Rroxscaffold_1G00048000

L-type lectin-domain containing receptor kinase IX.1-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
68011343 .. 68013352
2010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00048000.1

Sequence Viewer

Length: 2010 bp
ATGGGTGCTCTAGTGGCGCTAGTGTTATGTATCTTCTTTCACAAGGGCTTAACAGAAACTCCATTAACCTTCAATTTCTCTTCCTTCCACAGTGAATATGACAATACTGTTATATTAACAGAAGGAGATGCCAATGTTGGTAACCCATTCCTTCACCTAACAAAAGACAACATAGGTGAACTAGAAACTATGAGTGTTGGTCGAGCCTTCTACCGTGAACCCTTCCTCCTTTGGGACTACGCCACAGAGAAAATGGCGGATTTCTCCACAAGTTTTACATTCGCCATCATCAGTACAGACGAAACAGCACCCTCCTGCGGTGATGGGTTTGTGTTCTTCCTAGCACCATATGGAACGATACTCTACAGCTCATTAGGAGCTGGAGCCAGTCTTGGCCTCCCCATCAACAGCACACAGCAAAACGTCACCGTCCCGAAGAGTCAGCACCCATTTGTGGCAGTGGAGTTTGATATCTACCCGAATACACTTCCACCCGTAGACGATCCCAGCTATCAACACGTTGGCATCGACGTCAACTCTATCAGGTCTAGTAAAACCGCTCCTTGGAATCATGCTACACTTTCATCTTATAATTATCTTCAAGGAGATGAAGTCAATACTGCGTGGGTTAGTTATAATTCTACCACGAATAATCTTAGTGTGGCCTTCACTAGTTTTGTACATGATGACCCAGTGATTAGTTATCTTTATTACGTTGTTGATCTGAGGCAGTGCTTGCCGGATGTGGTCATTGTTGGGTTCTCTGCGGCAACGGGGAATCAAACTGCTATGCATAAGATCATCTCTTGGAATTTTACTTCTACTTCTTTGGAGATTCCTCCGCCAATCCCCGCCTACTCTAATGTATCAGCAGGACCAGTTGTCTGGTTGATTATTGGTGGGTGTATTTTTATAGTTGGCGGGTTCGTCTGGTGGAAGGAAAGGGAAACCAGAGAGAGTGATAGAGATGGTATGATTACTGATGGGATCAAATATGAATTGCAAAACGGGTTTGGCCCAAGACAGTTTACATACAGTGAATTGGCTCACTCTACAAGTAAGTTTGCAGAGGGAGAAAAGCTTGGAGAGGGAGGATTTGGTGGGGTTTATAGAGGCTTCATAAAACAGTTGAACTTGTATATTGCTGTTAAGAGGATATCCAAGGAGTCTAGACAAGGGTTGAAGGAGTATGCTTCAGAACTAAGGACTATCAGTCGACTTAGGCATCGAAATGTGGTGCAACTCATTGGTTGGTGCCATGAAAAAAGAGAACTTTTACTTGTTTACGAGTTAATGCCCAACAGCAGCTTAGACTTCCATCTGTTCAAAGCACAAAGCTTGTTGATTTGGGAGGTAAGATACAGAATTGCTTTAGGCTTGGCCTCCGGACTGTTGTATCTACACGAAGAATGGGAACAATGTGTACTACATAGGGATATTAAGTCCTCTAATGTGATGTTGGATTCAAATTTCAATGCCAAACTTGGGGATTTTGGGTTAGCTCGACTCGTGGACCATGGAAAACAATCACAAACAACAGTTCTGGCTGGAACCATGGGCTACATGGCTCCAGAATATATAACCACGGGAAAGGCTAGCAGGGAATCTGATGTCTATAGCTTTGGGGTTGTTGCTATGGAGATAGCTTGTGGGAGAAAACCCATCGATTCCAAGTTTGAAAGTGATCAAATCAGTATGGTGGAATGGATTTCTGAGCTTTATGCAGAAGGAAAAATTCTCGAAGCGGCCGACCCAAAACTGTGTGGAGAATTTGATGAGAAGCAAATGGAGTGCTTGCTGATTGTTGGATTGTGGTGTGGTCACTTCAATCACAACATCAGGCCTTCGATACAAGAAGCTATCCAAGTGCTTAACTTCAAACTTCCAATGCCCATTCTCCCATCCAATATGTCGATGGCCACCTTTGCGCCTTCAGTTTCATTCTCAACATTGTCAAATGATACTACTGGTTTTGAAAAAAGTCAAACCAAGTCCACCTTTGTTCACTAA

Protein Analysis

669

Amino Acids

74.62

Weight (kDa)

5.33

Isoelectric Point (pI)

38.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 22 - 276 1.6e-60 Legume lectin domain
Lectin_L-type_dom PF18483 86 - 267 1.6e-07 Legume lectin beta-barrel domain
Pkinase PF00069 356 - 622 2.6e-49 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 358 - 568 1e-44 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10530 AT5G65600
fragaria_vesca FvH4_1g17770 FvH4_1g19171 FvH4_1g19180 FvH4_1g19922 FvH4_1g19923 FvH4_1g19940 FvH4_1g19950 FvH4_3g19030 FvH4_3g19040 FvH4_3g19350 FvH4_3g19361 FvH4_3g19370 FvH4_3g19372 FvH4_3g19390 FvH4_3g19390 FvH4_3g19400 FvH4_3g19400 FvH4_3g23100 FvH4_3g32500 FvH4_3g39140 FvH4_4g12891 FvH4_4g12900 FvH4_5g13890 FvH4_6g23490 FvH4_7g14930 FvH4_7g14950 FvH4_7g15082 FvH4_7g16980
malus_domestica MD01G1043400.v1.1 MD01G1043500.v1.1 MD03G1232800.v1.1 MD03G1232900.v1.1 MD03G1233000.v1.1 MD03G1233100.v1.1 MD03G1233200.v1.1 MD03G1233300.v1.1 MD03G1233600.v1.1 MD03G1233700.v1.1 MD03G1233900.v1.1 MD03G1234100.v1.1 MD03G1234300.v1.1 MD03G1234400.v1.1 MD03G1234500.v1.1 MD03G1234600.v1.1 MD08G1053200.v1.1 MD08G1053400.v1.1 MD08G1053500.v1.1 MD08G1053600.v1.1 MD08G1053800.v1.1 MD08G1053900.v1.1 MD08G1054000.v1.1 MD08G1054100.v1.1 MD08G1054200.v1.1 MD08G1054400.v1.1 MD08G1054600.v1.1 MD09G1175200.v1.1 MD09G1289800.v1.1 MD09G1289900.v1.1 MD11G1253600.v1.1 MD11G1254300.v1.1 MD11G1254500.v1.1 MD11G1254900.v1.1 MD11G1255100.v1.1 MD15G1042500.v1.1 MD15G1053100.v1.1 MD15G1053200.v1.1 MD15G1307500.v1.1
prunus_persica Prupe.1G157800_v2.0.a1 Prupe.1G395700_v2.0.a1 Prupe.4G174600_v2.0.a1 Prupe.4G174800_v2.0.a1 Prupe.4G174900_v2.0.a1 Prupe.4G175000_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175300_v2.0.a1 Prupe.4G175400_v2.0.a1 Prupe.4G175500_v2.0.a1 Prupe.4G175600_v2.0.a1 Prupe.4G175700_v2.0.a1 Prupe.4G241200_v2.0.a1 Prupe.6G208500_v2.0.a1 Prupe.6G208700_v2.0.a1 Prupe.6G208800_v2.0.a1 Prupe.8G117500_v2.0.a1 Prupe.I004200_v2.0.a1 Prupe.I004300_v2.0.a1
pyrus_communis pycom03g18010 pycom03g18050 pycom03g18070 pycom03g18100 pycom08g04440 pycom09g19760 pycom11g22500 pycom11g22510 pycom11g22520
rosa_chinensis RchiOBHm_Chr1g0318811 RchiOBHm_Chr1g0329471 RchiOBHm_Chr1g0340841 RchiOBHm_Chr1g0340931 RchiOBHm_Chr1g0356861 RchiOBHm_Chr1g0357251 RchiOBHm_Chr1g0357261 RchiOBHm_Chr1g0357321 RchiOBHm_Chr1g0360231 RchiOBHm_Chr1g0365521 RchiOBHm_Chr1g0365571 RchiOBHm_Chr1g0365581 RchiOBHm_Chr2g0108101 RchiOBHm_Chr2g0108131 RchiOBHm_Chr2g0108161 RchiOBHm_Chr2g0108191 RchiOBHm_Chr2g0108201 RchiOBHm_Chr2g0110211 RchiOBHm_Chr2g0110221 RchiOBHm_Chr2g0110261 RchiOBHm_Chr2g0110301 RchiOBHm_Chr2g0111801 RchiOBHm_Chr2g0111821 RchiOBHm_Chr2g0128081 RchiOBHm_Chr2g0151141 RchiOBHm_Chr3g0469441 RchiOBHm_Chr3g0481491 RchiOBHm_Chr4g0399611 RchiOBHm_Chr4g0414891 RchiOBHm_Chr5g0031941 RchiOBHm_Chr5g0032011 RchiOBHm_Chr5g0032051 RchiOBHm_Chr5g0032101 RchiOBHm_Chr5g0032421 RchiOBHm_Chr5g0032461 RchiOBHm_Chr5g0032481 RchiOBHm_Chr5g0032541 RchiOBHm_Chr5g0032571 RchiOBHm_Chr5g0032591 RchiOBHm_Chr5g0032631 RchiOBHm_Chr5g0037251 RchiOBHm_Chr5g0037271 RchiOBHm_Chr5g0037281 RchiOBHm_Chr5g0037291 RchiOBHm_Chr5g0040701 RchiOBHm_Chr5g0040731 RchiOBHm_Chr5g0059491 RchiOBHm_Chr6g0257841 RchiOBHm_Chr6g0274701 RchiOBHm_Chr7g0212711
rosa_laevigata RLG00000002585 RLG00000002586 RLG00000008111 RLG00000009258 RLG00000012123 RLG00000014148 RLG00000014734 RLG00000017640 RLG00000017642 RLG00000017645 RLG00000017646 RLG00000017795 RLG00000017796 RLG00000017925 RLG00000017926 RLG00000020068 RLG00000023393 RLG00000024495 RLG00000028027 RLG00000028033 RLG00000028034 RLG00000028035 RLG00000028037 RLG00000028040 RLG00000028041 RLG00000028072 RLG00000028159 RLG00000028160 RLG00000033360 RLG00000033399 RLG00000033401 RLG00000033402 RLG00000033403 RLG00000033404 RLG00000033405 RLG00000033407 RLG00000033408 RLG00000033411 RLG00000033414 RLG00000033470 RLG00000033769 RLG00000033772 RLG00000033997
rosa_multiflora Rmu_co8044118.1_g000001 Rmu_co8077552.1_g000001 Rmu_co8082100.1_g000001 Rmu_co8171646.1_g000001 Rmu_co8225604.1_g000001 Rmu_co8285705.1_g000001 Rmu_co8296369.1_g000001 Rmu_co8319685.1_g000001 Rmu_co8326977.1_g000001 Rmu_co8421957.1_g000001 Rmu_co8457997.1_g000001 Rmu_co8464379.1_g000001 Rmu_co8466539.1_g000001 Rmu_sc0000055.1_g000016 Rmu_sc0000064.1_g000032 Rmu_sc0000316.1_g000004 Rmu_sc0000316.1_g000010 Rmu_sc0000316.1_g000011 Rmu_sc0000394.1_g000016 Rmu_sc0001017.1_g000022 Rmu_sc0001484.1_g000003 Rmu_sc0002530.1_g000028 Rmu_sc0002530.1_g000031 Rmu_sc0002530.1_g000035 Rmu_sc0002587.1_g000043 Rmu_sc0002719.1_g000003 Rmu_sc0002719.1_g000005 Rmu_sc0002964.1_g000011 Rmu_sc0003031.1_g000001 Rmu_sc0003031.1_g000014 Rmu_sc0003031.1_g000027 Rmu_sc0003031.1_g000053 Rmu_sc0003552.1_g000003 Rmu_sc0003656.1_g000001 Rmu_sc0003916.1_g000001 Rmu_sc0003916.1_g000003 Rmu_sc0004100.1_g000001 Rmu_sc0004129.1_g000008 Rmu_sc0004365.1_g000001 Rmu_sc0004365.1_g000002 Rmu_sc0004542.1_g000017 Rmu_sc0004792.1_g000029 Rmu_sc0004792.1_g000032 Rmu_sc0004792.1_g000034 Rmu_sc0004792.1_g000035 Rmu_sc0004927.1_g000003 Rmu_sc0004927.1_g000005 Rmu_sc0004927.1_g000013 Rmu_sc0004927.1_g000023 Rmu_sc0005002.1_g000009 Rmu_sc0005002.1_g000028 Rmu_sc0005278.1_g000024 Rmu_sc0005278.1_g000025 Rmu_sc0005375.1_g000022 Rmu_sc0005728.1_g000005 Rmu_sc0005728.1_g000007 Rmu_sc0005770.1_g000017 Rmu_sc0005808.1_g000002 Rmu_sc0005808.1_g000004 Rmu_sc0006798.1_g000002 Rmu_sc0006798.1_g000003 Rmu_sc0006798.1_g000006 Rmu_sc0006798.1_g000007 Rmu_sc0006798.1_g000011 Rmu_sc0007406.1_g000014 Rmu_sc0007406.1_g000025 Rmu_sc0007965.1_g000011 Rmu_sc0009840.1_g000001 Rmu_sc0011812.1_g000005 Rmu_sc0015491.1_g000002 Rmu_sc0019008.1_g000001 Rmu_sc0019103.1_g000001 Rmu_sc0020236.1_g000002 Rmu_sc0021706.1_g000002 Rmu_sc0022958.1_g000008 Rmu_sc0026238.1_g000001 Rmu_sc0032550.1_g000001 Rmu_sc0034983.1_g000001 Rmu_sc0039890.1_g000002 Rmu_sc0041272.1_g000001 Rmu_sc0041373.1_g000001 Rmu_ssc0000100.1_g000012 Rmu_ssc0000100.1_g000017 Rmu_ssc0000100.1_g000031 Rmu_ssc0000100.1_g000033 Rmu_ssc0000386.1_g000042
rosa_roxburghii Rroxscaffold_1G00039940 Rroxscaffold_1G00039970 Rroxscaffold_1G00039980 Rroxscaffold_1G00043650 Rroxscaffold_1G00043700 Rroxscaffold_1G00047420 Rroxscaffold_1G00047430 Rroxscaffold_1G00047450 Rroxscaffold_1G00047470 Rroxscaffold_1G00047480 Rroxscaffold_1G00047500 Rroxscaffold_1G00047510 Rroxscaffold_1G00047520 Rroxscaffold_1G00047540 Rroxscaffold_1G00047570 Rroxscaffold_1G00047690 Rroxscaffold_1G00047720 Rroxscaffold_1G00047730 Rroxscaffold_1G00047740 Rroxscaffold_1G00047880 Rroxscaffold_1G00047900 Rroxscaffold_1G00047910 Rroxscaffold_1G00047920 Rroxscaffold_1G00047940 Rroxscaffold_1G00047950 Rroxscaffold_1G00047970 Rroxscaffold_1G00047980 Rroxscaffold_1G00048000 Rroxscaffold_2G00132060 Rroxscaffold_2G00132100 Rroxscaffold_2G00132110 Rroxscaffold_2G00133580 Rroxscaffold_2G00133630 Rroxscaffold_2G00133640 Rroxscaffold_2G00135480 Rroxscaffold_2G00135490 Rroxscaffold_2G00135530 Rroxscaffold_2G00135600 Rroxscaffold_2G00135630 Rroxscaffold_4G00291170 Rroxscaffold_4G00296260 Rroxscaffold_4G00296270 Rroxscaffold_4G00298840 Rroxscaffold_4G00298890 Rroxscaffold_4G00298900 Rroxscaffold_4G00298930 Rroxscaffold_4G00298960 Rroxscaffold_4G00299220 Rroxscaffold_5G00344530 Rroxscaffold_5G00353770 Rroxscaffold_5G00358640 Rroxscaffold_7G00202240 Rroxscaffold_7G00209000
rosa_rugosa Rorug01G0218600 Rorug01G0251800 Rorug01G0255100 Rorug01G0255200 Rorug01G0255500 Rorug01G0255700 Rorug01G0256400 Rorug01G0276200 Rorug01G0322400 Rorug02G0150200 Rorug02G0150300 Rorug02G0150400 Rorug02G0150700 Rorug02G0150800 Rorug02G0150900 Rorug02G0151000 Rorug02G0151100 Rorug02G0166000 Rorug02G0166100.1 Rorug02G0176300 Rorug02G0176400 Rorug02G0176700 Rorug03G0192200 Rorug03G0193100 Rorug04G0017700 Rorug04G0331400 Rorug05G0129400 Rorug05G0131900 Rorug05G0132200 Rorug05G0132300 Rorug05G0132300 Rorug05G0132400 Rorug05G0132500 Rorug05G0132600 Rorug05G0132700 Rorug05G0132800 Rorug05G0132900 Rorug05G0164000 Rorug05G0164000 Rorug05G0186700 Rorug05G0187000 Rorug05G0323000 Rorug05G0323000 Rorug05G0567400 Rorug07G0136000 Rorug07G0159500
rosa_samantha Rh1CG249900 Rh1CG253000 Rh1DG261400 Rh1DG264400 Rh1DG264800 Rh1DG264900 Rh1DG265600 Rh2AG218700 Rh2AG228900 Rh2AG229000 Rh2BG227800 Rh2BG241900 Rh2BG297700 Rh2DG224600 Rh2DG225000 Rh2DG236900 Rh3AG243400 Rh3CG273500 Rh4DG088000 Rh5CG246800 Rh5CG247800 Rh5CG252000 Rh5CG252100 Rh5CG252200 Rh5CG252500 Rh5CG252600 Rh5CG252800 Rh5CG253100 Rh5CG253200 Rh5CG253300 Rh5CG253900 Rh5CG254100 Rh5CG288700 Rh5CG288800 Rh5CG309700 Rh5CG309800 Rh5DG415100 Rh6BG078900 Rh6BG142900 Rh6CG073600 Rh6CG139500 Rh7CG210700
rosa_wichuraiana Rw0G015410 Rw1G023790 Rw1G023810 Rw1G023830 Rw1G023890 Rw1G023960 Rw1G024030 Rw1G024060 Rw1G024080 Rw1G024100 Rw2G015830 Rw2G015870 Rw2G015890 Rw2G016830 Rw2G016870 Rw2G016890 Rw2G017700 Rw2G017710 Rw2G017730 Rw3G021740 Rw3G026100 Rw4G007870 Rw5G020370 Rw5G020560 Rw5G020590 Rw5G020610 Rw5G020620 Rw5G020640 Rw5G020660 Rw5G023440 Rw5G023480 Rw5G025580 Rw5G025610 Rw5G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 591, 636
AatII GACGTC 1 cut(s) 534
AccB1I GGYRCC 1 cut(s) 1254
AccBSI CCGCTC 1 cut(s) 560
AccI GTMKAC 2 cut(s) 498, 1216
AccIII TCCGGA 1 cut(s) 1385
AciI CCGC 8 cut(s) 257, 318, 558, 767, 842, 852, 921, 1745
AclWI GGATC 2 cut(s) 497, 995
AcoI YGGCCR 2 cut(s) 1746, 1917
AcsI RAATTY 4 cut(s) 811, 1468, 1734, 1769
AcuI CTGAAG 2 cut(s) 1179, 1917
AcyI GRCGYC 1 cut(s) 531
AfaI GTAC 3 cut(s) 295, 681, 1425
AfiI CCNNNNNNNGG 5 cut(s) 232, 317, 454, 564, 1485
AflIII ACRYGT 1 cut(s) 517
AhdI GACNNNNNGTC 2 cut(s) 881, 1212
AhlI ACTAGT 1 cut(s) 671
AloI GAACNNNNNNTCC 2 cut(s) 210, 242
Alw21I GWGCWC 1 cut(s) 10
AlwI GGATC 2 cut(s) 497, 995
Aor13HI TCCGGA 1 cut(s) 1385
AoxI GGCC 7 cut(s) 394, 663, 1015, 1380, 1746, 1841, 1917
ApeKI GCWGC 1 cut(s) 1305
ApoI RAATTY 4 cut(s) 811, 1468, 1734, 1769
AspLEI GCGC 2 cut(s) 19, 1930
AspS9I GGNCC 3 cut(s) 875, 1016, 1513
AsuHPI GGTGA 4 cut(s) 146, 188, 332, 418
AsuNHI GCTAGC 1 cut(s) 1595
AvaII GGWCC 2 cut(s) 875, 1513
BaeI ACNNNNGTAYC 2 cut(s) 1379, 1412
BalI TGGCCA 1 cut(s) 1919
BanI GGYRCC 1 cut(s) 1254
BauI CACGAG 1 cut(s) 1508
Bbv12I GWGCWC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 1317
BccI CCATC 9 cut(s) 293, 317, 410, 962, 977, 1326, 1670, 1909, 1909
BclI TGATCA 1 cut(s) 1684
BcuI ACTAGT 1 cut(s) 671
BfaI CTAG 8 cut(s) 11, 20, 182, 341, 549, 672, 1170, 1596
BfmI CTRYAG 2 cut(s) 364, 1615
BfoI RGCGCY 1 cut(s) 20
BisI GCNGC 3 cut(s) 768, 1306, 1746
BlsI GCNGC 3 cut(s) 769, 1307, 1747
Bme18I GGWCC 2 cut(s) 875, 1513
BmeRI GACNNNNNGTC 2 cut(s) 881, 1212
BmgT120I GGNCC 3 cut(s) 875, 1016, 1513
BmiI GGNNCC 4 cut(s) 385, 1256, 1552, 1569
BmrI ACTGGG 1 cut(s) 686
BmsI GCATC 3 cut(s) 118, 534, 1234
BmtI GCTAGC 1 cut(s) 1599
BmuI ACTGGG 1 cut(s) 686
BpmI CTGGAG 2 cut(s) 402, 1554
Bsa29I ATCGAT 1 cut(s) 1665
BsaHI GRCGYC 1 cut(s) 531
BsaJI CCNNGG 5 cut(s) 563, 1161, 1516, 1554, 1584
BsaWI WCCGGW 1 cut(s) 1385
BsaXI ACNNNNNCTCC 6 cut(s) 43, 73, 210, 240, 597, 627
Bsc4I CCNNNNNNNGG 5 cut(s) 232, 317, 454, 564, 1485
Bse1I ACTGG 4 cut(s) 387, 692, 878, 1972
BseAI TCCGGA 1 cut(s) 1385
BseCI ATCGAT 1 cut(s) 1665
BseDI CCNNGG 5 cut(s) 563, 1161, 1516, 1554, 1584
BseGI GGATG 2 cut(s) 748, 1901
BseLI CCNNNNNNNGG 5 cut(s) 232, 317, 454, 564, 1485
BseMII CTCAG 2 cut(s) 716, 1704
BseNI ACTGG 4 cut(s) 387, 692, 878, 1972
BseX3I CGGCCG 1 cut(s) 1746
BseXI GCAGC 1 cut(s) 1317
BseYI CCCAGC 1 cut(s) 506
Bsh1285I CGRYCG 1 cut(s) 1749
BshFI GGCC 7 cut(s) 396, 665, 1017, 1382, 1748, 1843, 1919
BshNI GGYRCC 1 cut(s) 1254
BshVI ATCGAT 1 cut(s) 1665
BsiEI CGRYCG 1 cut(s) 1749
BsiHKAI GWGCWC 1 cut(s) 10
BsiSI CCGG 2 cut(s) 740, 1386
BslFI GGGAC 2 cut(s) 248, 416
BslI CCNNNNNNNGG 5 cut(s) 232, 317, 454, 564, 1485
BsmFI GGGAC 2 cut(s) 248, 416
BsnI GGCC 7 cut(s) 396, 665, 1017, 1382, 1748, 1843, 1919
Bsp1286I GDGCHC 1 cut(s) 10
Bsp13I TCCGGA 1 cut(s) 1385
Bsp1407I TGTACA 1 cut(s) 679
Bsp143I GATC 5 cut(s) 502, 721, 798, 987, 1684
Bsp19I CCATGG 2 cut(s) 1516, 1554
BspACI CCGC 8 cut(s) 257, 318, 558, 767, 842, 852, 921, 1745
BspANI GGCC 7 cut(s) 396, 665, 1017, 1382, 1748, 1843, 1919
BspCNI CTCAG 2 cut(s) 717, 1705
BspDI ATCGAT 1 cut(s) 1665
BspEI TCCGGA 1 cut(s) 1385
BspLI GGNNCC 4 cut(s) 385, 1256, 1552, 1569
BspOI GCTAGC 1 cut(s) 1599
BspPI GGATC 2 cut(s) 497, 995
BspT107I GGYRCC 1 cut(s) 1254
BsrBI CCGCTC 1 cut(s) 560
BsrGI TGTACA 1 cut(s) 679
BsrI ACTGG 4 cut(s) 387, 692, 878, 1972
BssECI CCNNGG 5 cut(s) 563, 1161, 1516, 1554, 1584
BssMI GATC 5 cut(s) 502, 721, 798, 987, 1684
BssNI GRCGYC 1 cut(s) 531
BssSI CACGAG 1 cut(s) 1508
BssT1I CCWWGG 4 cut(s) 563, 1161, 1516, 1554
Bst2BI CACGAG 1 cut(s) 1508
Bst6I CTCTTC 2 cut(s) 85, 431
BstACI GRCGYC 1 cut(s) 531
BstAPI GCANNNNNTGC 1 cut(s) 736
BstAUI TGTACA 1 cut(s) 679
BstC8I GCNNGC 3 cut(s) 737, 1597, 1796
BstDEI CTNAG 6 cut(s) 656, 725, 1202, 1220, 1309, 1713
BstDSI CCRYGG 3 cut(s) 1516, 1554, 1584
BstEII GGTNACC 1 cut(s) 140
BstF5I GGATG 2 cut(s) 748, 1901
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 2 cut(s) 19, 1930
BstKTI GATC 5 cut(s) 505, 724, 801, 990, 1687
BstMBI GATC 5 cut(s) 502, 721, 798, 987, 1684
BstMCI CGRYCG 1 cut(s) 1749
BstMWI GCNNNNNNNGC 3 cut(s) 14, 736, 1925
BstPI GGTNACC 1 cut(s) 140
BstSFI CTRYAG 2 cut(s) 364, 1615
BstV1I GCAGC 1 cut(s) 1317
BstXI CCANNNNNNTGG 1 cut(s) 885
BstZI CGGCCG 1 cut(s) 1746
Bsu15I ATCGAT 1 cut(s) 1665
BsuRI GGCC 7 cut(s) 396, 665, 1017, 1382, 1748, 1843, 1919
BsuTUI ATCGAT 1 cut(s) 1665
BtgI CCRYGG 3 cut(s) 1516, 1554, 1584
BtsCI GGATG 2 cut(s) 748, 1901
BtsI GCAGTG 2 cut(s) 465, 737
BtsIMutI CAGTG 5 cut(s) 97, 465, 699, 737, 1042
Cac8I GCNNGC 3 cut(s) 737, 1597, 1796
CfoI GCGC 2 cut(s) 19, 1930
Cfr13I GGNCC 3 cut(s) 875, 1016, 1513
ClaI ATCGAT 1 cut(s) 1665
Csp6I GTAC 3 cut(s) 294, 680, 1424
CviAII CATG 6 cut(s) 572, 683, 1259, 1517, 1555, 1564
CviQI GTAC 3 cut(s) 294, 680, 1424
DdeI CTNAG 6 cut(s) 656, 725, 1202, 1220, 1309, 1713
DpnI GATC 5 cut(s) 504, 723, 800, 989, 1686
DpnII GATC 5 cut(s) 502, 721, 798, 987, 1684
DriI GACNNNNNGTC 2 cut(s) 881, 1212
EaeI YGGCCR 2 cut(s) 1746, 1917
EagI CGGCCG 1 cut(s) 1746
Eam1104I CTCTTC 2 cut(s) 85, 431
Eam1105I GACNNNNNGTC 2 cut(s) 881, 1212
EarI CTCTTC 2 cut(s) 85, 431
EciI GGCGGA 2 cut(s) 272, 831
EclXI CGGCCG 1 cut(s) 1746
Eco130I CCWWGG 4 cut(s) 563, 1161, 1516, 1554
Eco147I AGGCCT 1 cut(s) 1843
Eco32I GATATC 2 cut(s) 472, 1158
Eco47I GGWCC 2 cut(s) 875, 1513
Eco52I CGGCCG 1 cut(s) 1746
Eco57I CTGAAG 2 cut(s) 1179, 1917
Eco91I GGTNACC 1 cut(s) 140
EcoO65I GGTNACC 1 cut(s) 140
EcoRV GATATC 2 cut(s) 472, 1158
EcoT14I CCWWGG 4 cut(s) 563, 1161, 1516, 1554
EcoT22I ATGCAT 1 cut(s) 795
ErhI CCWWGG 4 cut(s) 563, 1161, 1516, 1554
FaeI CATG 6 cut(s) 575, 686, 1262, 1520, 1558, 1567
FalI AAGNNNNNCTT 1 cut(s) 1982
FaqI GGGAC 2 cut(s) 248, 416
FatI CATG 6 cut(s) 571, 682, 1258, 1516, 1554, 1563
FauI CCCGC 2 cut(s) 859, 914
FauNDI CATATG 1 cut(s) 349
FbaI TGATCA 1 cut(s) 1684
FblI GTMKAC 2 cut(s) 498, 1216
Fnu4HI GCNGC 3 cut(s) 768, 1306, 1746
FokI GGATG 2 cut(s) 755, 1888
Fsp4HI GCNGC 3 cut(s) 768, 1306, 1746
FspBI CTAG 8 cut(s) 11, 20, 182, 341, 549, 672, 1170, 1596
GlaI GCGC 2 cut(s) 18, 1929
GluI GCNGC 3 cut(s) 768, 1306, 1746
GsaI CCCAGC 1 cut(s) 510
GsuI CTGGAG 2 cut(s) 402, 1554
HaeII RGCGCY 1 cut(s) 20
HaeIII GGCC 7 cut(s) 396, 665, 1017, 1382, 1748, 1843, 1919
HapII CCGG 2 cut(s) 740, 1386
HhaI GCGC 2 cut(s) 19, 1930
Hin1I GRCGYC 1 cut(s) 531
Hin1II CATG 6 cut(s) 575, 686, 1262, 1520, 1558, 1567
Hin6I GCGC 2 cut(s) 17, 1928
HinP1I GCGC 2 cut(s) 17, 1928
HincII GTYRAC 2 cut(s) 535, 1217
HindII GTYRAC 2 cut(s) 535, 1217
HindIII AAGCTT 2 cut(s) 1079, 1336
HinfI GANTC 9 cut(s) 439, 568, 778, 835, 1166, 1463, 1506, 1604, 1667
HpaII CCGG 2 cut(s) 740, 1386
HphI GGTGA 4 cut(s) 146, 188, 332, 418
Hpy188I TCNGA 4 cut(s) 726, 1198, 1609, 1714
Hpy188III TCNNGA 5 cut(s) 433, 1170, 1386, 1571, 1739
Hpy99I CGWCG 1 cut(s) 533
HpyCH4IV ACGT 4 cut(s) 423, 519, 531, 714
HpyCH4V TGCA 5 cut(s) 793, 1003, 1067, 1240, 1724
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 736, 1925
HpyF3I CTNAG 6 cut(s) 656, 725, 1202, 1220, 1309, 1713
HpySE526I ACGT 4 cut(s) 423, 519, 531, 714
Hsp92I GRCGYC 1 cut(s) 531
Hsp92II CATG 6 cut(s) 575, 686, 1262, 1520, 1558, 1567
HspAI GCGC 2 cut(s) 17, 1928
Kpn2I TCCGGA 1 cut(s) 1385
Ksp22I TGATCA 1 cut(s) 1684
Kzo9I GATC 5 cut(s) 502, 721, 798, 987, 1684
LmnI GCTCC 4 cut(s) 377, 383, 565, 1573
Lsp1109I GCAGC 1 cut(s) 1317
LweI GCATC 3 cut(s) 118, 534, 1234
MaeI CTAG 8 cut(s) 11, 20, 182, 341, 549, 672, 1170, 1596
MaeII ACGT 4 cut(s) 423, 519, 531, 714
MaeIII GTNAC 3 cut(s) 140, 424, 1820
MalI GATC 5 cut(s) 504, 723, 800, 989, 1686
MbiI CCGCTC 1 cut(s) 560
MboI GATC 5 cut(s) 502, 721, 798, 987, 1684
MboII GAAGA 6 cut(s) 25, 72, 328, 448, 590, 1418
MhlI GDGCHC 1 cut(s) 10
MlsI TGGCCA 1 cut(s) 1919
MluNI TGGCCA 1 cut(s) 1919
MlyI GAGTC 3 cut(s) 448, 1175, 1500
MmeI TCCRAC 2 cut(s) 1440, 1786
Mox20I TGGCCA 1 cut(s) 1919
Mph1103I ATGCAT 1 cut(s) 795
MroI TCCGGA 1 cut(s) 1385
MscI TGGCCA 1 cut(s) 1919
MseI TTAA 7 cut(s) 50, 65, 116, 1149, 1292, 1440, 1872
MslI CAYNNNNRTG 1 cut(s) 1230
Msp20I TGGCCA 1 cut(s) 1919
MspI CCGG 2 cut(s) 740, 1386
MwoI GCNNNNNNNGC 3 cut(s) 14, 736, 1925
NcoI CCATGG 2 cut(s) 1516, 1554
NdeI CATATG 1 cut(s) 349
NdeII GATC 5 cut(s) 502, 721, 798, 987, 1684
NheI GCTAGC 1 cut(s) 1595
NlaIII CATG 6 cut(s) 575, 686, 1262, 1520, 1558, 1567
NlaIV GGNNCC 4 cut(s) 385, 1256, 1552, 1569
NmuCI GTSAC 2 cut(s) 424, 1820
NsiI ATGCAT 1 cut(s) 795
PceI AGGCCT 1 cut(s) 1843
PcsI WCGNNNNNNNCGW 2 cut(s) 525, 1746
PfeI GAWTC 6 cut(s) 568, 778, 835, 1463, 1604, 1667
PkrI GCNGC 3 cut(s) 769, 1307, 1747
PleI GAGTC 3 cut(s) 447, 1174, 1500
PpsI GAGTC 3 cut(s) 447, 1174, 1500
PsiI TTATAA 2 cut(s) 591, 636
PspEI GGTNACC 1 cut(s) 140
PspFI CCCAGC 1 cut(s) 506
PspN4I GGNNCC 4 cut(s) 385, 1256, 1552, 1569
PspPI GGNCC 3 cut(s) 875, 1016, 1513
PsrI GAACNNNNNNTAC 2 cut(s) 1407, 1439
RsaI GTAC 3 cut(s) 295, 681, 1425
RsaNI GTAC 3 cut(s) 294, 680, 1424
RseI CAYNNNNRTG 1 cut(s) 1230
SalI GTCGAC 1 cut(s) 1215
SaqAI TTAA 7 cut(s) 50, 65, 116, 1149, 1292, 1440, 1872
SatI GCNGC 3 cut(s) 768, 1306, 1746
Sau3AI GATC 5 cut(s) 502, 721, 798, 987, 1684
Sau96I GGNCC 3 cut(s) 875, 1016, 1513
SchI GAGTC 3 cut(s) 448, 1175, 1500
SduI GDGCHC 1 cut(s) 10
SfaNI GCATC 3 cut(s) 118, 534, 1234
SfcI CTRYAG 2 cut(s) 364, 1615
SinI GGWCC 2 cut(s) 875, 1513
SmiMI CAYNNNNRTG 1 cut(s) 1230
SpeI ACTAGT 1 cut(s) 671
SseBI AGGCCT 1 cut(s) 1843
SsiI CCGC 8 cut(s) 257, 318, 558, 767, 842, 852, 921, 1745
SspMI CTAG 8 cut(s) 11, 20, 182, 341, 549, 672, 1170, 1596
StuI AGGCCT 1 cut(s) 1843
StyI CCWWGG 4 cut(s) 563, 1161, 1516, 1554
TaiI ACGT 4 cut(s) 426, 522, 534, 717
TaqI TCGA 9 cut(s) 202, 528, 1216, 1228, 1504, 1665, 1740, 1847, 1913
TatI WGTACW 3 cut(s) 293, 679, 1423
TauI GCSGC 2 cut(s) 770, 1748
TfiI GAWTC 6 cut(s) 568, 778, 835, 1463, 1604, 1667
Tru1I TTAA 7 cut(s) 50, 65, 116, 1149, 1292, 1440, 1872
Tru9I TTAA 7 cut(s) 50, 65, 116, 1149, 1292, 1440, 1872
TscAI CASTG 5 cut(s) 97, 465, 699, 737, 1042
TseFI GTSAC 2 cut(s) 424, 1820
TseI GCWGC 1 cut(s) 1305
Tsp45I GTSAC 2 cut(s) 424, 1820
TspDTI ATGAA 6 cut(s) 573, 624, 1011, 1108, 1275, 1929
TspRI CASTG 5 cut(s) 97, 465, 699, 737, 1042
VpaK11BI GGWCC 2 cut(s) 875, 1513
XapI RAATTY 4 cut(s) 811, 1468, 1734, 1769
XbaI TCTAGA 1 cut(s) 1169
XcmI CCANNNNNNNNNTGG 3 cut(s) 250, 1561, 1912
XmiI GTMKAC 2 cut(s) 498, 1216
XspI CTAG 8 cut(s) 11, 20, 182, 341, 549, 672, 1170, 1596
ZraI GACGTC 1 cut(s) 532
Zsp2I ATGCAT 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.