Rroxscaffold_4G00298930

L-type lectin-domain containing receptor kinase IX.1-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
18862910 .. 18864869
1960 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00298930.1

Sequence Viewer

Length: 1872 bp
ATGTCTGAAAGCAGCAGCACGCAAGCAATCTGCTTCTGTAATATTTGCTTCCTAATTATTTTCATCAATTTCCTCTCTCACTTTGCTCATCCACTCTCCTTCAGTATAGATCGGTTCGACAAGAGTGGAAATGGAGTTGTCTGTGATGGTGATGCGCATGTCAAGTTTTCATCCGGAGTGATCGAGCTCAACACAGCCACTTATTACCCTAGTACTAGCACTGGACATGCTACGTATGAAGAGCCTTTGCATCTATGGGACAATGCTACTGGGTCACTGGCAGACTTCACTACTCATTTCACTTTCGTGGTCAACTCTAGTTTTTACCCGAACTTCAGCGATGGGTTTGCCTTTTACCTTGCTCCTGTTGGCTACGGTATTCCACTCAACTCTGGCGGTAGTGAACTGGGATTATTCAACACCACCTACAATTTTAATGCCAAGATTGTAACCGTAGAGTTCGACACCTGGGGAGACAAGGACTATGGTTGGGATCCAGACTGGCCGCATATTGGGATAAACATCAACGAAATCTCTTCGGTTACGTCCGCCAAATGGAATGCCAGTAACATCATCGGGAAGACAGGCAATACTACTTCTTCCCTTACTTACCATGTTGACTTGCGAAAGGTTCTCCCCGAAAATGTTACAATTGGTTTTTCTGCTTCGTCCAGAGGTATATATGGGTTGTATTCTTTACATTCATGGGCGTTTAATTCGACTTTGTTGGATAACGATACTAGAAGAGCCGAAAGCAAGGGAAAGAAAAAGATATTATTGATATTGGTCATTGCAGTACCTGGCTTCATTTTCACGCTTGGTGCAGTCATATGTTGGTTGATGGTATTAAGGAATCGGAGAAACAATTACTCTGGCCTAGTCTCTGATCTTGAGAAGCTAGCCATTCCAAAAAGATTTGCTTACCAAGAATTGTTTGCTGCCACCAACGGGTTTGCAGACAATAGAAGGCTAGGCCAAGGAGGGTCGGGACAAGTATATAAAGGACTCCTACAAGACCTTGGAGGCTGCACAGTTGCCGTGAAGAGAATCTTTGCAAGATTTGATCAGCAATATGAGAAAGTCTTCATCAATGAAGTCAAAATCATCAGCCGCTTAATCCATCGAAACCTGGTGCAGTTCATTGGGTGGTGTCATGAGCAAGGGGAATGCTTAATTGTTTATGCATATATGCCAAACAGCAGCCTCGATACGCATCTATTTGGCACCAGAACAACCCTGCAATGGGATAACAGGTACAAGATAGCTATGGGATTGGCCTCAGCCCTTCACTATCTACATGAAGATGCAGAGCAGTGTGTTCTTCATAGGGATATCAAATCTGCTAACATACTGTTGGGTGATGACTTCAGCACTAAGCTTGGTGATTTTGGTATCGCTAAGCTCGGGGATCCCCACTTGAGGTCTCAAACAACAAAGTTGGTAGGGACTGTTGGATACATGGCCCCGGAATATGCAACTGAAGGGAGGGCAAGTAAGGAATCTGACATGTATAGTTTTGGAGTTGTAGCCTTGGAAATTGCTTGTGGAAGGAAGACCTACCAAGACGGTAAAGATCACGTGCCACTCTTTAGGTGGGTTTGGCAGTTGTTCCTTGGAGGAAATATTCTGGATGCAGCTGATGAAAGATTAGATATGAATTATGATCGAAATGAAATGAAATGCTTGTTGATTGTTGGACTATGGTGTACTCACTCCAATTACAAGGAAAGACCCAAAGCAGGACAGGTGATGGAGGTTCTTCAGCGTAAAGCACCATTGCCGGAACTTCCATATGACATGCATGGTGATCCAGAACTGCCACAACATCAATACGATTCTCAGATGTCCTCAACTTCTTCTAGCTATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

623

Amino Acids

69.76

Weight (kDa)

6.13

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 32 - 192 4.9e-37 Legume lectin domain
Lectin_legB PF00139 197 - 246 2.1e-08 Legume lectin domain
Pkinase PF00069 319 - 584 6.6e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 321 - 525 1.1e-42 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10530 AT5G65600
fragaria_vesca FvH4_1g17770 FvH4_1g19171 FvH4_1g19180 FvH4_1g19922 FvH4_1g19923 FvH4_1g19940 FvH4_1g19950 FvH4_3g19030 FvH4_3g19040 FvH4_3g19350 FvH4_3g19361 FvH4_3g19370 FvH4_3g19372 FvH4_3g19390 FvH4_3g19390 FvH4_3g19400 FvH4_3g19400 FvH4_3g23100 FvH4_3g32500 FvH4_3g39140 FvH4_4g12891 FvH4_4g12900 FvH4_5g13890 FvH4_6g23490 FvH4_7g14930 FvH4_7g14950 FvH4_7g15082 FvH4_7g16980
malus_domestica MD01G1043400.v1.1 MD01G1043500.v1.1 MD03G1232800.v1.1 MD03G1232900.v1.1 MD03G1233000.v1.1 MD03G1233100.v1.1 MD03G1233200.v1.1 MD03G1233300.v1.1 MD03G1233600.v1.1 MD03G1233700.v1.1 MD03G1233900.v1.1 MD03G1234100.v1.1 MD03G1234300.v1.1 MD03G1234400.v1.1 MD03G1234500.v1.1 MD03G1234600.v1.1 MD08G1053200.v1.1 MD08G1053400.v1.1 MD08G1053500.v1.1 MD08G1053600.v1.1 MD08G1053800.v1.1 MD08G1053900.v1.1 MD08G1054000.v1.1 MD08G1054100.v1.1 MD08G1054200.v1.1 MD08G1054400.v1.1 MD08G1054600.v1.1 MD09G1175200.v1.1 MD09G1289800.v1.1 MD09G1289900.v1.1 MD11G1253600.v1.1 MD11G1254300.v1.1 MD11G1254500.v1.1 MD11G1254900.v1.1 MD11G1255100.v1.1 MD15G1042500.v1.1 MD15G1053100.v1.1 MD15G1053200.v1.1 MD15G1307500.v1.1
prunus_persica Prupe.1G157800_v2.0.a1 Prupe.1G395700_v2.0.a1 Prupe.4G174600_v2.0.a1 Prupe.4G174800_v2.0.a1 Prupe.4G174900_v2.0.a1 Prupe.4G175000_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175300_v2.0.a1 Prupe.4G175400_v2.0.a1 Prupe.4G175500_v2.0.a1 Prupe.4G175600_v2.0.a1 Prupe.4G175700_v2.0.a1 Prupe.4G241200_v2.0.a1 Prupe.6G208500_v2.0.a1 Prupe.6G208700_v2.0.a1 Prupe.6G208800_v2.0.a1 Prupe.8G117500_v2.0.a1 Prupe.I004200_v2.0.a1 Prupe.I004300_v2.0.a1
pyrus_communis pycom03g18010 pycom03g18050 pycom03g18070 pycom03g18100 pycom08g04440 pycom09g19760 pycom11g22500 pycom11g22510 pycom11g22520
rosa_chinensis RchiOBHm_Chr1g0318811 RchiOBHm_Chr1g0329471 RchiOBHm_Chr1g0340841 RchiOBHm_Chr1g0340931 RchiOBHm_Chr1g0356861 RchiOBHm_Chr1g0357251 RchiOBHm_Chr1g0357261 RchiOBHm_Chr1g0357321 RchiOBHm_Chr1g0360231 RchiOBHm_Chr1g0365521 RchiOBHm_Chr1g0365571 RchiOBHm_Chr1g0365581 RchiOBHm_Chr2g0108101 RchiOBHm_Chr2g0108131 RchiOBHm_Chr2g0108161 RchiOBHm_Chr2g0108191 RchiOBHm_Chr2g0108201 RchiOBHm_Chr2g0110211 RchiOBHm_Chr2g0110221 RchiOBHm_Chr2g0110261 RchiOBHm_Chr2g0110301 RchiOBHm_Chr2g0111801 RchiOBHm_Chr2g0111821 RchiOBHm_Chr2g0128081 RchiOBHm_Chr2g0151141 RchiOBHm_Chr3g0469441 RchiOBHm_Chr3g0481491 RchiOBHm_Chr4g0399611 RchiOBHm_Chr4g0414891 RchiOBHm_Chr5g0031941 RchiOBHm_Chr5g0032011 RchiOBHm_Chr5g0032051 RchiOBHm_Chr5g0032101 RchiOBHm_Chr5g0032421 RchiOBHm_Chr5g0032461 RchiOBHm_Chr5g0032481 RchiOBHm_Chr5g0032541 RchiOBHm_Chr5g0032571 RchiOBHm_Chr5g0032591 RchiOBHm_Chr5g0032631 RchiOBHm_Chr5g0037251 RchiOBHm_Chr5g0037271 RchiOBHm_Chr5g0037281 RchiOBHm_Chr5g0037291 RchiOBHm_Chr5g0040701 RchiOBHm_Chr5g0040731 RchiOBHm_Chr5g0059491 RchiOBHm_Chr6g0257841 RchiOBHm_Chr6g0274701 RchiOBHm_Chr7g0212711
rosa_laevigata RLG00000002585 RLG00000002586 RLG00000008111 RLG00000009258 RLG00000012123 RLG00000014148 RLG00000014734 RLG00000017640 RLG00000017642 RLG00000017645 RLG00000017646 RLG00000017795 RLG00000017796 RLG00000017925 RLG00000017926 RLG00000020068 RLG00000023393 RLG00000024495 RLG00000028027 RLG00000028033 RLG00000028034 RLG00000028035 RLG00000028037 RLG00000028040 RLG00000028041 RLG00000028072 RLG00000028159 RLG00000028160 RLG00000033360 RLG00000033399 RLG00000033401 RLG00000033402 RLG00000033403 RLG00000033404 RLG00000033405 RLG00000033407 RLG00000033408 RLG00000033411 RLG00000033414 RLG00000033470 RLG00000033769 RLG00000033772 RLG00000033997
rosa_multiflora Rmu_co8044118.1_g000001 Rmu_co8077552.1_g000001 Rmu_co8082100.1_g000001 Rmu_co8171646.1_g000001 Rmu_co8225604.1_g000001 Rmu_co8285705.1_g000001 Rmu_co8296369.1_g000001 Rmu_co8319685.1_g000001 Rmu_co8326977.1_g000001 Rmu_co8421957.1_g000001 Rmu_co8457997.1_g000001 Rmu_co8464379.1_g000001 Rmu_co8466539.1_g000001 Rmu_sc0000055.1_g000016 Rmu_sc0000064.1_g000032 Rmu_sc0000316.1_g000004 Rmu_sc0000316.1_g000010 Rmu_sc0000316.1_g000011 Rmu_sc0000394.1_g000016 Rmu_sc0001017.1_g000022 Rmu_sc0001484.1_g000003 Rmu_sc0002530.1_g000028 Rmu_sc0002530.1_g000031 Rmu_sc0002530.1_g000035 Rmu_sc0002587.1_g000043 Rmu_sc0002719.1_g000003 Rmu_sc0002719.1_g000005 Rmu_sc0002964.1_g000011 Rmu_sc0003031.1_g000001 Rmu_sc0003031.1_g000014 Rmu_sc0003031.1_g000027 Rmu_sc0003031.1_g000053 Rmu_sc0003552.1_g000003 Rmu_sc0003656.1_g000001 Rmu_sc0003916.1_g000001 Rmu_sc0003916.1_g000003 Rmu_sc0004100.1_g000001 Rmu_sc0004129.1_g000008 Rmu_sc0004365.1_g000001 Rmu_sc0004365.1_g000002 Rmu_sc0004542.1_g000017 Rmu_sc0004792.1_g000029 Rmu_sc0004792.1_g000032 Rmu_sc0004792.1_g000034 Rmu_sc0004792.1_g000035 Rmu_sc0004927.1_g000003 Rmu_sc0004927.1_g000005 Rmu_sc0004927.1_g000013 Rmu_sc0004927.1_g000023 Rmu_sc0005002.1_g000009 Rmu_sc0005002.1_g000028 Rmu_sc0005278.1_g000024 Rmu_sc0005278.1_g000025 Rmu_sc0005375.1_g000022 Rmu_sc0005728.1_g000005 Rmu_sc0005728.1_g000007 Rmu_sc0005770.1_g000017 Rmu_sc0005808.1_g000002 Rmu_sc0005808.1_g000004 Rmu_sc0006798.1_g000002 Rmu_sc0006798.1_g000003 Rmu_sc0006798.1_g000006 Rmu_sc0006798.1_g000007 Rmu_sc0006798.1_g000011 Rmu_sc0007406.1_g000014 Rmu_sc0007406.1_g000025 Rmu_sc0007965.1_g000011 Rmu_sc0009840.1_g000001 Rmu_sc0011812.1_g000005 Rmu_sc0015491.1_g000002 Rmu_sc0019008.1_g000001 Rmu_sc0019103.1_g000001 Rmu_sc0020236.1_g000002 Rmu_sc0021706.1_g000002 Rmu_sc0022958.1_g000008 Rmu_sc0026238.1_g000001 Rmu_sc0032550.1_g000001 Rmu_sc0034983.1_g000001 Rmu_sc0039890.1_g000002 Rmu_sc0041272.1_g000001 Rmu_sc0041373.1_g000001 Rmu_ssc0000100.1_g000012 Rmu_ssc0000100.1_g000017 Rmu_ssc0000100.1_g000031 Rmu_ssc0000100.1_g000033 Rmu_ssc0000386.1_g000042
rosa_roxburghii Rroxscaffold_1G00039940 Rroxscaffold_1G00039970 Rroxscaffold_1G00039980 Rroxscaffold_1G00043650 Rroxscaffold_1G00043700 Rroxscaffold_1G00047420 Rroxscaffold_1G00047430 Rroxscaffold_1G00047450 Rroxscaffold_1G00047470 Rroxscaffold_1G00047480 Rroxscaffold_1G00047500 Rroxscaffold_1G00047510 Rroxscaffold_1G00047520 Rroxscaffold_1G00047540 Rroxscaffold_1G00047570 Rroxscaffold_1G00047690 Rroxscaffold_1G00047720 Rroxscaffold_1G00047730 Rroxscaffold_1G00047740 Rroxscaffold_1G00047880 Rroxscaffold_1G00047900 Rroxscaffold_1G00047910 Rroxscaffold_1G00047920 Rroxscaffold_1G00047940 Rroxscaffold_1G00047950 Rroxscaffold_1G00047970 Rroxscaffold_1G00047980 Rroxscaffold_1G00048000 Rroxscaffold_2G00132060 Rroxscaffold_2G00132100 Rroxscaffold_2G00132110 Rroxscaffold_2G00133580 Rroxscaffold_2G00133630 Rroxscaffold_2G00133640 Rroxscaffold_2G00135480 Rroxscaffold_2G00135490 Rroxscaffold_2G00135530 Rroxscaffold_2G00135600 Rroxscaffold_2G00135630 Rroxscaffold_4G00291170 Rroxscaffold_4G00296260 Rroxscaffold_4G00296270 Rroxscaffold_4G00298840 Rroxscaffold_4G00298890 Rroxscaffold_4G00298900 Rroxscaffold_4G00298930 Rroxscaffold_4G00298960 Rroxscaffold_4G00299220 Rroxscaffold_5G00344530 Rroxscaffold_5G00353770 Rroxscaffold_5G00358640 Rroxscaffold_7G00202240 Rroxscaffold_7G00209000
rosa_rugosa Rorug01G0218600 Rorug01G0251800 Rorug01G0255100 Rorug01G0255200 Rorug01G0255500 Rorug01G0255700 Rorug01G0256400 Rorug01G0276200 Rorug01G0322400 Rorug02G0150200 Rorug02G0150300 Rorug02G0150400 Rorug02G0150700 Rorug02G0150800 Rorug02G0150900 Rorug02G0151000 Rorug02G0151100 Rorug02G0166000 Rorug02G0166100.1 Rorug02G0176300 Rorug02G0176400 Rorug02G0176700 Rorug03G0192200 Rorug03G0193100 Rorug04G0017700 Rorug04G0331400 Rorug05G0129400 Rorug05G0131900 Rorug05G0132200 Rorug05G0132300 Rorug05G0132300 Rorug05G0132400 Rorug05G0132500 Rorug05G0132600 Rorug05G0132700 Rorug05G0132800 Rorug05G0132900 Rorug05G0164000 Rorug05G0164000 Rorug05G0186700 Rorug05G0187000 Rorug05G0323000 Rorug05G0323000 Rorug05G0567400 Rorug07G0136000 Rorug07G0159500
rosa_samantha Rh1CG249900 Rh1CG253000 Rh1DG261400 Rh1DG264400 Rh1DG264800 Rh1DG264900 Rh1DG265600 Rh2AG218700 Rh2AG228900 Rh2AG229000 Rh2BG227800 Rh2BG241900 Rh2BG297700 Rh2DG224600 Rh2DG225000 Rh2DG236900 Rh3AG243400 Rh3CG273500 Rh4DG088000 Rh5CG246800 Rh5CG247800 Rh5CG252000 Rh5CG252100 Rh5CG252200 Rh5CG252500 Rh5CG252600 Rh5CG252800 Rh5CG253100 Rh5CG253200 Rh5CG253300 Rh5CG253900 Rh5CG254100 Rh5CG288700 Rh5CG288800 Rh5CG309700 Rh5CG309800 Rh5DG415100 Rh6BG078900 Rh6BG142900 Rh6CG073600 Rh6CG139500 Rh7CG210700
rosa_wichuraiana Rw0G015410 Rw1G023790 Rw1G023810 Rw1G023830 Rw1G023890 Rw1G023960 Rw1G024030 Rw1G024060 Rw1G024080 Rw1G024100 Rw2G015830 Rw2G015870 Rw2G015890 Rw2G016830 Rw2G016870 Rw2G016890 Rw2G017700 Rw2G017710 Rw2G017730 Rw3G021740 Rw3G026100 Rw4G007870 Rw5G020370 Rw5G020560 Rw5G020590 Rw5G020610 Rw5G020620 Rw5G020640 Rw5G020660 Rw5G023440 Rw5G023480 Rw5G025580 Rw5G025610 Rw5G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 156
AccB1I GGYRCC 1 cut(s) 1223
AccIII TCCGGA 1 cut(s) 173
AciI CCGC 4 cut(s) 396, 506, 549, 1111
AclWI GGATC 5 cut(s) 488, 501, 1403, 1416, 1802
AcoI YGGCCR 1 cut(s) 503
AcuI CTGAAG 5 cut(s) 85, 319, 1351, 1500, 1745
AcvI CACGTG 1 cut(s) 1579
AfaI GTAC 4 cut(s) 214, 798, 1256, 1708
AfiI CCNNNNNNNGG 7 cut(s) 512, 555, 948, 1242, 1243, 1419, 1739
AflIII ACRYGT 1 cut(s) 1506
AgsI TTSAA 1 cut(s) 418
AjnI CCWGG 3 cut(s) 467, 799, 1128
AleI CACNNNNGTG 1 cut(s) 305
AluBI AGCT 7 cut(s) 187, 898, 1265, 1378, 1402, 1637, 1863
AluI AGCT 7 cut(s) 187, 898, 1265, 1378, 1402, 1637, 1863
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 3 cut(s) 468, 886, 1428
AlwI GGATC 5 cut(s) 488, 501, 1403, 1416, 1802
AlwNI CAGNNNCTG 1 cut(s) 800
Ama87I CYCGRG 1 cut(s) 1403
Aor13HI TCCGGA 1 cut(s) 173
AoxI GGCC 5 cut(s) 503, 874, 973, 1275, 1461
ApeKI GCWGC 6 cut(s) 12, 15, 938, 1026, 1200, 1634
Asp700I GAANNNNTTC 1 cut(s) 1082
AspLEI GCGC 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 1462
AsuC2I CCSGG 1 cut(s) 1466
AsuHPI GGTGA 5 cut(s) 161, 1370, 1394, 1759, 1817
AsuNHI GCTAGC 1 cut(s) 898
AvaI CYCGRG 1 cut(s) 1403
BamHI GGATCC 2 cut(s) 493, 1408
BanI GGYRCC 1 cut(s) 1223
BanII GRGCYC 1 cut(s) 189
BbrPI CACGTG 1 cut(s) 1579
BbsI GAAGAC 3 cut(s) 587, 1075, 1559
Bbv12I GWGCWC 1 cut(s) 189
BbvCI CCTCAGC 1 cut(s) 1279
BbvI GCAGC 6 cut(s) 24, 27, 925, 1013, 1212, 1646
BccI CCATC 5 cut(s) 140, 335, 835, 1128, 1744
BceAI ACGGC 1 cut(s) 1022
BcgI CGANNNNNNTGC 2 cut(s) 329, 363
BciT130I CCWGG 3 cut(s) 469, 801, 1130
BciVI GTATCC 1 cut(s) 1448
BclI TGATCA 1 cut(s) 1063
BcnI CCSGG 1 cut(s) 1466
BcoDI GTCTC 3 cut(s) 468, 886, 1428
BfaI CTAG 8 cut(s) 210, 216, 318, 741, 878, 899, 971, 1860
BfuI GTATCC 1 cut(s) 1448
BisI GCNGC 8 cut(s) 13, 16, 506, 939, 1027, 1111, 1201, 1635
BlpI GCTNAGC 1 cut(s) 1398
BlsI GCNGC 8 cut(s) 14, 17, 507, 940, 1028, 1112, 1202, 1636
BmcAI AGTACT 1 cut(s) 214
Bme1390I CCNGG 4 cut(s) 469, 801, 1130, 1466
BmeT110I CYCGRG 1 cut(s) 1403
BmgT120I GGNCC 1 cut(s) 1462
BmiI GGNNCC 4 cut(s) 495, 1225, 1410, 1464
BmrFI CCNGG 4 cut(s) 469, 801, 1130, 1466
BmrI ACTGGG 2 cut(s) 279, 416
BmsI GCATC 5 cut(s) 142, 259, 1222, 1294, 1621
BmtI GCTAGC 1 cut(s) 902
BmuI ACTGGG 2 cut(s) 279, 416
BpiI GAAGAC 3 cut(s) 587, 1075, 1559
Bpu10I CCTNAGC 1 cut(s) 1279
Bpu1102I GCTNAGC 1 cut(s) 1398
BpuEI CTTGAG 2 cut(s) 911, 1438
BpuMI CCSGG 1 cut(s) 1466
BsaAI YACGTR 2 cut(s) 234, 1579
BsaBI GATNNNNATC 2 cut(s) 521, 1212
BsaI GGTCTC 1 cut(s) 1428
BsaJI CCNNGG 6 cut(s) 468, 976, 1018, 1464, 1530, 1612
BsaWI WCCGGW 1 cut(s) 173
BsaXI ACNNNNNCTCC 2 cut(s) 1477, 1507
Bsc4I CCNNNNNNNGG 7 cut(s) 512, 555, 948, 1242, 1243, 1419, 1739
Bse1I ACTGG 6 cut(s) 226, 274, 282, 411, 506, 564
Bse3DI GCAATG 3 cut(s) 789, 1247, 1775
Bse8I GATNNNNATC 2 cut(s) 521, 1212
BseAI TCCGGA 1 cut(s) 173
BseBI CCWGG 3 cut(s) 469, 801, 1130
BseDI CCNNGG 6 cut(s) 468, 976, 1018, 1464, 1530, 1612
BseGI GGATG 3 cut(s) 88, 170, 1636
BseJI GATNNNNATC 2 cut(s) 521, 1212
BseLI CCNNNNNNNGG 7 cut(s) 512, 555, 948, 1242, 1243, 1419, 1739
BseMI GCAATG 3 cut(s) 789, 1247, 1775
BseMII CTCAG 2 cut(s) 1293, 1853
BseNI ACTGG 6 cut(s) 226, 274, 282, 411, 506, 564
BseXI GCAGC 6 cut(s) 24, 27, 925, 1013, 1212, 1646
BsgI GTGCAG 3 cut(s) 843, 1012, 1154
BshFI GGCC 5 cut(s) 505, 876, 975, 1277, 1463
BshNI GGYRCC 1 cut(s) 1223
BsiHKAI GWGCWC 1 cut(s) 189
BsiHKCI CYCGRG 1 cut(s) 1403
BsiSI CCGG 3 cut(s) 174, 1466, 1781
BslFI GGGAC 3 cut(s) 272, 1002, 1459
BslI CCNNNNNNNGG 7 cut(s) 512, 555, 948, 1242, 1243, 1419, 1739
BsmAI GTCTC 3 cut(s) 468, 886, 1428
BsmFI GGGAC 3 cut(s) 272, 1002, 1459
BsmI GAATGC 2 cut(s) 565, 1172
BsnI GGCC 5 cut(s) 505, 876, 975, 1277, 1463
Bso31I GGTCTC 1 cut(s) 1428
BsoBI CYCGRG 1 cut(s) 1403
Bsp1286I GDGCHC 1 cut(s) 189
Bsp13I TCCGGA 1 cut(s) 173
Bsp143I GATC 9 cut(s) 109, 180, 493, 886, 1063, 1408, 1573, 1663, 1807
Bsp1720I GCTNAGC 1 cut(s) 1398
BspACI CCGC 4 cut(s) 396, 506, 549, 1111
BspANI GGCC 5 cut(s) 505, 876, 975, 1277, 1463
BspCNI CTCAG 2 cut(s) 1292, 1852
BspEI TCCGGA 1 cut(s) 173
BspHI TCATGA 1 cut(s) 1153
BspLI GGNNCC 4 cut(s) 495, 1225, 1410, 1464
BspOI GCTAGC 1 cut(s) 902
BspPI GGATC 5 cut(s) 488, 501, 1403, 1416, 1802
BspQI GCTCTTC 2 cut(s) 234, 739
BspT107I GGYRCC 1 cut(s) 1223
BspTNI GGTCTC 1 cut(s) 1428
BsrDI GCAATG 3 cut(s) 789, 1247, 1775
BsrI ACTGG 6 cut(s) 226, 274, 282, 411, 506, 564
BssECI CCNNGG 6 cut(s) 468, 976, 1018, 1464, 1530, 1612
BssMI GATC 9 cut(s) 109, 180, 493, 886, 1063, 1408, 1573, 1663, 1807
BssT1I CCWWGG 4 cut(s) 976, 1018, 1530, 1612
Bst2UI CCWGG 3 cut(s) 469, 801, 1130
Bst4CI ACNGT 6 cut(s) 377, 454, 1033, 1353, 1450, 1568
Bst6I CTCTTC 4 cut(s) 234, 541, 739, 1037
BstBAI YACGTR 2 cut(s) 234, 1579
BstC8I GCNNGC 3 cut(s) 20, 24, 900
BstDEI CTNAG 4 cut(s) 1279, 1374, 1398, 1839
BstF5I GGATG 3 cut(s) 88, 170, 1636
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 9 cut(s) 112, 183, 496, 889, 1066, 1411, 1576, 1666, 1810
BstMAI GTCTC 3 cut(s) 468, 886, 1428
BstMBI GATC 9 cut(s) 109, 180, 493, 886, 1063, 1408, 1573, 1663, 1807
BstNI CCWGG 3 cut(s) 469, 801, 1130
BstNSI RCATGY 4 cut(s) 161, 230, 1510, 1801
BstSCI CCNGG 4 cut(s) 467, 799, 1128, 1464
BstSNI TACGTA 1 cut(s) 234
BstV1I GCAGC 6 cut(s) 24, 27, 925, 1013, 1212, 1646
BstV2I GAAGAC 3 cut(s) 587, 1075, 1559
BstX2I RGATCY 2 cut(s) 493, 1408
BstYI RGATCY 2 cut(s) 493, 1408
BsuI GTATCC 1 cut(s) 1448
BsuRI GGCC 5 cut(s) 505, 876, 975, 1277, 1463
BtgZI GCGATG 1 cut(s) 354
BtsCI GGATG 3 cut(s) 88, 170, 1636
BtsI GCAGTG 1 cut(s) 1319
BtsIMutI CAGTG 3 cut(s) 219, 275, 1319
Cac8I GCNNGC 3 cut(s) 20, 24, 900
CaiI CAGNNNCTG 1 cut(s) 800
CciI TCATGA 1 cut(s) 1153
CfoI GCGC 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 1462
CsiI ACCWGGT 1 cut(s) 1128
Csp6I GTAC 4 cut(s) 213, 797, 1255, 1707
CviQI GTAC 4 cut(s) 213, 797, 1255, 1707
DdeI CTNAG 4 cut(s) 1279, 1374, 1398, 1839
DpnI GATC 9 cut(s) 111, 182, 495, 888, 1065, 1410, 1575, 1665, 1809
DpnII GATC 9 cut(s) 109, 180, 493, 886, 1063, 1408, 1573, 1663, 1807
EaeI YGGCCR 1 cut(s) 503
Eam1104I CTCTTC 4 cut(s) 234, 541, 739, 1037
EarI CTCTTC 4 cut(s) 234, 541, 739, 1037
EciI GGCGGA 1 cut(s) 538
Ecl136II GAGCTC 1 cut(s) 187
Eco105I TACGTA 1 cut(s) 234
Eco130I CCWWGG 4 cut(s) 976, 1018, 1530, 1612
Eco24I GRGCYC 1 cut(s) 189
Eco31I GGTCTC 1 cut(s) 1428
Eco32I GATATC 1 cut(s) 1333
Eco53kI GAGCTC 1 cut(s) 187
Eco57I CTGAAG 5 cut(s) 85, 319, 1351, 1500, 1745
Eco72I CACGTG 1 cut(s) 1579
Eco88I CYCGRG 1 cut(s) 1403
EcoICRI GAGCTC 1 cut(s) 187
EcoRII CCWGG 3 cut(s) 467, 799, 1128
EcoRV GATATC 1 cut(s) 1333
EcoT14I CCWWGG 4 cut(s) 976, 1018, 1530, 1612
EcoT22I ATGCAT 2 cut(s) 1186, 1803
EcoT38I GRGCYC 1 cut(s) 189
ErhI CCWWGG 4 cut(s) 976, 1018, 1530, 1612
FalI AAGNNNNNCTT 4 cut(s) 904, 936, 1034, 1066
FaqI GGGAC 3 cut(s) 272, 1002, 1459
FauNDI CATATG 2 cut(s) 830, 1792
FbaI TGATCA 1 cut(s) 1063
Fnu4HI GCNGC 8 cut(s) 13, 16, 506, 939, 1027, 1111, 1201, 1635
FokI GGATG 3 cut(s) 75, 157, 1643
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 8 cut(s) 13, 16, 506, 939, 1027, 1111, 1201, 1635
FspAI RTGCGCAY 1 cut(s) 156
FspBI CTAG 8 cut(s) 210, 216, 318, 741, 878, 899, 971, 1860
FspI TGCGCA 1 cut(s) 156
GlaI GCGC 1 cut(s) 156
GluI GCNGC 8 cut(s) 13, 16, 506, 939, 1027, 1111, 1201, 1635
HaeIII GGCC 5 cut(s) 505, 876, 975, 1277, 1463
HapII CCGG 3 cut(s) 174, 1466, 1781
HhaI GCGC 1 cut(s) 157
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HincII GTYRAC 2 cut(s) 313, 619
HindII GTYRAC 2 cut(s) 313, 619
HindIII AAGCTT 1 cut(s) 1376
HinfI GANTC 5 cut(s) 853, 1005, 1047, 1499, 1835
HpaII CCGG 3 cut(s) 174, 1466, 1781
HphI GGTGA 5 cut(s) 161, 1370, 1394, 1759, 1817
Hpy166II GTNNAC 4 cut(s) 313, 404, 619, 1707
Hpy188I TCNGA 5 cut(s) 7, 858, 886, 1504, 1842
Hpy188III TCNNGA 9 cut(s) 174, 497, 577, 672, 890, 987, 1154, 1628, 1811
Hpy8I GTNNAC 4 cut(s) 313, 404, 619, 1707
HpyAV CCTTC 5 cut(s) 109, 960, 1295, 1475, 1542
HpyCH4III ACNGT 6 cut(s) 377, 454, 1033, 1353, 1450, 1568
HpyCH4IV ACGT 3 cut(s) 233, 545, 1578
HpyF3I CTNAG 4 cut(s) 1279, 1374, 1398, 1839
HpySE526I ACGT 3 cut(s) 233, 545, 1578
HspAI GCGC 1 cut(s) 155
Kpn2I TCCGGA 1 cut(s) 173
Ksp22I TGATCA 1 cut(s) 1063
Kzo9I GATC 9 cut(s) 109, 180, 493, 886, 1063, 1408, 1573, 1663, 1807
LguI GCTCTTC 2 cut(s) 234, 739
LmnI GCTCC 1 cut(s) 367
Lsp1109I GCAGC 6 cut(s) 24, 27, 925, 1013, 1212, 1646
LweI GCATC 5 cut(s) 142, 259, 1222, 1294, 1621
MabI ACCWGGT 1 cut(s) 1128
MaeI CTAG 8 cut(s) 210, 216, 318, 741, 878, 899, 971, 1860
MaeII ACGT 3 cut(s) 233, 545, 1578
MaeIII GTNAC 5 cut(s) 273, 448, 541, 566, 646
MalI GATC 9 cut(s) 111, 182, 495, 888, 1065, 1410, 1575, 1665, 1809
MboI GATC 9 cut(s) 109, 180, 493, 886, 1063, 1408, 1573, 1663, 1807
MfeI CAATTG 1 cut(s) 651
MflI RGATCY 2 cut(s) 493, 1408
MhlI GDGCHC 1 cut(s) 189
MlyI GAGTC 1 cut(s) 999
MmeI TCCRAC 3 cut(s) 708, 1432, 1675
Mph1103I ATGCAT 2 cut(s) 1186, 1803
MroI TCCGGA 1 cut(s) 173
MroXI GAANNNNTTC 1 cut(s) 1082
MseI TTAA 5 cut(s) 435, 714, 848, 1115, 1172
MslI CAYNNNNRTG 2 cut(s) 305, 1302
MspA1I CMGCKG 1 cut(s) 1637
MspI CCGG 3 cut(s) 174, 1466, 1781
MspR9I CCNGG 4 cut(s) 469, 801, 1130, 1466
MunI CAATTG 1 cut(s) 651
Mva1269I GAATGC 2 cut(s) 565, 1172
MvaI CCWGG 3 cut(s) 469, 801, 1130
NciI CCSGG 1 cut(s) 1466
NdeI CATATG 2 cut(s) 830, 1792
NdeII GATC 9 cut(s) 109, 180, 493, 886, 1063, 1408, 1573, 1663, 1807
NheI GCTAGC 1 cut(s) 898
NlaIV GGNNCC 4 cut(s) 495, 1225, 1410, 1464
NmuCI GTSAC 1 cut(s) 273
NsbI TGCGCA 1 cut(s) 156
NsiI ATGCAT 2 cut(s) 1186, 1803
NspI RCATGY 4 cut(s) 161, 230, 1510, 1801
OliI CACNNNNGTG 1 cut(s) 305
PagI TCATGA 1 cut(s) 1153
PciI ACATGT 1 cut(s) 1506
PciSI GCTCTTC 2 cut(s) 234, 739
PctI GAATGC 2 cut(s) 565, 1172
PdmI GAANNNNTTC 1 cut(s) 1082
PfeI GAWTC 4 cut(s) 853, 1047, 1499, 1835
PkrI GCNGC 8 cut(s) 14, 17, 507, 940, 1028, 1112, 1202, 1636
PleI GAGTC 1 cut(s) 999
PmaCI CACGTG 1 cut(s) 1579
PmlI CACGTG 1 cut(s) 1579
PpsI GAGTC 1 cut(s) 999
Ppu21I YACGTR 2 cut(s) 234, 1579
PscI ACATGT 1 cut(s) 1506
Psp124BI GAGCTC 1 cut(s) 189
Psp6I CCWGG 3 cut(s) 467, 799, 1128
PspCI CACGTG 1 cut(s) 1579
PspGI CCWGG 3 cut(s) 467, 799, 1128
PspN4I GGNNCC 4 cut(s) 495, 1225, 1410, 1464
PspPI GGNCC 1 cut(s) 1462
PstNI CAGNNNCTG 1 cut(s) 800
PsuI RGATCY 2 cut(s) 493, 1408
PvuII CAGCTG 1 cut(s) 1637
RsaI GTAC 4 cut(s) 214, 798, 1256, 1708
RsaNI GTAC 4 cut(s) 213, 797, 1255, 1707
RseI CAYNNNNRTG 2 cut(s) 305, 1302
SacI GAGCTC 1 cut(s) 189
SapI GCTCTTC 2 cut(s) 234, 739
SaqAI TTAA 5 cut(s) 435, 714, 848, 1115, 1172
SatI GCNGC 8 cut(s) 13, 16, 506, 939, 1027, 1111, 1201, 1635
Sau3AI GATC 9 cut(s) 109, 180, 493, 886, 1063, 1408, 1573, 1663, 1807
Sau96I GGNCC 1 cut(s) 1462
ScaI AGTACT 1 cut(s) 214
SchI GAGTC 1 cut(s) 999
ScrFI CCNGG 4 cut(s) 469, 801, 1130, 1466
SduI GDGCHC 1 cut(s) 189
SexAI ACCWGGT 1 cut(s) 1128
SfaNI GCATC 5 cut(s) 142, 259, 1222, 1294, 1621
SmiMI CAYNNNNRTG 2 cut(s) 305, 1302
SmlI CTYRAG 2 cut(s) 890, 1417
SmoI CTYRAG 2 cut(s) 890, 1417
SnaBI TACGTA 1 cut(s) 234
SsiI CCGC 4 cut(s) 396, 506, 549, 1111
SspI AATATT 2 cut(s) 43, 1624
SspMI CTAG 8 cut(s) 210, 216, 318, 741, 878, 899, 971, 1860
SstI GAGCTC 1 cut(s) 189
StyD4I CCNGG 4 cut(s) 467, 799, 1128, 1464
StyI CCWWGG 4 cut(s) 976, 1018, 1530, 1612
TaaI ACNGT 6 cut(s) 377, 454, 1033, 1353, 1450, 1568
TaiI ACGT 3 cut(s) 236, 548, 1581
TaqI TCGA 7 cut(s) 117, 183, 462, 719, 1123, 1206, 1666
TatI WGTACW 2 cut(s) 212, 1706
TauI GCSGC 2 cut(s) 508, 1113
TfiI GAWTC 4 cut(s) 853, 1047, 1499, 1835
Tru1I TTAA 5 cut(s) 435, 714, 848, 1115, 1172
Tru9I TTAA 5 cut(s) 435, 714, 848, 1115, 1172
TscAI CASTG 3 cut(s) 226, 282, 1319
TseFI GTSAC 1 cut(s) 273
TseI GCWGC 6 cut(s) 12, 15, 938, 1026, 1200, 1634
Tsp45I GTSAC 1 cut(s) 273
TspRI CASTG 3 cut(s) 226, 282, 1319
XceI RCATGY 4 cut(s) 161, 230, 1510, 1801
XcmI CCANNNNNNNNNTGG 1 cut(s) 1590
XmnI GAANNNNTTC 1 cut(s) 1082
XspI CTAG 8 cut(s) 210, 216, 318, 741, 878, 899, 971, 1860
ZrmI AGTACT 1 cut(s) 214
Zsp2I ATGCAT 2 cut(s) 1186, 1803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.