FvH4_4g32331

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0017930
Physical Location & Seq
Forward (+)
31037251 .. 31038172
922 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g32331.t1

Sequence Viewer

Length: 375 bp
ATGAGGGCTATGGATATGGCAATATGCACCGGTAGGAATAGCAAACATGAGATGAGGCAAGCCGGCACCCCCGGCAACACCGCCGGAAGATTAATGCGCTGCCCTAACTTGGATATCACCATGTCGTCGTCATCATCTCCAAAGAGATTGTTAATGGTTTCTGTTATCTTTGTGCTTCTGCTTTTGGGAATGGCTTCAGTTGGAAGTTGCAGCAGGCCTTTGAAGAATTTGAAGGAAAAGGAAGTAGAAAGCTTGATGAAGGCTAAGCTTCCCAGAGGGCCAGTGCCTCCTTCAGGACCTTCTTTCTGTCATAACAAGCTCAGCCCCACCAAGAACACCCAGTCTTTTACTGAAGATTATATCATCTGCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.52

Weight (kDa)

9.77

Isoelectric Point (pI)

58.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01379 AT2G25125
fragaria_vesca FvH4_4g32331
prunus_persica Prupe.1G324000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0441131
rosa_multiflora Rmu_sc0006317.1_g000019
rosa_roxburghii Rroxscaffold_5G00382100
rosa_rugosa Rorug04G0331400
rosa_samantha Rh4BG396900 Rh4CG411900 Rh4DG389800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AciI CCGC 1 cut(s) 81
AcsI RAATTY 1 cut(s) 226
AcuI CTGAAG 3 cut(s) 180, 276, 372
AfiI CCNNNNNNNGG 2 cut(s) 109, 293
AgeI ACCGGT 1 cut(s) 29
AgsI TTSAA 2 cut(s) 223, 232
AluBI AGCT 3 cut(s) 252, 268, 319
AluI AGCT 3 cut(s) 252, 268, 319
AoxI GGCC 2 cut(s) 215, 278
ApeKI GCWGC 2 cut(s) 99, 210
ApoI RAATTY 1 cut(s) 226
AseI ATTAAT 1 cut(s) 92
AsiGI ACCGGT 1 cut(s) 29
Asp700I GAANNNNTTC 1 cut(s) 193
AspLEI GCGC 1 cut(s) 99
AspS9I GGNCC 2 cut(s) 278, 296
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 109
AvaII GGWCC 1 cut(s) 296
BanI GGYRCC 1 cut(s) 65
BbvI GCAGC 2 cut(s) 86, 222
BcnI CCSGG 1 cut(s) 72
BisI GCNGC 2 cut(s) 100, 211
BlpI GCTNAGC 2 cut(s) 264, 320
BlsI GCNGC 2 cut(s) 101, 212
Bme1390I CCNGG 1 cut(s) 72
Bme18I GGWCC 1 cut(s) 296
BmgT120I GGNCC 2 cut(s) 278, 296
BmiI GGNNCC 1 cut(s) 67
BmrFI CCNGG 1 cut(s) 72
BmrI ACTGGG 1 cut(s) 334
BmuI ACTGGG 1 cut(s) 334
Bpu1102I GCTNAGC 2 cut(s) 264, 320
BpuMI CCSGG 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 70
BsaWI WCCGGW 1 cut(s) 29
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 293
Bse118I RCCGGY 2 cut(s) 29, 62
Bse1I ACTGG 2 cut(s) 281, 340
BseDI CCNNGG 1 cut(s) 70
BseLI CCNNNNNNNGG 2 cut(s) 109, 293
BseMII CTCAG 1 cut(s) 334
BseNI ACTGG 2 cut(s) 281, 340
BseXI GCAGC 2 cut(s) 86, 222
BshFI GGCC 2 cut(s) 217, 280
BshNI GGYRCC 1 cut(s) 65
BshTI ACCGGT 1 cut(s) 29
BsiSI CCGG 4 cut(s) 30, 63, 72, 84
BslI CCNNNNNNNGG 2 cut(s) 109, 293
BsnI GGCC 2 cut(s) 217, 280
Bsp1720I GCTNAGC 2 cut(s) 264, 320
BspACI CCGC 1 cut(s) 81
BspANI GGCC 2 cut(s) 217, 280
BspCNI CTCAG 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 67
BspT107I GGYRCC 1 cut(s) 65
BsrFI RCCGGY 2 cut(s) 29, 62
BsrI ACTGG 2 cut(s) 281, 340
BssAI RCCGGY 2 cut(s) 29, 62
BssECI CCNNGG 1 cut(s) 70
BstC8I GCNNGC 3 cut(s) 60, 64, 215
BstDEI CTNAG 2 cut(s) 264, 320
BstENI CCTNNNNNAGG 1 cut(s) 291
BstHHI GCGC 1 cut(s) 99
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 86, 222
BsuRI GGCC 2 cut(s) 217, 280
BtsIMutI CAGTG 1 cut(s) 288
Cac8I GCNNGC 3 cut(s) 60, 64, 215
CfoI GCGC 1 cut(s) 99
Cfr10I RCCGGY 2 cut(s) 29, 62
Cfr13I GGNCC 2 cut(s) 278, 296
CspAI ACCGGT 1 cut(s) 29
CviAII CATG 3 cut(s) 47, 121, 372
DdeI CTNAG 2 cut(s) 264, 320
Eco147I AGGCCT 1 cut(s) 217
Eco32I GATATC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 296
Eco57I CTGAAG 3 cut(s) 180, 276, 372
EcoNI CCTNNNNNAGG 1 cut(s) 291
EcoO109I RGGNCCY 1 cut(s) 296
EcoRV GATATC 1 cut(s) 115
FaeI CATG 3 cut(s) 50, 124, 375
FaiI YATR 8 cut(s) 11, 17, 25, 48, 122, 312, 360, 373
FatI CATG 3 cut(s) 46, 120, 371
Fnu4HI GCNGC 2 cut(s) 100, 211
Fsp4HI GCNGC 2 cut(s) 100, 211
GlaI GCGC 1 cut(s) 98
GluI GCNGC 2 cut(s) 100, 211
HaeIII GGCC 2 cut(s) 217, 280
HapII CCGG 4 cut(s) 30, 63, 72, 84
HhaI GCGC 1 cut(s) 99
Hin1II CATG 3 cut(s) 50, 124, 375
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HindIII AAGCTT 2 cut(s) 250, 266
HpaII CCGG 4 cut(s) 30, 63, 72, 84
HphI GGTGA 1 cut(s) 109
Hpy188III TCNNGA 1 cut(s) 294
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 4 cut(s) 226, 253, 300, 309
HpyCH4V TGCA 2 cut(s) 27, 210
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpyF3I CTNAG 2 cut(s) 264, 320
Hsp92II CATG 3 cut(s) 50, 124, 375
HspAI GCGC 1 cut(s) 97
KroI GCCGGC 1 cut(s) 62
KroNI GCCGGC 1 cut(s) 64
LpnPI CCDG 9 cut(s) 43, 76, 85, 97, 199, 279, 286, 294, 353
Lsp1109I GCAGC 2 cut(s) 86, 222
MboII GAAGA 3 cut(s) 99, 235, 365
MluCI AATT 1 cut(s) 226
MmeI TCCRAC 1 cut(s) 181
MnlI CCTC 3 cut(s) 48, 269, 297
MroNI GCCGGC 1 cut(s) 62
MroXI GAANNNNTTC 1 cut(s) 193
MseI TTAA 2 cut(s) 92, 152
MspI CCGG 4 cut(s) 30, 63, 72, 84
MspR9I CCNGG 1 cut(s) 72
MwoI GCNNNNNNNGC 1 cut(s) 72
NaeI GCCGGC 1 cut(s) 64
NciI CCSGG 1 cut(s) 72
NgoMIV GCCGGC 1 cut(s) 62
NlaIII CATG 3 cut(s) 50, 124, 375
NlaIV GGNNCC 1 cut(s) 67
PceI AGGCCT 1 cut(s) 217
PdiI GCCGGC 1 cut(s) 64
PdmI GAANNNNTTC 1 cut(s) 193
PinAI ACCGGT 1 cut(s) 29
PkrI GCNGC 2 cut(s) 101, 212
PpuMI RGGWCCY 1 cut(s) 296
PshBI ATTAAT 1 cut(s) 92
Psp5II RGGWCCY 1 cut(s) 296
PspN4I GGNNCC 1 cut(s) 67
PspPI GGNCC 2 cut(s) 278, 296
PspPPI RGGWCCY 1 cut(s) 296
SaqAI TTAA 2 cut(s) 92, 152
SatI GCNGC 2 cut(s) 100, 211
Sau96I GGNCC 2 cut(s) 278, 296
ScrFI CCNGG 1 cut(s) 72
SetI ASST 4 cut(s) 254, 270, 301, 321
SinI GGWCC 1 cut(s) 296
Sse9I AATT 1 cut(s) 226
SseBI AGGCCT 1 cut(s) 217
SsiI CCGC 1 cut(s) 81
StuI AGGCCT 1 cut(s) 217
StyD4I CCNGG 1 cut(s) 70
TasI AATT 1 cut(s) 226
Tru1I TTAA 2 cut(s) 92, 152
Tru9I TTAA 2 cut(s) 92, 152
TscAI CASTG 1 cut(s) 288
TseI GCWGC 2 cut(s) 99, 210
TspDTI ATGAA 1 cut(s) 272
TspRI CASTG 1 cut(s) 288
VpaK11BI GGWCC 1 cut(s) 296
VspI ATTAAT 1 cut(s) 92
XagI CCTNNNNNAGG 1 cut(s) 291
XapI RAATTY 1 cut(s) 226
XmnI GAANNNNTTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.