Rorug04G0331400

L-type lectin-domain containing receptor kinase IX.1-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
50568262 .. 50575187
6926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0331400.1

Sequence Viewer

Length: 2781 bp
ATGGAGTCCGATTCAGACTCAGACGGCTCTCACATCTCGGCCACTCCGCCGCGGCCAAAGCCCACCCTTATCTCCAGACCTAGGTCCTCTCAATCCAACTCAAAAGCCAAAAAGCTCTTCTCCGAACCCCCGGCCCCCGCCAGACCCGACCCGTCTCCTCTTCTCTCCTCCGATTTACCTTTCCAGATACTCCGCCGCCCGCCCGGTCAAACCCTCGCTATCCCGACCGTCGATTCCTTCGTCACTCCCGGCTACTTCTCCAAATCGGCGCCGTCGTTCTCGAAAAACCGACGTGTCAGCATCGATTTCGATCCGGACACATACGACCAGCCGTCTACTTTCTCACCGCCGAATCCAAAGCCTCAGCCGGAGGCTGGTATCTCTGGATCTAACTATTCTGCCGCCGATTGGGTACCGCCGCCGCCGGAGCCCAAAGTTGAAGTTGCTAACAGGTCTGGGGTTTCAGCCAAAATTGTGAAGAAAAACGTCAATCTGATTCGAGGTAATGCTCCTTTGCCGCCGGTGAAGCTCAAAGGAGGAGCCGAAGGGAACTTTGTGAAGCTCAACCTGAACGGAAGGAAGCGCAAGTTTCTGAACAAGGGGAGAAGAGGAAGTACCAGTTCCTCAGGTCGTCGGAAATTTTACCGGAAAGGTAAAAGAAAATTGACAGCGCAAGATGGAAATGAAGGAGATGAAGATGGCTCGGTTACAGAGGCAATTGCAGAGCAACAGATTCGGAGCCAGGAGGACAGTAAAAGAGCCAAGAAATTCAACCTGGAAGCGTTTGAAGAGGCGGTTGCGGCGGCTCGGAGTGAGCCGTCGGATGAGAACTTGGTGAAGCTGTTGAGGCTGACATATGGCTATGATTCGTTCCGAGATGGGCAGCTGGAGGCAATCAAGATGGTGCTGGCCGGAGATTCGACCATGGTTGTTCTGCCGACGGGTGCCGGCAAGTCTTTGTGTTATCAGTTGCCTGCTGTGATTTTACCTGGGTTGACTTTGGTTGTTAGTCCATTGATTGCATTGATGATTGACCAGCTCAAGCAGCTTCCTCATATGATTCGTGGTGGTCTTCTTTGTAGTAGTCAGACACTGGAAGAAGTTTCCGGGACGATTAGGCTGGTTCAAGAAGGGGGCATAAAAGTGCTTTTCGTCTCCCCAGAGAGATTCTTGAATGGAGAATTCCTGTCTATATTTTCTGCCACTCCTATATCTCTTGTTGTGGTGGATGAAGCTCATTGTGTATCTGAATGGTCACACAATTTTCGGCCATCATACATGAGGCTCAGAGCTTCTATGCTTCGTGCGAAGCTCAATGTGAACTGCATTCTTGCAATGACAGCTACTGCCACAGCCACAACTTTGAGTTCTGTCATGTCAGCTTTAGAGATTCCTCCAAACAATCTCATTCAAAAAGCCAACCTAAGGGATAATTTACAACTATCAGTGTCATCAAGTGGAAATAGAATGAAAGATCTGCTGAAGTTGATCAAGTCTACTTCCTTTAAGGATGTTCAGAGCATCATTATCTACTGCAAATTTCAGTTTGAAACAGAAATGATAAGCAGATACTTATGTGACAACAATATCAATGCAAAGAGTTACCACAGTGGTATCCCTTCAAAAGATCGTACGCGTGTGCAGGAGTTATTTTTTACTAACAAAATTAGAGTGGTTGTTGCGACTGTGGCCTTTGGCATGGGCCTTGACAAGAGGGATATTGGCTCTGTGATTCATTACACCTTACCAGAAAGCTTGGAGGAATATGTTCAGGAAATCGGACGAGCTGGACGGGATGGAAGGTCATCCTATTGCCATCTTTATTTTGATGACAACACATATTACAAACTTCGAAGTCTTATGTATAGTGATGGAGTGGATGAATATGTGGTAAACAAATTCCTCTGCCAAGTATTCACCAGTGATGAGAACTTGAAGGGAAAAATTTATTCGTTGGTTAAAGAAACTGCATCCCGCAAGTTTGATATGAAAGAAGAGGTGATGCTCACAATTCTAACGCAGTTGGAGTTGGGTGAAGTGCAGTATTTGCATTTACTTCCAGAGATAAATGTAACATGCATTTTGAATTTTCATAAGACTTCCCCAGTTTTGCTTGCTGAAAAGGATGTTCTTATTGCAGCAATTCTGAAGAAGTCTGAGACTAAGCATGGACAATGTGTGTTTGACATACCGACTATAGCAAATAGCATTGGAGTTACAACTACCATCCTAACAAACCATTTACAGAATTTAAAGTTGAAAGGAGAAGTAACATATGAAGTGAAGGACCAAGCCTACTGTTATACAATTGTGGAGGTCCCTGCAGATCTTTGTTCTCTATCAGCACAGCTTACAAAATGGCTATCAGAGGTTGAAAGTTGTAAGGTGCGGAAGTTGGATGCAATGTTTAATGCGGCAGTCTCTGCTGTTAATAACTGTGAGAAGATGGAAGGTTGTTCTGATGCCCAGCAAACACTATGTTTGCAAAGGAAGATTTTGGAGTATTTCAGTGAAGATAATGTTGATGTCCCTAATAAGATGGGTAAAAGCAGCCCATTTTTGCAAGCAGATATAAAAGTCTTTCTACGGAGCAATTCACAGGCCAAATTCACCCCCAGAGCTGTTGCAAGGATCATGCATGGCATTCCAAGTCCAGCATATGCTTCTGCATTTTGGTCTAAAACTCACTTCTGGGGAAGATATACGCATATAGACTTCCAGGCGGTAATGGAAGCAGCAAAGGCGGAATTGATCAATTTTGTGAGGAAGGATGCAGTCTAG

Protein Analysis

926

Amino Acids

102.76

Weight (kDa)

8.98

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 293 - 454 2.8e-22 DEAD/DEAH box helicase
Helicase_C PF00271 490 - 600 2.5e-19 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10530 AT5G65600
fragaria_vesca FvH4_1g17770 FvH4_1g19171 FvH4_1g19180 FvH4_1g19922 FvH4_1g19923 FvH4_1g19940 FvH4_1g19950 FvH4_3g19030 FvH4_3g19040 FvH4_3g19350 FvH4_3g19361 FvH4_3g19370 FvH4_3g19372 FvH4_3g19390 FvH4_3g19390 FvH4_3g19400 FvH4_3g19400 FvH4_3g23100 FvH4_3g32500 FvH4_3g39140 FvH4_4g12891 FvH4_4g12900 FvH4_5g13890 FvH4_6g23490 FvH4_7g14930 FvH4_7g14950 FvH4_7g15082 FvH4_7g16980
malus_domestica MD01G1043400.v1.1 MD01G1043500.v1.1 MD03G1232800.v1.1 MD03G1232900.v1.1 MD03G1233000.v1.1 MD03G1233100.v1.1 MD03G1233200.v1.1 MD03G1233300.v1.1 MD03G1233600.v1.1 MD03G1233700.v1.1 MD03G1233900.v1.1 MD03G1234100.v1.1 MD03G1234300.v1.1 MD03G1234400.v1.1 MD03G1234500.v1.1 MD03G1234600.v1.1 MD08G1053200.v1.1 MD08G1053400.v1.1 MD08G1053500.v1.1 MD08G1053600.v1.1 MD08G1053800.v1.1 MD08G1053900.v1.1 MD08G1054000.v1.1 MD08G1054100.v1.1 MD08G1054200.v1.1 MD08G1054400.v1.1 MD08G1054600.v1.1 MD09G1175200.v1.1 MD09G1289800.v1.1 MD09G1289900.v1.1 MD11G1253600.v1.1 MD11G1254300.v1.1 MD11G1254500.v1.1 MD11G1254900.v1.1 MD11G1255100.v1.1 MD15G1042500.v1.1 MD15G1053100.v1.1 MD15G1053200.v1.1 MD15G1307500.v1.1
prunus_persica Prupe.1G157800_v2.0.a1 Prupe.1G395700_v2.0.a1 Prupe.4G174600_v2.0.a1 Prupe.4G174800_v2.0.a1 Prupe.4G174900_v2.0.a1 Prupe.4G175000_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175300_v2.0.a1 Prupe.4G175400_v2.0.a1 Prupe.4G175500_v2.0.a1 Prupe.4G175600_v2.0.a1 Prupe.4G175700_v2.0.a1 Prupe.4G241200_v2.0.a1 Prupe.6G208500_v2.0.a1 Prupe.6G208700_v2.0.a1 Prupe.6G208800_v2.0.a1 Prupe.8G117500_v2.0.a1 Prupe.I004200_v2.0.a1 Prupe.I004300_v2.0.a1
pyrus_communis pycom03g18010 pycom03g18050 pycom03g18070 pycom03g18100 pycom08g04440 pycom09g19760 pycom11g22500 pycom11g22510 pycom11g22520
rosa_chinensis RchiOBHm_Chr1g0318811 RchiOBHm_Chr1g0329471 RchiOBHm_Chr1g0340841 RchiOBHm_Chr1g0340931 RchiOBHm_Chr1g0356861 RchiOBHm_Chr1g0357251 RchiOBHm_Chr1g0357261 RchiOBHm_Chr1g0357321 RchiOBHm_Chr1g0360231 RchiOBHm_Chr1g0365521 RchiOBHm_Chr1g0365571 RchiOBHm_Chr1g0365581 RchiOBHm_Chr2g0108101 RchiOBHm_Chr2g0108131 RchiOBHm_Chr2g0108161 RchiOBHm_Chr2g0108191 RchiOBHm_Chr2g0108201 RchiOBHm_Chr2g0110211 RchiOBHm_Chr2g0110221 RchiOBHm_Chr2g0110261 RchiOBHm_Chr2g0110301 RchiOBHm_Chr2g0111801 RchiOBHm_Chr2g0111821 RchiOBHm_Chr2g0128081 RchiOBHm_Chr2g0151141 RchiOBHm_Chr3g0469441 RchiOBHm_Chr3g0481491 RchiOBHm_Chr4g0399611 RchiOBHm_Chr4g0414891 RchiOBHm_Chr5g0031941 RchiOBHm_Chr5g0032011 RchiOBHm_Chr5g0032051 RchiOBHm_Chr5g0032101 RchiOBHm_Chr5g0032421 RchiOBHm_Chr5g0032461 RchiOBHm_Chr5g0032481 RchiOBHm_Chr5g0032541 RchiOBHm_Chr5g0032571 RchiOBHm_Chr5g0032591 RchiOBHm_Chr5g0032631 RchiOBHm_Chr5g0037251 RchiOBHm_Chr5g0037271 RchiOBHm_Chr5g0037281 RchiOBHm_Chr5g0037291 RchiOBHm_Chr5g0040701 RchiOBHm_Chr5g0040731 RchiOBHm_Chr5g0059491 RchiOBHm_Chr6g0257841 RchiOBHm_Chr6g0274701 RchiOBHm_Chr7g0212711
rosa_laevigata RLG00000002585 RLG00000002586 RLG00000008111 RLG00000009258 RLG00000012123 RLG00000014148 RLG00000014734 RLG00000017640 RLG00000017642 RLG00000017645 RLG00000017646 RLG00000017795 RLG00000017796 RLG00000017925 RLG00000017926 RLG00000020068 RLG00000023393 RLG00000024495 RLG00000028027 RLG00000028033 RLG00000028034 RLG00000028035 RLG00000028037 RLG00000028040 RLG00000028041 RLG00000028072 RLG00000028159 RLG00000028160 RLG00000033360 RLG00000033399 RLG00000033401 RLG00000033402 RLG00000033403 RLG00000033404 RLG00000033405 RLG00000033407 RLG00000033408 RLG00000033411 RLG00000033414 RLG00000033470 RLG00000033769 RLG00000033772 RLG00000033997
rosa_multiflora Rmu_co8044118.1_g000001 Rmu_co8077552.1_g000001 Rmu_co8082100.1_g000001 Rmu_co8171646.1_g000001 Rmu_co8225604.1_g000001 Rmu_co8285705.1_g000001 Rmu_co8296369.1_g000001 Rmu_co8319685.1_g000001 Rmu_co8326977.1_g000001 Rmu_co8421957.1_g000001 Rmu_co8457997.1_g000001 Rmu_co8464379.1_g000001 Rmu_co8466539.1_g000001 Rmu_sc0000055.1_g000016 Rmu_sc0000064.1_g000032 Rmu_sc0000316.1_g000004 Rmu_sc0000316.1_g000010 Rmu_sc0000316.1_g000011 Rmu_sc0000394.1_g000016 Rmu_sc0001017.1_g000022 Rmu_sc0001484.1_g000003 Rmu_sc0002530.1_g000028 Rmu_sc0002530.1_g000031 Rmu_sc0002530.1_g000035 Rmu_sc0002587.1_g000043 Rmu_sc0002719.1_g000003 Rmu_sc0002719.1_g000005 Rmu_sc0002964.1_g000011 Rmu_sc0003031.1_g000001 Rmu_sc0003031.1_g000014 Rmu_sc0003031.1_g000027 Rmu_sc0003031.1_g000053 Rmu_sc0003552.1_g000003 Rmu_sc0003656.1_g000001 Rmu_sc0003916.1_g000001 Rmu_sc0003916.1_g000003 Rmu_sc0004100.1_g000001 Rmu_sc0004129.1_g000008 Rmu_sc0004365.1_g000001 Rmu_sc0004365.1_g000002 Rmu_sc0004542.1_g000017 Rmu_sc0004792.1_g000029 Rmu_sc0004792.1_g000032 Rmu_sc0004792.1_g000034 Rmu_sc0004792.1_g000035 Rmu_sc0004927.1_g000003 Rmu_sc0004927.1_g000005 Rmu_sc0004927.1_g000013 Rmu_sc0004927.1_g000023 Rmu_sc0005002.1_g000009 Rmu_sc0005002.1_g000028 Rmu_sc0005278.1_g000024 Rmu_sc0005278.1_g000025 Rmu_sc0005375.1_g000022 Rmu_sc0005728.1_g000005 Rmu_sc0005728.1_g000007 Rmu_sc0005770.1_g000017 Rmu_sc0005808.1_g000002 Rmu_sc0005808.1_g000004 Rmu_sc0006798.1_g000002 Rmu_sc0006798.1_g000003 Rmu_sc0006798.1_g000006 Rmu_sc0006798.1_g000007 Rmu_sc0006798.1_g000011 Rmu_sc0007406.1_g000014 Rmu_sc0007406.1_g000025 Rmu_sc0007965.1_g000011 Rmu_sc0009840.1_g000001 Rmu_sc0011812.1_g000005 Rmu_sc0015491.1_g000002 Rmu_sc0019008.1_g000001 Rmu_sc0019103.1_g000001 Rmu_sc0020236.1_g000002 Rmu_sc0021706.1_g000002 Rmu_sc0022958.1_g000008 Rmu_sc0026238.1_g000001 Rmu_sc0032550.1_g000001 Rmu_sc0034983.1_g000001 Rmu_sc0039890.1_g000002 Rmu_sc0041272.1_g000001 Rmu_sc0041373.1_g000001 Rmu_ssc0000100.1_g000012 Rmu_ssc0000100.1_g000017 Rmu_ssc0000100.1_g000031 Rmu_ssc0000100.1_g000033 Rmu_ssc0000386.1_g000042
rosa_roxburghii Rroxscaffold_1G00039940 Rroxscaffold_1G00039970 Rroxscaffold_1G00039980 Rroxscaffold_1G00043650 Rroxscaffold_1G00043700 Rroxscaffold_1G00047420 Rroxscaffold_1G00047430 Rroxscaffold_1G00047450 Rroxscaffold_1G00047470 Rroxscaffold_1G00047480 Rroxscaffold_1G00047500 Rroxscaffold_1G00047510 Rroxscaffold_1G00047520 Rroxscaffold_1G00047540 Rroxscaffold_1G00047570 Rroxscaffold_1G00047690 Rroxscaffold_1G00047720 Rroxscaffold_1G00047730 Rroxscaffold_1G00047740 Rroxscaffold_1G00047880 Rroxscaffold_1G00047900 Rroxscaffold_1G00047910 Rroxscaffold_1G00047920 Rroxscaffold_1G00047940 Rroxscaffold_1G00047950 Rroxscaffold_1G00047970 Rroxscaffold_1G00047980 Rroxscaffold_1G00048000 Rroxscaffold_2G00132060 Rroxscaffold_2G00132100 Rroxscaffold_2G00132110 Rroxscaffold_2G00133580 Rroxscaffold_2G00133630 Rroxscaffold_2G00133640 Rroxscaffold_2G00135480 Rroxscaffold_2G00135490 Rroxscaffold_2G00135530 Rroxscaffold_2G00135600 Rroxscaffold_2G00135630 Rroxscaffold_4G00291170 Rroxscaffold_4G00296260 Rroxscaffold_4G00296270 Rroxscaffold_4G00298840 Rroxscaffold_4G00298890 Rroxscaffold_4G00298900 Rroxscaffold_4G00298930 Rroxscaffold_4G00298960 Rroxscaffold_4G00299220 Rroxscaffold_5G00344530 Rroxscaffold_5G00353770 Rroxscaffold_5G00358640 Rroxscaffold_7G00202240 Rroxscaffold_7G00209000
rosa_rugosa Rorug01G0218600 Rorug01G0251800 Rorug01G0255100 Rorug01G0255200 Rorug01G0255500 Rorug01G0255700 Rorug01G0256400 Rorug01G0276200 Rorug01G0322400 Rorug02G0150200 Rorug02G0150300 Rorug02G0150400 Rorug02G0150700 Rorug02G0150800 Rorug02G0150900 Rorug02G0151000 Rorug02G0151100 Rorug02G0166000 Rorug02G0166100.1 Rorug02G0176300 Rorug02G0176400 Rorug02G0176700 Rorug03G0192200 Rorug03G0193100 Rorug04G0017700 Rorug04G0331400 Rorug05G0129400 Rorug05G0131900 Rorug05G0132200 Rorug05G0132300 Rorug05G0132300 Rorug05G0132400 Rorug05G0132500 Rorug05G0132600 Rorug05G0132700 Rorug05G0132800 Rorug05G0132900 Rorug05G0164000 Rorug05G0164000 Rorug05G0186700 Rorug05G0187000 Rorug05G0323000 Rorug05G0323000 Rorug05G0567400 Rorug07G0136000 Rorug07G0159500
rosa_samantha Rh1CG249900 Rh1CG253000 Rh1DG261400 Rh1DG264400 Rh1DG264800 Rh1DG264900 Rh1DG265600 Rh2AG218700 Rh2AG228900 Rh2AG229000 Rh2BG227800 Rh2BG241900 Rh2BG297700 Rh2DG224600 Rh2DG225000 Rh2DG236900 Rh3AG243400 Rh3CG273500 Rh4DG088000 Rh5CG246800 Rh5CG247800 Rh5CG252000 Rh5CG252100 Rh5CG252200 Rh5CG252500 Rh5CG252600 Rh5CG252800 Rh5CG253100 Rh5CG253200 Rh5CG253300 Rh5CG253900 Rh5CG254100 Rh5CG288700 Rh5CG288800 Rh5CG309700 Rh5CG309800 Rh5DG415100 Rh6BG078900 Rh6BG142900 Rh6CG073600 Rh6CG139500 Rh7CG210700
rosa_wichuraiana Rw0G015410 Rw1G023790 Rw1G023810 Rw1G023830 Rw1G023890 Rw1G023960 Rw1G024030 Rw1G024060 Rw1G024080 Rw1G024100 Rw2G015830 Rw2G015870 Rw2G015890 Rw2G016830 Rw2G016870 Rw2G016890 Rw2G017700 Rw2G017710 Rw2G017730 Rw3G021740 Rw3G026100 Rw4G007870 Rw5G020370 Rw5G020560 Rw5G020590 Rw5G020610 Rw5G020620 Rw5G020640 Rw5G020660 Rw5G023440 Rw5G023480 Rw5G025580 Rw5G025610 Rw5G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 412
AccB1I GGYRCC 3 cut(s) 268, 412, 944
AccI GTMKAC 2 cut(s) 335, 1496
AccII CGCG 2 cut(s) 52, 1636
AccIII TCCGGA 1 cut(s) 313
AclWI GGATC 3 cut(s) 305, 394, 2639
AcoI YGGCCR 4 cut(s) 39, 53, 909, 1268
AcsI RAATTY 9 cut(s) 638, 767, 1181, 1538, 1898, 1944, 2086, 2248, 2606
AcuI CTGAAG 2 cut(s) 1502, 2168
AcyI GRCGYC 1 cut(s) 269
AfaI GTAC 3 cut(s) 414, 616, 1633
AfiI CCNNNNNNNGG 4 cut(s) 81, 374, 408, 1425
AflIII ACRYGT 2 cut(s) 292, 1634
AhdI GACNNNNNGTC 1 cut(s) 331
AjiI CACGTC 1 cut(s) 293
AjnI CCWGG 4 cut(s) 741, 774, 988, 2718
AjuI GAANNNNNNNTTGG 2 cut(s) 101, 133
Alw26I GTCTC 4 cut(s) 159, 1159, 2153, 2425
AlwI GGATC 3 cut(s) 305, 394, 2639
AlwNI CAGNNNCTG 3 cut(s) 1093, 1346, 2423
Aor13HI TCCGGA 1 cut(s) 313
AoxI GGCC 8 cut(s) 39, 53, 132, 909, 1268, 1689, 1702, 2601
ApeKI GCWGC 5 cut(s) 883, 1045, 2138, 2550, 2735
ApoI RAATTY 9 cut(s) 638, 767, 1181, 1538, 1898, 1944, 2086, 2248, 2606
Asp700I GAANNNNTTC 1 cut(s) 1767
Asp718I GGTACC 1 cut(s) 412
AspA2I CCTAGG 1 cut(s) 80
AspLEI GCGC 3 cut(s) 271, 585, 673
AspS9I GGNCC 5 cut(s) 84, 133, 1702, 2287, 2317
AsuC2I CCSGG 4 cut(s) 131, 204, 249, 1108
AsuHPI GGTGA 7 cut(s) 336, 535, 847, 1909, 2011, 2045, 2602
AsuII TTCGAA 1 cut(s) 1852
AvaII GGWCC 3 cut(s) 84, 2287, 2317
AvrII CCTAGG 1 cut(s) 80
AxyI CCTNAGG 2 cut(s) 625, 1424
BaeI ACNNNNGTAYC 4 cut(s) 1561, 1594, 1597, 1630
BanI GGYRCC 3 cut(s) 268, 412, 944
BanII GRGCYC 1 cut(s) 432
BarI GAAGNNNNNNTAC 2 cut(s) 598, 630
BbsI GAAGAC 1 cut(s) 1064
BbvCI CCTCAGC 1 cut(s) 363
BbvI GCAGC 5 cut(s) 895, 1057, 2150, 2562, 2747
BceAI ACGGC 4 cut(s) 40, 256, 316, 802
BcgI CGANNNNNNTGC 4 cut(s) 289, 323, 716, 750
BciT130I CCWGG 4 cut(s) 743, 776, 990, 2720
BciVI GTATCC 1 cut(s) 1625
BclI TGATCA 2 cut(s) 1488, 2751
BcnI CCSGG 4 cut(s) 131, 204, 249, 1108
BcoDI GTCTC 4 cut(s) 159, 1159, 2153, 2425
BfaI CTAG 2 cut(s) 81, 2779
BfmI CTRYAG 2 cut(s) 2196, 2322
BfoI RGCGCY 1 cut(s) 272
BfuI GTATCC 1 cut(s) 1625
BglII AGATCT 2 cut(s) 1474, 2326
BlnI CCTAGG 1 cut(s) 80
Bme1390I CCNGG 8 cut(s) 131, 204, 249, 743, 776, 990, 1108, 2720
Bme18I GGWCC 3 cut(s) 84, 2287, 2317
BmeRI GACNNNNNGTC 1 cut(s) 331
BmgBI CACGTC 1 cut(s) 293
BmgT120I GGNCC 5 cut(s) 84, 133, 1702, 2287, 2317
BmiI GGNNCC 8 cut(s) 135, 270, 414, 429, 541, 740, 946, 2319
BmrFI CCNGG 8 cut(s) 131, 204, 249, 743, 776, 990, 1108, 2720
BmrI ACTGGG 1 cut(s) 2099
BmsI GCATC 7 cut(s) 309, 1530, 1979, 1992, 2389, 2452, 2761
BmuI ACTGGG 1 cut(s) 2099
BoxI GACNNNNGTC 1 cut(s) 82
BpiI GAAGAC 1 cut(s) 1064
BpmI CTGGAG 2 cut(s) 58, 908
Bpu10I CCTNAGC 1 cut(s) 363
Bpu14I TTCGAA 1 cut(s) 1852
BpuEI CTTGAG 1 cut(s) 1025
BpuMI CCSGG 4 cut(s) 131, 204, 249, 1108
Bsa29I ATCGAT 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 309
BsaHI GRCGYC 1 cut(s) 269
BsaJI CCNNGG 5 cut(s) 50, 80, 129, 924, 989
BsaWI WCCGGW 2 cut(s) 313, 645
Bsc4I CCNNNNNNNGG 4 cut(s) 81, 374, 408, 1425
Bse118I RCCGGY 2 cut(s) 520, 947
Bse1I ACTGG 4 cut(s) 618, 1098, 1920, 2105
Bse21I CCTNAGG 2 cut(s) 625, 1424
Bse3DI GCAATG 2 cut(s) 1341, 2409
Bse8I GATNNNNATC 1 cut(s) 309
BseAI TCCGGA 1 cut(s) 313
BseBI CCWGG 4 cut(s) 743, 776, 990, 2720
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 5 cut(s) 50, 80, 129, 924, 989
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 4 cut(s) 81, 374, 408, 1425
BseMI GCAATG 2 cut(s) 1341, 2409
BseMII CTCAG 5 cut(s) 33, 377, 639, 1300, 2148
BseNI ACTGG 4 cut(s) 618, 1098, 1920, 2105
BseRI GAGGAG 3 cut(s) 147, 157, 552
BseXI GCAGC 5 cut(s) 895, 1057, 2150, 2562, 2747
BseYI CCCAGC 1 cut(s) 2466
BsgI GTGCAG 2 cut(s) 1661, 2060
Bsh1236I CGCG 2 cut(s) 52, 1636
Bsh1285I CGRYCG 1 cut(s) 228
BshFI GGCC 8 cut(s) 41, 55, 134, 911, 1270, 1691, 1704, 2603
BshNI GGYRCC 3 cut(s) 268, 412, 944
BshVI ATCGAT 1 cut(s) 303
BsiEI CGRYCG 1 cut(s) 228
BsiWI CGTACG 1 cut(s) 1631
BslFI GGGAC 3 cut(s) 1123, 2303, 2513
BslI CCNNNNNNNGG 4 cut(s) 81, 374, 408, 1425
BsmAI GTCTC 4 cut(s) 159, 1159, 2153, 2425
BsmBI CGTCTC 2 cut(s) 159, 1159
BsmFI GGGAC 3 cut(s) 1123, 2303, 2513
BsmI GAATGC 2 cut(s) 1326, 2643
BsnI GGCC 8 cut(s) 41, 55, 134, 911, 1270, 1691, 1704, 2603
Bsp119I TTCGAA 1 cut(s) 1852
Bsp1286I GDGCHC 1 cut(s) 432
Bsp13I TCCGGA 1 cut(s) 313
Bsp143I GATC 8 cut(s) 310, 386, 1474, 1488, 1627, 2326, 2631, 2751
Bsp19I CCATGG 1 cut(s) 924
BspANI GGCC 8 cut(s) 41, 55, 134, 911, 1270, 1691, 1704, 2603
BspCNI CTCAG 5 cut(s) 32, 376, 638, 1299, 2149
BspDI ATCGAT 1 cut(s) 303
BspEI TCCGGA 1 cut(s) 313
BspFNI CGCG 2 cut(s) 52, 1636
BspLI GGNNCC 8 cut(s) 135, 270, 414, 429, 541, 740, 946, 2319
BspMAI CTGCAG 1 cut(s) 2326
BspPI GGATC 3 cut(s) 305, 394, 2639
BspQI GCTCTTC 1 cut(s) 122
BspT104I TTCGAA 1 cut(s) 1852
BspT107I GGYRCC 3 cut(s) 268, 412, 944
BsrDI GCAATG 2 cut(s) 1341, 2409
BsrFI RCCGGY 2 cut(s) 520, 947
BsrI ACTGG 4 cut(s) 618, 1098, 1920, 2105
BssAI RCCGGY 2 cut(s) 520, 947
BssECI CCNNGG 5 cut(s) 50, 80, 129, 924, 989
BssMI GATC 8 cut(s) 310, 386, 1474, 1488, 1627, 2326, 2631, 2751
BssNI GRCGYC 1 cut(s) 269
BssT1I CCWWGG 2 cut(s) 80, 924
Bst2UI CCWGG 4 cut(s) 743, 776, 990, 2720
Bst4CI ACNGT 6 cut(s) 229, 752, 1610, 1687, 2300, 2438
Bst6I CTCTTC 5 cut(s) 122, 165, 601, 783, 1989
BstACI GRCGYC 1 cut(s) 269
BstAPI GCANNNNNTGC 2 cut(s) 2047, 2423
BstBI TTCGAA 1 cut(s) 1852
BstC8I GCNNGC 6 cut(s) 200, 909, 949, 975, 2115, 2565
BstDEI CTNAG 7 cut(s) 19, 363, 625, 1286, 1424, 2157, 2163
BstDSI CCRYGG 2 cut(s) 50, 924
BstFNI CGCG 2 cut(s) 52, 1636
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 3 cut(s) 271, 585, 673
BstKTI GATC 8 cut(s) 313, 389, 1477, 1491, 1630, 2329, 2634, 2754
BstMAI GTCTC 4 cut(s) 159, 1159, 2153, 2425
BstMBI GATC 8 cut(s) 310, 386, 1474, 1488, 1627, 2326, 2631, 2751
BstMCI CGRYCG 1 cut(s) 228
BstNI CCWGG 4 cut(s) 743, 776, 990, 2720
BstNSI RCATGY 1 cut(s) 2079
BstPAI GACNNNNGTC 1 cut(s) 82
BstSCI CCNGG 8 cut(s) 129, 202, 247, 741, 774, 988, 1106, 2718
BstSFI CTRYAG 2 cut(s) 2196, 2322
BstUI CGCG 2 cut(s) 52, 1636
BstV1I GCAGC 5 cut(s) 895, 1057, 2150, 2562, 2747
BstV2I GAAGAC 1 cut(s) 1064
BstX2I RGATCY 3 cut(s) 386, 1474, 2326
BstYI RGATCY 3 cut(s) 386, 1474, 2326
Bsu15I ATCGAT 1 cut(s) 303
Bsu36I CCTNAGG 2 cut(s) 625, 1424
BsuI GTATCC 1 cut(s) 1625
BsuRI GGCC 8 cut(s) 41, 55, 134, 911, 1270, 1691, 1704, 2603
BsuTUI ATCGAT 1 cut(s) 303
BtgI CCRYGG 2 cut(s) 50, 924
BtrI CACGTC 1 cut(s) 293
BtsIMutI CAGTG 5 cut(s) 1091, 1452, 1615, 1927, 2515
Cac8I GCNNGC 6 cut(s) 200, 909, 949, 975, 2115, 2565
CaiI CAGNNNCTG 3 cut(s) 1093, 1346, 2423
CfoI GCGC 3 cut(s) 271, 585, 673
Cfr10I RCCGGY 2 cut(s) 520, 947
Cfr13I GGNCC 5 cut(s) 84, 133, 1702, 2287, 2317
Cfr42I CCGCGG 1 cut(s) 53
ClaI ATCGAT 1 cut(s) 303
Csp6I GTAC 3 cut(s) 413, 615, 1632
CviAII CATG 8 cut(s) 925, 1279, 1375, 1699, 2076, 2168, 2635, 2639
CviQI GTAC 3 cut(s) 413, 615, 1632
DdeI CTNAG 7 cut(s) 19, 363, 625, 1286, 1424, 2157, 2163
DinI GGCGCC 1 cut(s) 270
DpnI GATC 8 cut(s) 312, 388, 1476, 1490, 1629, 2328, 2633, 2753
DpnII GATC 8 cut(s) 310, 386, 1474, 1488, 1627, 2326, 2631, 2751
DraI TTTAAA 1 cut(s) 2253
DriI GACNNNNNGTC 1 cut(s) 331
EaeI YGGCCR 4 cut(s) 39, 53, 909, 1268
Eam1104I CTCTTC 5 cut(s) 122, 165, 601, 783, 1989
Eam1105I GACNNNNNGTC 1 cut(s) 331
EarI CTCTTC 5 cut(s) 122, 165, 601, 783, 1989
EciI GGCGGA 3 cut(s) 36, 182, 2759
Eco130I CCWWGG 2 cut(s) 80, 924
Eco24I GRGCYC 1 cut(s) 432
Eco47I GGWCC 3 cut(s) 84, 2287, 2317
Eco57I CTGAAG 2 cut(s) 1502, 2168
Eco81I CCTNAGG 2 cut(s) 625, 1424
EcoO109I RGGNCCY 2 cut(s) 84, 2317
EcoRI GAATTC 1 cut(s) 1181
EcoRII CCWGG 4 cut(s) 741, 774, 988, 2718
EcoT14I CCWWGG 2 cut(s) 80, 924
EcoT22I ATGCAT 2 cut(s) 2081, 2640
EcoT38I GRGCYC 1 cut(s) 432
EgeI GGCGCC 1 cut(s) 270
EheI GGCGCC 1 cut(s) 270
ErhI CCWWGG 2 cut(s) 80, 924
Esp3I CGTCTC 2 cut(s) 159, 1159
FaeI CATG 8 cut(s) 928, 1282, 1378, 1702, 2079, 2171, 2638, 2642
FaqI GGGAC 3 cut(s) 1123, 2303, 2513
FatI CATG 8 cut(s) 924, 1278, 1374, 1698, 2075, 2167, 2634, 2638
FauI CCCGC 3 cut(s) 145, 207, 1982
FauNDI CATATG 4 cut(s) 856, 1056, 2275, 2659
FbaI TGATCA 2 cut(s) 1488, 2751
FblI GTMKAC 2 cut(s) 335, 1496
FriOI GRGCYC 1 cut(s) 432
FspBI CTAG 2 cut(s) 81, 2779
GlaI GCGC 3 cut(s) 270, 584, 672
GsaI CCCAGC 1 cut(s) 2470
GsuI CTGGAG 2 cut(s) 58, 908
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 8 cut(s) 41, 55, 134, 911, 1270, 1691, 1704, 2603
HhaI GCGC 3 cut(s) 271, 585, 673
Hin1I GRCGYC 1 cut(s) 269
Hin1II CATG 8 cut(s) 928, 1282, 1378, 1702, 2079, 2171, 2638, 2642
Hin6I GCGC 3 cut(s) 269, 583, 671
HinP1I GCGC 3 cut(s) 269, 583, 671
HincII GTYRAC 1 cut(s) 996
HindII GTYRAC 1 cut(s) 996
HindIII AAGCTT 1 cut(s) 1753
HphI GGTGA 7 cut(s) 336, 535, 847, 1909, 2011, 2045, 2602
Hpy166II GTNNAC 5 cut(s) 336, 996, 1321, 1497, 1894
Hpy8I GTNNAC 5 cut(s) 336, 996, 1321, 1497, 1894
Hpy99I CGWCG 6 cut(s) 233, 277, 294, 636, 823, 943
HpyCH4III ACNGT 6 cut(s) 229, 752, 1610, 1687, 2300, 2438
HpyCH4IV ACGT 2 cut(s) 292, 486
HpyF3I CTNAG 7 cut(s) 19, 363, 625, 1286, 1424, 2157, 2163
HpySE526I ACGT 2 cut(s) 292, 486
Hsp92I GRCGYC 1 cut(s) 269
Hsp92II CATG 8 cut(s) 928, 1282, 1378, 1702, 2079, 2171, 2638, 2642
HspAI GCGC 3 cut(s) 269, 583, 671
KasI GGCGCC 1 cut(s) 268
Kpn2I TCCGGA 1 cut(s) 313
KpnI GGTACC 1 cut(s) 416
KroI GCCGGC 1 cut(s) 947
KroNI GCCGGC 1 cut(s) 949
Ksp22I TGATCA 2 cut(s) 1488, 2751
KspI CCGCGG 1 cut(s) 53
Kzo9I GATC 8 cut(s) 310, 386, 1474, 1488, 1627, 2326, 2631, 2751
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 5 cut(s) 427, 514, 539, 738, 2589
Lsp1109I GCAGC 5 cut(s) 895, 1057, 2150, 2562, 2747
LweI GCATC 7 cut(s) 309, 1530, 1979, 1992, 2389, 2452, 2761
MaeI CTAG 2 cut(s) 81, 2779
MaeII ACGT 2 cut(s) 292, 486
MaeIII GTNAC 8 cut(s) 241, 706, 1254, 1577, 1601, 2071, 2215, 2269
MalI GATC 8 cut(s) 312, 388, 1476, 1490, 1629, 2328, 2633, 2753
MboI GATC 8 cut(s) 310, 386, 1474, 1488, 1627, 2326, 2631, 2751
MfeI CAATTG 2 cut(s) 717, 2307
MflI RGATCY 3 cut(s) 386, 1474, 2326
MhlI GDGCHC 1 cut(s) 432
MluI ACGCGT 1 cut(s) 1634
Mly113I GGCGCC 1 cut(s) 269
MlyI GAGTC 2 cut(s) 11, 14
MmeI TCCRAC 5 cut(s) 120, 614, 801, 2004, 2376
Mph1103I ATGCAT 2 cut(s) 2081, 2640
MroI TCCGGA 1 cut(s) 313
MroNI GCCGGC 1 cut(s) 947
MroXI GAANNNNTTC 1 cut(s) 1767
MseI TTAA 5 cut(s) 1506, 1959, 2252, 2409, 2430
MslI CAYNNNNRTG 1 cut(s) 1142
MspA1I CMGCKG 2 cut(s) 52, 886
MspR9I CCNGG 8 cut(s) 131, 204, 249, 743, 776, 990, 1108, 2720
MunI CAATTG 2 cut(s) 717, 2307
Mva1269I GAATGC 2 cut(s) 1326, 2643
MvaI CCWGG 4 cut(s) 743, 776, 990, 2720
MvnI CGCG 2 cut(s) 52, 1636
NaeI GCCGGC 1 cut(s) 949
NarI GGCGCC 1 cut(s) 269
NciI CCSGG 4 cut(s) 131, 204, 249, 1108
NcoI CCATGG 1 cut(s) 924
NdeI CATATG 4 cut(s) 856, 1056, 2275, 2659
NdeII GATC 8 cut(s) 310, 386, 1474, 1488, 1627, 2326, 2631, 2751
NgoMIV GCCGGC 1 cut(s) 947
NlaIII CATG 8 cut(s) 928, 1282, 1378, 1702, 2079, 2171, 2638, 2642
NlaIV GGNNCC 8 cut(s) 135, 270, 414, 429, 541, 740, 946, 2319
NmeAIII GCCGAG 1 cut(s) 17
NmuCI GTSAC 3 cut(s) 241, 1254, 1577
NsiI ATGCAT 2 cut(s) 2081, 2640
NspI RCATGY 1 cut(s) 2079
NspV TTCGAA 1 cut(s) 1852
PciSI GCTCTTC 1 cut(s) 122
PcsI WCGNNNNNNNCGW 2 cut(s) 237, 272
PctI GAATGC 2 cut(s) 1326, 2643
PdiI GCCGGC 1 cut(s) 949
PdmI GAANNNNTTC 1 cut(s) 1767
Pfl23II CGTACG 1 cut(s) 1631
PfoI TCCNGGA 1 cut(s) 1106
PleI GAGTC 2 cut(s) 11, 13
PluTI GGCGCC 1 cut(s) 272
PpsI GAGTC 2 cut(s) 11, 13
PpuMI RGGWCCY 2 cut(s) 84, 2317
PshAI GACNNNNGTC 1 cut(s) 82
Psp5II RGGWCCY 2 cut(s) 84, 2317
Psp6I CCWGG 4 cut(s) 741, 774, 988, 2718
PspFI CCCAGC 1 cut(s) 2466
PspGI CCWGG 4 cut(s) 741, 774, 988, 2718
PspLI CGTACG 1 cut(s) 1631
PspN4I GGNNCC 8 cut(s) 135, 270, 414, 429, 541, 740, 946, 2319
PspPI GGNCC 5 cut(s) 84, 133, 1702, 2287, 2317
PspPPI RGGWCCY 2 cut(s) 84, 2317
PstI CTGCAG 1 cut(s) 2326
PstNI CAGNNNCTG 3 cut(s) 1093, 1346, 2423
PsuI RGATCY 3 cut(s) 386, 1474, 2326
PvuII CAGCTG 1 cut(s) 886
RsaI GTAC 3 cut(s) 414, 616, 1633
RsaNI GTAC 3 cut(s) 413, 615, 1632
RseI CAYNNNNRTG 1 cut(s) 1142
SacII CCGCGG 1 cut(s) 53
SapI GCTCTTC 1 cut(s) 122
SaqAI TTAA 5 cut(s) 1506, 1959, 2252, 2409, 2430
Sau3AI GATC 8 cut(s) 310, 386, 1474, 1488, 1627, 2326, 2631, 2751
Sau96I GGNCC 5 cut(s) 84, 133, 1702, 2287, 2317
SchI GAGTC 2 cut(s) 11, 14
ScrFI CCNGG 8 cut(s) 131, 204, 249, 743, 776, 990, 1108, 2720
SduI GDGCHC 1 cut(s) 432
SfaNI GCATC 7 cut(s) 309, 1530, 1979, 1992, 2389, 2452, 2761
SfcI CTRYAG 2 cut(s) 2196, 2322
SfoI GGCGCC 1 cut(s) 270
Sfr303I CCGCGG 1 cut(s) 53
SfuI TTCGAA 1 cut(s) 1852
SgrAI CRCCGGYG 1 cut(s) 520
SgrBI CCGCGG 1 cut(s) 53
SinI GGWCC 3 cut(s) 84, 2287, 2317
SmiMI CAYNNNNRTG 1 cut(s) 1142
SmlI CTYRAG 1 cut(s) 1040
SmoI CTYRAG 1 cut(s) 1040
SspDI GGCGCC 1 cut(s) 268
SspMI CTAG 2 cut(s) 81, 2779
StyD4I CCNGG 8 cut(s) 129, 202, 247, 741, 774, 988, 1106, 2718
StyI CCWWGG 2 cut(s) 80, 924
TaaI ACNGT 6 cut(s) 229, 752, 1610, 1687, 2300, 2438
TaiI ACGT 2 cut(s) 295, 489
TaqI TCGA 7 cut(s) 231, 281, 303, 309, 499, 920, 1852
Tru1I TTAA 5 cut(s) 1506, 1959, 2252, 2409, 2430
Tru9I TTAA 5 cut(s) 1506, 1959, 2252, 2409, 2430
TscAI CASTG 5 cut(s) 1098, 1452, 1615, 1927, 2515
TseFI GTSAC 3 cut(s) 241, 1254, 1577
TseI GCWGC 5 cut(s) 883, 1045, 2138, 2550, 2735
Tsp45I GTSAC 3 cut(s) 241, 1254, 1577
TspDTI ATGAA 9 cut(s) 699, 708, 1245, 1484, 1724, 1896, 2003, 2081, 2292
TspGWI ACGGA 2 cut(s) 588, 2602
TspRI CASTG 5 cut(s) 1098, 1452, 1615, 1927, 2515
VpaK11BI GGWCC 3 cut(s) 84, 2287, 2317
XapI RAATTY 9 cut(s) 638, 767, 1181, 1538, 1898, 1944, 2086, 2248, 2606
XceI RCATGY 1 cut(s) 2079
XmaJI CCTAGG 1 cut(s) 80
XmiI GTMKAC 2 cut(s) 335, 1496
XmnI GAANNNNTTC 1 cut(s) 1767
XspI CTAG 2 cut(s) 81, 2779
Zsp2I ATGCAT 2 cut(s) 2081, 2640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.