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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 35 |
| AccBSI | CCGCTC | 1 cut(s) | 60 |
| AccII | CGCG | 1 cut(s) | 201 |
| AciI | CCGC | 3 cut(s) | 58, 63, 199 |
| AcsI | RAATTY | 1 cut(s) | 250 |
| AcvI | CACGTG | 1 cut(s) | 465 |
| AcyI | GRCGYC | 1 cut(s) | 36 |
| AfaI | GTAC | 1 cut(s) | 309 |
| AjiI | CACGTC | 1 cut(s) | 228 |
| AjnI | CCWGG | 1 cut(s) | 310 |
| AluBI | AGCT | 3 cut(s) | 21, 106, 378 |
| AluI | AGCT | 3 cut(s) | 21, 106, 378 |
| ApeKI | GCWGC | 2 cut(s) | 21, 106 |
| ApoI | RAATTY | 1 cut(s) | 250 |
| AspLEI | GCGC | 1 cut(s) | 38 |
| AspS9I | GGNCC | 1 cut(s) | 314 |
| AsuC2I | CCSGG | 1 cut(s) | 10 |
| AsuHPI | GGTGA | 2 cut(s) | 112, 370 |
| AsuII | TTCGAA | 1 cut(s) | 131 |
| AvaII | GGWCC | 1 cut(s) | 314 |
| BanI | GGYRCC | 1 cut(s) | 35 |
| BbrPI | CACGTG | 1 cut(s) | 465 |
| BbsI | GAAGAC | 1 cut(s) | 163 |
| BbvI | GCAGC | 2 cut(s) | 8, 93 |
| BccI | CCATC | 3 cut(s) | 180, 250, 331 |
| BceAI | ACGGC | 1 cut(s) | 410 |
| BciT130I | CCWGG | 1 cut(s) | 312 |
| BcnI | CCSGG | 1 cut(s) | 10 |
| BfoI | RGCGCY | 1 cut(s) | 39 |
| BisI | GCNGC | 2 cut(s) | 22, 107 |
| BlsI | GCNGC | 2 cut(s) | 23, 108 |
| Bme1390I | CCNGG | 2 cut(s) | 10, 312 |
| Bme18I | GGWCC | 1 cut(s) | 314 |
| BmgBI | CACGTC | 1 cut(s) | 228 |
| BmgT120I | GGNCC | 1 cut(s) | 314 |
| BmiI | GGNNCC | 1 cut(s) | 37 |
| BmrFI | CCNGG | 2 cut(s) | 10, 312 |
| BpiI | GAAGAC | 1 cut(s) | 163 |
| Bpu14I | TTCGAA | 1 cut(s) | 131 |
| BpuEI | CTTGAG | 1 cut(s) | 279 |
| BpuMI | CCSGG | 1 cut(s) | 10 |
| Bsa29I | ATCGAT | 1 cut(s) | 245 |
| BsaAI | YACGTR | 1 cut(s) | 465 |
| BsaHI | GRCGYC | 1 cut(s) | 36 |
| Bse3DI | GCAATG | 1 cut(s) | 274 |
| BseBI | CCWGG | 1 cut(s) | 312 |
| BseCI | ATCGAT | 1 cut(s) | 245 |
| BseMI | GCAATG | 1 cut(s) | 274 |
| BseMII | CTCAG | 1 cut(s) | 321 |
| BseXI | GCAGC | 2 cut(s) | 8, 93 |
| BseYI | CCCAGC | 1 cut(s) | 17 |
| Bsh1236I | CGCG | 1 cut(s) | 201 |
| Bsh1285I | CGRYCG | 3 cut(s) | 101, 141, 199 |
| BshNI | GGYRCC | 1 cut(s) | 35 |
| BshVI | ATCGAT | 1 cut(s) | 245 |
| BsiEI | CGRYCG | 3 cut(s) | 101, 141, 199 |
| BsiSI | CCGG | 1 cut(s) | 9 |
| Bsp119I | TTCGAA | 1 cut(s) | 131 |
| Bsp143I | GATC | 3 cut(s) | 98, 138, 451 |
| BspACI | CCGC | 3 cut(s) | 58, 63, 199 |
| BspCNI | CTCAG | 1 cut(s) | 322 |
| BspDI | ATCGAT | 1 cut(s) | 245 |
| BspFNI | CGCG | 1 cut(s) | 201 |
| BspLI | GGNNCC | 1 cut(s) | 37 |
| BspQI | GCTCTTC | 1 cut(s) | 116 |
| BspT104I | TTCGAA | 1 cut(s) | 131 |
| BspT107I | GGYRCC | 1 cut(s) | 35 |
| BsrBI | CCGCTC | 1 cut(s) | 60 |
| BsrDI | GCAATG | 1 cut(s) | 274 |
| BssMI | GATC | 3 cut(s) | 98, 138, 451 |
| BssNI | GRCGYC | 1 cut(s) | 36 |
| Bst2UI | CCWGG | 1 cut(s) | 312 |
| Bst4CI | ACNGT | 1 cut(s) | 155 |
| Bst6I | CTCTTC | 1 cut(s) | 116 |
| BstACI | GRCGYC | 1 cut(s) | 36 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 285 |
| BstBAI | YACGTR | 1 cut(s) | 465 |
| BstBI | TTCGAA | 1 cut(s) | 131 |
| BstDEI | CTNAG | 2 cut(s) | 175, 330 |
| BstFNI | CGCG | 1 cut(s) | 201 |
| BstH2I | RGCGCY | 1 cut(s) | 39 |
| BstHHI | GCGC | 1 cut(s) | 38 |
| BstKTI | GATC | 3 cut(s) | 101, 141, 454 |
| BstMBI | GATC | 3 cut(s) | 98, 138, 451 |
| BstMCI | CGRYCG | 3 cut(s) | 101, 141, 199 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 207, 285 |
| BstNI | CCWGG | 1 cut(s) | 312 |
| BstSCI | CCNGG | 2 cut(s) | 8, 310 |
| BstUI | CGCG | 1 cut(s) | 201 |
| BstV1I | GCAGC | 2 cut(s) | 8, 93 |
| BstV2I | GAAGAC | 1 cut(s) | 163 |
| Bsu15I | ATCGAT | 1 cut(s) | 245 |
| BsuTUI | ATCGAT | 1 cut(s) | 245 |
| BtrI | CACGTC | 1 cut(s) | 228 |
| BtsI | GCAGTG | 1 cut(s) | 286 |
| BtsIMutI | CAGTG | 1 cut(s) | 286 |
| CfoI | GCGC | 1 cut(s) | 38 |
| Cfr13I | GGNCC | 1 cut(s) | 314 |
| ClaI | ATCGAT | 1 cut(s) | 245 |
| CsiI | ACCWGGT | 1 cut(s) | 310 |
| Csp6I | GTAC | 1 cut(s) | 308 |
| CviAII | CATG | 1 cut(s) | 191 |
| CviJI | RGCY | 6 cut(s) | 16, 21, 106, 323, 378, 425 |
| CviKI_1 | RGCY | 6 cut(s) | 16, 21, 106, 323, 378, 425 |
| CviQI | GTAC | 1 cut(s) | 308 |
| DdeI | CTNAG | 2 cut(s) | 175, 330 |
| DinI | GGCGCC | 1 cut(s) | 37 |
| DpnI | GATC | 3 cut(s) | 100, 140, 453 |
| DpnII | GATC | 3 cut(s) | 98, 138, 451 |
| Eam1104I | CTCTTC | 1 cut(s) | 116 |
| EarI | CTCTTC | 1 cut(s) | 116 |
| EciI | GGCGGA | 1 cut(s) | 52 |
| Eco47I | GGWCC | 1 cut(s) | 314 |
| Eco72I | CACGTG | 1 cut(s) | 465 |
| EcoRI | GAATTC | 1 cut(s) | 250 |
| EcoRII | CCWGG | 1 cut(s) | 310 |
| EgeI | GGCGCC | 1 cut(s) | 37 |
| EheI | GGCGCC | 1 cut(s) | 37 |
| FaeI | CATG | 1 cut(s) | 194 |
| FaiI | YATR | 3 cut(s) | 168, 192, 399 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 95, 127 |
| FatI | CATG | 1 cut(s) | 190 |
| Fnu4HI | GCNGC | 2 cut(s) | 22, 107 |
| Fsp4HI | GCNGC | 2 cut(s) | 22, 107 |
| GlaI | GCGC | 1 cut(s) | 37 |
| GluI | GCNGC | 2 cut(s) | 22, 107 |
| GsaI | CCCAGC | 1 cut(s) | 21 |
| HaeII | RGCGCY | 1 cut(s) | 39 |
| HapII | CCGG | 1 cut(s) | 9 |
| HhaI | GCGC | 1 cut(s) | 38 |
| Hin1I | GRCGYC | 1 cut(s) | 36 |
| Hin1II | CATG | 1 cut(s) | 194 |
| Hin6I | GCGC | 1 cut(s) | 36 |
| HinP1I | GCGC | 1 cut(s) | 36 |
| HincII | GTYRAC | 2 cut(s) | 151, 181 |
| HindII | GTYRAC | 2 cut(s) | 151, 181 |
| HinfI | GANTC | 3 cut(s) | 133, 363, 436 |
| HpaII | CCGG | 1 cut(s) | 9 |
| HphI | GGTGA | 2 cut(s) | 112, 370 |
| Hpy166II | GTNNAC | 3 cut(s) | 151, 181, 430 |
| Hpy188I | TCNGA | 3 cut(s) | 138, 388, 446 |
| Hpy188III | TCNNGA | 1 cut(s) | 367 |
| Hpy8I | GTNNAC | 3 cut(s) | 151, 181, 430 |
| Hpy99I | CGWCG | 1 cut(s) | 159 |
| HpyCH4III | ACNGT | 1 cut(s) | 155 |
| HpyCH4IV | ACGT | 3 cut(s) | 206, 227, 464 |
| HpyCH4V | TGCA | 2 cut(s) | 279, 288 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 207, 285 |
| HpyF3I | CTNAG | 2 cut(s) | 175, 330 |
| HpySE526I | ACGT | 3 cut(s) | 206, 227, 464 |
| Hsp92I | GRCGYC | 1 cut(s) | 36 |
| Hsp92II | CATG | 1 cut(s) | 194 |
| HspAI | GCGC | 1 cut(s) | 36 |
| KasI | GGCGCC | 1 cut(s) | 35 |
| Kzo9I | GATC | 3 cut(s) | 98, 138, 451 |
| LguI | GCTCTTC | 1 cut(s) | 116 |
| LmnI | GCTCC | 2 cut(s) | 60, 65 |
| LpnPI | CCDG | 4 cut(s) | 22, 31, 297, 324 |
| Lsp1109I | GCAGC | 2 cut(s) | 8, 93 |
| MabI | ACCWGGT | 1 cut(s) | 310 |
| MaeII | ACGT | 3 cut(s) | 206, 227, 464 |
| MaeIII | GTNAC | 2 cut(s) | 69, 158 |
| MalI | GATC | 3 cut(s) | 100, 140, 453 |
| MbiI | CCGCTC | 1 cut(s) | 60 |
| MboI | GATC | 3 cut(s) | 98, 138, 451 |
| MboII | GAAGA | 4 cut(s) | 103, 163, 275, 346 |
| MluCI | AATT | 2 cut(s) | 116, 250 |
| Mly113I | GGCGCC | 1 cut(s) | 36 |
| MmeI | TCCRAC | 1 cut(s) | 366 |
| MnlI | CCTC | 3 cut(s) | 49, 53, 427 |
| MslI | CAYNNNNRTG | 2 cut(s) | 165, 279 |
| MspA1I | CMGCKG | 1 cut(s) | 21 |
| MspI | CCGG | 1 cut(s) | 9 |
| MspR9I | CCNGG | 2 cut(s) | 10, 312 |
| MvaI | CCWGG | 1 cut(s) | 312 |
| MvnI | CGCG | 1 cut(s) | 201 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 207, 285 |
| NarI | GGCGCC | 1 cut(s) | 36 |
| NciI | CCSGG | 1 cut(s) | 10 |
| NdeII | GATC | 3 cut(s) | 98, 138, 451 |
| NlaIII | CATG | 1 cut(s) | 194 |
| NlaIV | GGNNCC | 1 cut(s) | 37 |
| NmuCI | GTSAC | 1 cut(s) | 158 |
| NspV | TTCGAA | 1 cut(s) | 131 |
| PciSI | GCTCTTC | 1 cut(s) | 116 |
| PfeI | GAWTC | 3 cut(s) | 133, 363, 436 |
| PkrI | GCNGC | 2 cut(s) | 23, 108 |
| Ple19I | CGATCG | 2 cut(s) | 101, 141 |
| PluTI | GGCGCC | 1 cut(s) | 39 |
| PmaCI | CACGTG | 1 cut(s) | 465 |
| PmlI | CACGTG | 1 cut(s) | 465 |
| Ppu21I | YACGTR | 1 cut(s) | 465 |
| Psp6I | CCWGG | 1 cut(s) | 310 |
| PspCI | CACGTG | 1 cut(s) | 465 |
| PspFI | CCCAGC | 1 cut(s) | 17 |
| PspGI | CCWGG | 1 cut(s) | 310 |
| PspN4I | GGNNCC | 1 cut(s) | 37 |
| PspPI | GGNCC | 1 cut(s) | 314 |
| PvuI | CGATCG | 2 cut(s) | 101, 141 |
| PvuII | CAGCTG | 1 cut(s) | 21 |
| RsaI | GTAC | 1 cut(s) | 309 |
| RsaNI | GTAC | 1 cut(s) | 308 |
| RseI | CAYNNNNRTG | 2 cut(s) | 165, 279 |
| SapI | GCTCTTC | 1 cut(s) | 116 |
| SatI | GCNGC | 2 cut(s) | 22, 107 |
| Sau3AI | GATC | 3 cut(s) | 98, 138, 451 |
| Sau96I | GGNCC | 1 cut(s) | 314 |
| ScrFI | CCNGG | 2 cut(s) | 10, 312 |
| SetI | ASST | 9 cut(s) | 23, 108, 125, 209, 230, 316, 380, 419, 467 |
| SexAI | ACCWGGT | 1 cut(s) | 310 |
| SfoI | GGCGCC | 1 cut(s) | 37 |
| SfuI | TTCGAA | 1 cut(s) | 131 |
| SinI | GGWCC | 1 cut(s) | 314 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 165, 279 |
| SmlI | CTYRAG | 1 cut(s) | 294 |
| SmoI | CTYRAG | 1 cut(s) | 294 |
| Sse9I | AATT | 2 cut(s) | 116, 250 |
| SsiI | CCGC | 3 cut(s) | 58, 63, 199 |
| SspDI | GGCGCC | 1 cut(s) | 35 |
| SspI | AATATT | 1 cut(s) | 238 |
| StyD4I | CCNGG | 2 cut(s) | 8, 310 |
| TaaI | ACNGT | 1 cut(s) | 155 |
| TaiI | ACGT | 3 cut(s) | 209, 230, 467 |
| TaqI | TCGA | 7 cut(s) | 101, 131, 141, 245, 380, 407, 454 |
| TaqII | GACCGA | 1 cut(s) | 198 |
| TasI | AATT | 2 cut(s) | 116, 250 |
| TfiI | GAWTC | 3 cut(s) | 133, 363, 436 |
| TscAI | CASTG | 1 cut(s) | 286 |
| TseFI | GTSAC | 1 cut(s) | 158 |
| TseI | GCWGC | 2 cut(s) | 21, 106 |
| Tsp45I | GTSAC | 1 cut(s) | 158 |
| TspDTI | ATGAA | 3 cut(s) | 99, 243, 263 |
| TspRI | CASTG | 1 cut(s) | 286 |
| VpaK11BI | GGWCC | 1 cut(s) | 314 |
| XapI | RAATTY | 1 cut(s) | 250 |