Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0012715

Physical Location & Seq

Genomic Coordinates Forward (+)

7336408 .. 7337354

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G097100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGAAGCTCTTACCGAAGCCCGATTCGATTCAAATTCGTGAGGTGTGGAACGATAATTTTGAGGAGGAATTTGCTTTGATACGAAAAATTGTCGATGACTATCCGTATGTTGCTATGGACACCGAGTTTCCTGGCATTGTTCTTCGTCCGGTGGGCAATTTCAAGAACAGCTATGACTACCATTACCAAACCTTGAAGGATAATGTAGATATGCTCAAGCTGATTCAACTGGGTCTCACATTTTCTGATGAGCAAGGGAATTTGCCCACTTGTGGAACTGATAAACACTGCATTTGGCAGTTTAATTTCCGGGAATTCAATCTCAATGAGGATGTTTTTGCCAATGATTCTATTGAGCTTTTGCGCCAAAGTGGCATTGATTTTAAGAAAAACAATGAAAAGGGTATTGATGCGAAGCGGTTTGGCGAGCTCTTAATGTCGTCTGGGATTGTGTTGAATGATACTGTGCATTGGGTCACTTTCCATAGTGGATATGATTTTGGATACTTGCTTAAGCTTTTGACTTGCCAGAACTTGCCCGAGACGCAAGCAGAGTTCTTTAATTTGATCAATATTTACTTTCCGACAATATACGATATCAAGCATCTGATGAAGTTTTGCAATAGCCTTCATGGTGGATTGAACAAGCTCGCAGAATTGTTGGAAGTGGAGAGAGTTGGTATTTGTCATCAGGCAGGTTCTGATAGTTTGCTTACGTCTTGTACGTTCAGAAAATTGAAAGAGAGTTTCTTTAGTGGTTCTTTGGAGAAGTATGCTGGTGTCTTGTATGGTTTAGGTGTTGAGAATGTACTAAATACTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000288 GO:0000291 GO:0000932 GO:0000956 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004535 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0017148 GO:0019222 GO:0019439 GO:0030014 GO:0030015 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032268 GO:0032269 GO:0032991 GO:0034248 GO:0034249 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1990904 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CAF1

Protein Analysis

275

Amino Acids

31.49

Weight (kDa)

5.11

Isoelectric Point (pI)

28.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80780 AT1G80780 AT1G80780 AT2G32070
fragaria_vesca	FvH4_6g28750
malus_domestica	MD17G1222200.v1.1
prunus_persica	Prupe.3G097100_v2.0.a1
pyrus_communis	pycom09g14370 pycom17g22590
rosa_chinensis	RchiOBHm_Chr2g0133151
rosa_laevigata	RLG00000019312
rosa_roxburghii	Rroxscaffold_2G00111360
rosa_rugosa	Rorug02G0310300
rosa_samantha	Rh2AG362600 Rh2BG368200 Rh2CG345800 Rh2DG385500
rosa_wichuraiana	Rw2G029480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	686
AciI	CCGC	1 cut(s)	418
AcsI	RAATTY	4 cut(s)	33, 68, 259, 314
AfaI	GTAC	2 cut(s)	724, 810
AfiI	CCNNNNNNNGG	1 cut(s)	272
AflII	CTTAAG	1 cut(s)	512
AgsI	TTSAA	8 cut(s)	32, 163, 196, 227, 319, 457, 643, 739
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	7 cut(s)	7, 171, 220, 358, 430, 517, 649
AluI	AGCT	7 cut(s)	7, 171, 220, 358, 430, 517, 649
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	2 cut(s)	239, 536
AlwNI	CAGNNNCTG	1 cut(s)	701
Ama87I	CYCGRG	1 cut(s)	539
ApoI	RAATTY	4 cut(s)	33, 68, 259, 314
AspLEI	GCGC	1 cut(s)	366
AsuC2I	CCSGG	1 cut(s)	311
AvaI	CYCGRG	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	432
BciT130I	CCWGG	1 cut(s)	132
BciVI	GTATCC	1 cut(s)	497
BclI	TGATCA	1 cut(s)	567
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	2 cut(s)	239, 536
BfrI	CTTAAG	1 cut(s)	512
BfuAI	ACCTGC	1 cut(s)	686
BfuI	GTATCC	1 cut(s)	497
BglI	GCCNNNNNGGC	1 cut(s)	372
Bme1390I	CCNGG	2 cut(s)	132, 311
BmeT110I	CYCGRG	1 cut(s)	539
BmrFI	CCNGG	2 cut(s)	132, 311
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	2 cut(s)	400, 613
BmuI	ACTGGG	1 cut(s)	239
BpuEI	CTTGAG	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	311
BsaBI	GATNNNNATC	1 cut(s)	99
BsaI	GGTCTC	1 cut(s)	239
BsaWI	WCCGGW	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	234
Bse8I	GATNNNNATC	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	337
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseNI	ACTGG	1 cut(s)	234
BseRI	GAGGAG	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	432
BsiHKCI	CYCGRG	1 cut(s)	539
BsiSI	CCGG	2 cut(s)	149, 310
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	2 cut(s)	239, 536
BsmBI	CGTCTC	1 cut(s)	536
Bso31I	GGTCTC	1 cut(s)	239
BsoBI	CYCGRG	1 cut(s)	539
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp143I	GATC	1 cut(s)	567
BspACI	CCGC	1 cut(s)	418
BspMI	ACCTGC	1 cut(s)	686
BspTI	CTTAAG	1 cut(s)	512
BspTNI	GGTCTC	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	234
BssMI	GATC	1 cut(s)	567
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	466
BstAFI	CTTAAG	1 cut(s)	512
BstC8I	GCNNGC	3 cut(s)	428, 549, 651
BstF5I	GGATG	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	1 cut(s)	570
BstMAI	GTCTC	2 cut(s)	239, 536
BstMBI	GATC	1 cut(s)	567
BstMWI	GCNNNNNNNGC	2 cut(s)	372, 544
BstNI	CCWGG	1 cut(s)	132
BstSCI	CCNGG	2 cut(s)	130, 309
BsuI	GTATCC	1 cut(s)	497
BtsCI	GGATG	1 cut(s)	337
BtsI	GCAGTG	1 cut(s)	286
BtsIMutI	CAGTG	1 cut(s)	286
BveI	ACCTGC	1 cut(s)	686
Cac8I	GCNNGC	3 cut(s)	428, 549, 651
CaiI	CAGNNNCTG	1 cut(s)	701
CfoI	GCGC	1 cut(s)	366
CseI	GACGC	1 cut(s)	553
Csp6I	GTAC	2 cut(s)	723, 809
CviAII	CATG	1 cut(s)	632
CviJI	RGCY	9 cut(s)	7, 19, 171, 220, 358, 430, 517, 627, 649
CviKI_1	RGCY	9 cut(s)	7, 19, 171, 220, 358, 430, 517, 627, 649
CviQI	GTAC	2 cut(s)	723, 809
DpnI	GATC	1 cut(s)	569
DpnII	GATC	1 cut(s)	567
Ecl136II	GAGCTC	1 cut(s)	430
Eco24I	GRGCYC	1 cut(s)	432
Eco31I	GGTCTC	1 cut(s)	239
Eco32I	GATATC	1 cut(s)	598
Eco53kI	GAGCTC	1 cut(s)	430
Eco88I	CYCGRG	1 cut(s)	539
EcoICRI	GAGCTC	1 cut(s)	430
EcoRI	GAATTC	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	130
EcoRV	GATATC	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	536
FaeI	CATG	1 cut(s)	635
FatI	CATG	1 cut(s)	631
FbaI	TGATCA	1 cut(s)	567
FokI	GGATG	1 cut(s)	344
FriOI	GRGCYC	1 cut(s)	432
GlaI	GCGC	1 cut(s)	365
HapII	CCGG	2 cut(s)	149, 310
HgaI	GACGC	1 cut(s)	553
HhaI	GCGC	1 cut(s)	366
Hin1II	CATG	1 cut(s)	635
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	4 cut(s)	23, 28, 223, 347
HpaII	CCGG	2 cut(s)	149, 310
Hpy188I	TCNGA	5 cut(s)	247, 585, 609, 703, 731
Hpy188III	TCNNGA	2 cut(s)	38, 163
HpyAV	CCTTC	2 cut(s)	190, 638
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4IV	ACGT	2 cut(s)	716, 725
HpyCH4V	TGCA	3 cut(s)	291, 469, 621
HpyF10VI	GCNNNNNNNGC	2 cut(s)	372, 544
HpySE526I	ACGT	2 cut(s)	716, 725
Hsp92II	CATG	1 cut(s)	635
HspAI	GCGC	1 cut(s)	364
Ksp22I	TGATCA	1 cut(s)	567
Kzo9I	GATC	1 cut(s)	567
LweI	GCATC	2 cut(s)	400, 613
MaeII	ACGT	2 cut(s)	716, 725
MaeIII	GTNAC	1 cut(s)	475
MalI	GATC	1 cut(s)	569
MboI	GATC	1 cut(s)	567
MboII	GAAGA	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	432
MmeI	TCCRAC	2 cut(s)	608, 642
MnlI	CCTC	4 cut(s)	34, 55, 58, 322
MseI	TTAA	6 cut(s)	303, 384, 434, 513, 561, 823
MspCI	CTTAAG	1 cut(s)	512
MspI	CCGG	2 cut(s)	149, 310
MspR9I	CCNGG	2 cut(s)	132, 311
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	372, 544
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	1 cut(s)	567
NlaIII	CATG	1 cut(s)	635
NmuCI	GTSAC	1 cut(s)	475
PcsI	WCGNNNNNNNCGW	1 cut(s)	722
PfeI	GAWTC	4 cut(s)	23, 28, 223, 347
PfoI	TCCNGGA	1 cut(s)	309
Psp124BI	GAGCTC	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PstNI	CAGNNNCTG	1 cut(s)	701
RsaI	GTAC	2 cut(s)	724, 810
RsaNI	GTAC	2 cut(s)	723, 809
SacI	GAGCTC	1 cut(s)	432
SaqAI	TTAA	6 cut(s)	303, 384, 434, 513, 561, 823
Sau3AI	GATC	1 cut(s)	567
ScrFI	CCNGG	2 cut(s)	132, 311
SduI	GDGCHC	1 cut(s)	432
SfaNI	GCATC	2 cut(s)	400, 613
SmlI	CTYRAG	2 cut(s)	215, 512
SmoI	CTYRAG	2 cut(s)	215, 512
SsiI	CCGC	1 cut(s)	418
SspI	AATATT	1 cut(s)	574
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	2 cut(s)	130, 309
TaaI	ACNGT	1 cut(s)	466
TaiI	ACGT	2 cut(s)	719, 728
TaqI	TCGA	2 cut(s)	26, 93
TatI	WGTACW	1 cut(s)	808
TfiI	GAWTC	4 cut(s)	23, 28, 223, 347
Tru1I	TTAA	6 cut(s)	303, 384, 434, 513, 561, 823
Tru9I	TTAA	6 cut(s)	303, 384, 434, 513, 561, 823
TscAI	CASTG	1 cut(s)	293
TseFI	GTSAC	1 cut(s)	475
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	4 cut(s)	17, 411, 620, 626
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	1 cut(s)	293
Vha464I	CTTAAG	1 cut(s)	512
XapI	RAATTY	4 cut(s)	33, 68, 259, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.