF1	PF04857	15 - 137	6.1e-13	CAF1 family ribonuclease
CAF1	PF04857	158 - 243	4.9e-06	CAF1 family ribonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80780 AT1G80780 AT1G80780 AT2G32070
fragaria_vesca	FvH4_6g28750
malus_domestica	MD17G1222200.v1.1
prunus_persica	Prupe.3G097100_v2.0.a1
pyrus_communis	pycom09g14370 pycom17g22590
rosa_chinensis	RchiOBHm_Chr2g0133151
rosa_laevigata	RLG00000019312
rosa_roxburghii	Rroxscaffold_2G00111360
rosa_rugosa	Rorug02G0310300
rosa_samantha	Rh2AG362600 Rh2BG368200 Rh2CG345800 Rh2DG385500
rosa_wichuraiana	Rw2G029480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	272
AccI	GTMKAC	2 cut(s)	93, 145
AccII	CGCG	1 cut(s)	315
AciI	CCGC	4 cut(s)	313, 421, 492, 656
AclI	AACGTT	1 cut(s)	468
AclWI	GGATC	1 cut(s)	709
AcsI	RAATTY	3 cut(s)	317, 401, 748
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	2 cut(s)	179, 727
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	6 cut(s)	32, 163, 307, 460, 517, 765
AjnI	CCWGG	2 cut(s)	130, 693
AloI	GAACNNNNNNTCC	2 cut(s)	110, 142
AluBI	AGCT	7 cut(s)	229, 361, 433, 520, 661, 711, 739
AluI	AGCT	7 cut(s)	229, 361, 433, 520, 661, 711, 739
Alw26I	GTCTC	1 cut(s)	539
AlwI	GGATC	1 cut(s)	709
Ama87I	CYCGRG	2 cut(s)	542, 586
AoxI	GGCC	1 cut(s)	696
ApeKI	GCWGC	2 cut(s)	661, 739
ApoI	RAATTY	3 cut(s)	317, 401, 748
ArsI	GACNNNNNNTTYG	2 cut(s)	189, 221
Asp700I	GAANNNNTTC	3 cut(s)	422, 468, 752
AsuHPI	GGTGA	1 cut(s)	683
AsuII	TTCGAA	1 cut(s)	416
AvaI	CYCGRG	2 cut(s)	542, 586
BbsI	GAAGAC	2 cut(s)	435, 623
BbvI	GCAGC	2 cut(s)	648, 726
BccI	CCATC	2 cut(s)	64, 109
BcgI	CGANNNNNNTGC	2 cut(s)	367, 401
BciT130I	CCWGG	2 cut(s)	132, 695
BciVI	GTATCC	1 cut(s)	488
BclI	TGATCA	1 cut(s)	570
BcoDI	GTCTC	1 cut(s)	539
BfmI	CTRYAG	1 cut(s)	740
BfuI	GTATCC	1 cut(s)	488
BisI	GCNGC	2 cut(s)	662, 740
BlpI	GCTNAGC	1 cut(s)	429
BlsI	GCNGC	2 cut(s)	663, 741
Bme1390I	CCNGG	2 cut(s)	132, 695
BmeT110I	CYCGRG	2 cut(s)	542, 586
BmrFI	CCNGG	2 cut(s)	132, 695
BmsI	GCATC	2 cut(s)	303, 387
BpiI	GAAGAC	2 cut(s)	435, 623
Bpu1102I	GCTNAGC	1 cut(s)	429
Bpu14I	TTCGAA	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	200
Bsa29I	ATCGAT	2 cut(s)	381, 411
BsaBI	GATNNNNATC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	130, 587
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	149
Bse8I	GATNNNNATC	1 cut(s)	32
BseBI	CCWGG	2 cut(s)	132, 695
BseCI	ATCGAT	2 cut(s)	381, 411
BseDI	CCNNGG	2 cut(s)	130, 587
BseJI	GATNNNNATC	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	1 cut(s)	149
BseXI	GCAGC	2 cut(s)	648, 726
Bsh1236I	CGCG	1 cut(s)	315
Bsh1285I	CGRYCG	1 cut(s)	357
BshFI	GGCC	1 cut(s)	698
BshVI	ATCGAT	2 cut(s)	381, 411
BsiEI	CGRYCG	1 cut(s)	357
BsiHKCI	CYCGRG	2 cut(s)	542, 586
BsiSI	CCGG	1 cut(s)	699
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	539
BsmBI	CGTCTC	1 cut(s)	539
BsnI	GGCC	1 cut(s)	698
BsoBI	CYCGRG	2 cut(s)	542, 586
Bsp119I	TTCGAA	1 cut(s)	416
Bsp1407I	TGTACA	1 cut(s)	725
Bsp143I	GATC	3 cut(s)	354, 570, 701
Bsp1720I	GCTNAGC	1 cut(s)	429
BspACI	CCGC	4 cut(s)	313, 421, 492, 656
BspANI	GGCC	1 cut(s)	698
BspCNI	CTCAG	1 cut(s)	421
BspDI	ATCGAT	2 cut(s)	381, 411
BspFNI	CGCG	1 cut(s)	315
BspMAI	CTGCAG	1 cut(s)	744
BspPI	GGATC	1 cut(s)	709
BspT104I	TTCGAA	1 cut(s)	416
BsrGI	TGTACA	1 cut(s)	725
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	2 cut(s)	130, 587
BssMI	GATC	3 cut(s)	354, 570, 701
Bst2UI	CCWGG	2 cut(s)	132, 695
Bst4CI	ACNGT	1 cut(s)	9
BstAUI	TGTACA	1 cut(s)	725
BstBI	TTCGAA	1 cut(s)	416
BstDEI	CTNAG	1 cut(s)	429
BstEII	GGTNACC	1 cut(s)	257
BstFNI	CGCG	1 cut(s)	315
BstKTI	GATC	3 cut(s)	357, 573, 704
BstMAI	GTCTC	1 cut(s)	539
BstMBI	GATC	3 cut(s)	354, 570, 701
BstMCI	CGRYCG	1 cut(s)	357
BstNI	CCWGG	2 cut(s)	132, 695
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	2 cut(s)	130, 693
BstSFI	CTRYAG	1 cut(s)	740
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	2 cut(s)	648, 726
BstV2I	GAAGAC	2 cut(s)	435, 623
Bsu15I	ATCGAT	2 cut(s)	381, 411
BsuI	GTATCC	1 cut(s)	488
BsuRI	GGCC	1 cut(s)	698
BsuTUI	ATCGAT	2 cut(s)	381, 411
BtgZI	GCGATG	1 cut(s)	128
BtsIMutI	CAGTG	3 cut(s)	5, 156, 580
ClaI	ATCGAT	2 cut(s)	381, 411
CseI	GACGC	1 cut(s)	556
Csp6I	GTAC	2 cut(s)	178, 726
CviAII	CATG	1 cut(s)	635
CviJI	RGCY	9 cut(s)	74, 229, 361, 433, 520, 661, 698, 711, 739
CviKI_1	RGCY	9 cut(s)	74, 229, 361, 433, 520, 661, 698, 711, 739
CviQI	GTAC	2 cut(s)	178, 726
DdeI	CTNAG	1 cut(s)	429
DpnI	GATC	3 cut(s)	356, 572, 703
DpnII	GATC	3 cut(s)	354, 570, 701
EciI	GGCGGA	1 cut(s)	671
Eco32I	GATATC	2 cut(s)	337, 601
Eco57I	CTGAAG	1 cut(s)	429
Eco88I	CYCGRG	2 cut(s)	542, 586
Eco91I	GGTNACC	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	257
EcoRI	GAATTC	2 cut(s)	317, 401
EcoRII	CCWGG	2 cut(s)	130, 693
EcoRV	GATATC	2 cut(s)	337, 601
Esp3I	CGTCTC	1 cut(s)	539
FaeI	CATG	1 cut(s)	638
FaiI	YATR	5 cut(s)	46, 212, 597, 636, 792
FatI	CATG	1 cut(s)	634
FbaI	TGATCA	1 cut(s)	570
FblI	GTMKAC	2 cut(s)	93, 145
Fnu4HI	GCNGC	2 cut(s)	662, 740
Fsp4HI	GCNGC	2 cut(s)	662, 740
GluI	GCNGC	2 cut(s)	662, 740
HaeIII	GGCC	1 cut(s)	698
HapII	CCGG	1 cut(s)	699
HgaI	GACGC	1 cut(s)	556
Hin1II	CATG	1 cut(s)	638
HincII	GTYRAC	2 cut(s)	208, 717
HindII	GTYRAC	2 cut(s)	208, 717
HpaI	GTTAAC	1 cut(s)	717
HpaII	CCGG	1 cut(s)	699
HphI	GGTGA	1 cut(s)	683
Hpy166II	GTNNAC	5 cut(s)	94, 146, 208, 717, 726
Hpy188I	TCNGA	8 cut(s)	67, 78, 247, 334, 534, 645, 706, 816
Hpy188III	TCNNGA	8 cut(s)	59, 83, 217, 388, 542, 565, 586, 733
Hpy8I	GTNNAC	5 cut(s)	94, 146, 208, 717, 726
Hpy99I	CGWCG	1 cut(s)	724
HpyCH4III	ACNGT	1 cut(s)	9
HpyCH4IV	ACGT	3 cut(s)	204, 468, 719
HpyCH4V	TGCA	2 cut(s)	294, 742
HpyF3I	CTNAG	1 cut(s)	429
HpySE526I	ACGT	3 cut(s)	204, 468, 719
Hsp92II	CATG	1 cut(s)	638
Ksp22I	TGATCA	1 cut(s)	570
KspAI	GTTAAC	1 cut(s)	717
Kzo9I	GATC	3 cut(s)	354, 570, 701
LmnI	GCTCC	1 cut(s)	658
Lsp1109I	GCAGC	2 cut(s)	648, 726
LweI	GCATC	2 cut(s)	303, 387
MaeII	ACGT	3 cut(s)	204, 468, 719
MaeIII	GTNAC	5 cut(s)	3, 257, 478, 506, 689
MalI	GATC	3 cut(s)	356, 572, 703
MboI	GATC	3 cut(s)	354, 570, 701
MboII	GAAGA	6 cut(s)	356, 435, 530, 553, 623, 745
MluCI	AATT	5 cut(s)	307, 317, 401, 650, 748
MlyI	GAGTC	1 cut(s)	228
MnlI	CCTC	4 cut(s)	272, 335, 582, 632
MroXI	GAANNNNTTC	3 cut(s)	422, 468, 752
MseI	TTAA	1 cut(s)	716
MspA1I	CMGCKG	1 cut(s)	492
MspI	CCGG	1 cut(s)	699
MspR9I	CCNGG	2 cut(s)	132, 695
MvaI	CCWGG	2 cut(s)	132, 695
MvnI	CGCG	1 cut(s)	315
NdeII	GATC	3 cut(s)	354, 570, 701
NlaIII	CATG	1 cut(s)	638
NmuCI	GTSAC	2 cut(s)	3, 689
NspV	TTCGAA	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PdmI	GAANNNNTTC	3 cut(s)	422, 468, 752
PflMI	CCANNNNNTGG	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	663, 741
Ple19I	CGATCG	1 cut(s)	357
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
Psp1406I	AACGTT	1 cut(s)	468
Psp6I	CCWGG	2 cut(s)	130, 693
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	2 cut(s)	130, 693
PstI	CTGCAG	1 cut(s)	744
PvuI	CGATCG	1 cut(s)	357
RsaI	GTAC	2 cut(s)	179, 727
RsaNI	GTAC	2 cut(s)	178, 726
SaqAI	TTAA	1 cut(s)	716
SatI	GCNGC	2 cut(s)	662, 740
Sau3AI	GATC	3 cut(s)	354, 570, 701
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	2 cut(s)	132, 695
SfaNI	GCATC	2 cut(s)	303, 387
SfcI	CTRYAG	1 cut(s)	740
SfuI	TTCGAA	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	5 cut(s)	307, 317, 401, 650, 748
SsiI	CCGC	4 cut(s)	313, 421, 492, 656
StyD4I	CCNGG	2 cut(s)	130, 693
TaaI	ACNGT	1 cut(s)	9
TaiI	ACGT	3 cut(s)	207, 471, 722
TasI	AATT	5 cut(s)	307, 317, 401, 650, 748
TatI	WGTACW	1 cut(s)	725
Tru1I	TTAA	1 cut(s)	716
Tru9I	TTAA	1 cut(s)	716
TscAI	CASTG	3 cut(s)	12, 156, 580
TseFI	GTSAC	2 cut(s)	3, 689
TseI	GCWGC	2 cut(s)	661, 739
Tsp45I	GTSAC	2 cut(s)	3, 689
TspDTI	ATGAA	6 cut(s)	461, 477, 623, 629, 745, 812
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	3 cut(s)	12, 156, 580
Van91I	CCANNNNNTGG	1 cut(s)	272
XapI	RAATTY	3 cut(s)	317, 401, 748
XmiI	GTMKAC	2 cut(s)	93, 145
XmnI	GAANNNNTTC	3 cut(s)	422, 468, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.