AT2G01379

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
171098 .. 171472
375 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G01379.1

Sequence Viewer

Length: 246 bp
ATGAGGATCATGTGGAAATTCATTATAGTGATGTTGTGTTTTATAGCTTTGGTGGGATCAAGAGGAACATCGGCAACGTCAAGGCTGAGAATGAAGAAGGAAGATATAGGTAGAAGGTTTGCTTTGCAGAATAAGCTCCAACGAGGTCCAGTTCCTCCTTCACAGCCTTCTCCATGTCACAACAAACTAAACCCTCTTTCTCATTCACAAGTTTATTCTTCCCACACTTATGTTACTTGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.21

Weight (kDa)

10.66

Isoelectric Point (pI)

63.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01379 AT2G25125
fragaria_vesca FvH4_4g32331
prunus_persica Prupe.1G324000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0441131
rosa_multiflora Rmu_sc0006317.1_g000019
rosa_roxburghii Rroxscaffold_5G00382100
rosa_rugosa Rorug04G0331400
rosa_samantha Rh4BG396900 Rh4CG411900 Rh4DG389800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 14, 64
AcsI RAATTY 1 cut(s) 17
AluBI AGCT 2 cut(s) 47, 136
AluI AGCT 2 cut(s) 47, 136
AlwI GGATC 2 cut(s) 14, 64
ApoI RAATTY 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 146
AvaII GGWCC 1 cut(s) 146
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 149
Bsp143I GATC 2 cut(s) 6, 56
BspCNI CTCAG 1 cut(s) 78
BspPI GGATC 2 cut(s) 14, 64
BsrI ACTGG 1 cut(s) 149
BssMI GATC 2 cut(s) 6, 56
BstDEI CTNAG 1 cut(s) 86
BstKTI GATC 2 cut(s) 9, 59
BstMBI GATC 2 cut(s) 6, 56
BstMWI GCNNNNNNNGC 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 146
CviAII CATG 2 cut(s) 10, 174
CviJI RGCY 4 cut(s) 47, 85, 136, 166
CviKI_1 RGCY 4 cut(s) 47, 85, 136, 166
DdeI CTNAG 1 cut(s) 86
DpnI GATC 2 cut(s) 8, 58
DpnII GATC 2 cut(s) 6, 56
Eco47I GGWCC 1 cut(s) 146
FaeI CATG 2 cut(s) 13, 177
FaiI YATR 6 cut(s) 11, 26, 44, 107, 175, 231
FalI AAGNNNNNCTT 2 cut(s) 106, 138
FatI CATG 2 cut(s) 9, 173
Hin1II CATG 2 cut(s) 13, 177
Hpy188III TCNNGA 1 cut(s) 60
HpyAV CCTTC 4 cut(s) 91, 108, 168, 177
HpyCH4IV ACGT 1 cut(s) 77
HpyCH4V TGCA 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 1 cut(s) 77
Hsp92II CATG 2 cut(s) 13, 177
Kzo9I GATC 2 cut(s) 6, 56
LmnI GCTCC 1 cut(s) 141
LpnPI CCDG 1 cut(s) 162
MaeII ACGT 1 cut(s) 77
MaeIII GTNAC 2 cut(s) 176, 232
MalI GATC 2 cut(s) 8, 58
MboI GATC 2 cut(s) 6, 56
MboII GAAGA 3 cut(s) 106, 113, 210
MluCI AATT 1 cut(s) 17
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 4 cut(s) 56, 137, 165, 204
MslI CAYNNNNRTG 2 cut(s) 26, 228
MwoI GCNNNNNNNGC 1 cut(s) 133
NdeII GATC 2 cut(s) 6, 56
NlaIII CATG 2 cut(s) 13, 177
NmuCI GTSAC 1 cut(s) 176
PspPI GGNCC 1 cut(s) 146
RseI CAYNNNNRTG 2 cut(s) 26, 228
Sau3AI GATC 2 cut(s) 6, 56
Sau96I GGNCC 1 cut(s) 146
SetI ASST 6 cut(s) 49, 80, 112, 119, 138, 148
SgeI CNNG 7 cut(s) 22, 72, 93, 155, 161, 186, 221
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 2 cut(s) 26, 228
Sse9I AATT 1 cut(s) 17
TaiI ACGT 1 cut(s) 80
TasI AATT 1 cut(s) 17
TseFI GTSAC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 2 cut(s) 10, 107
VpaK11BI GGWCC 1 cut(s) 146
XapI RAATTY 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.