MD08G1054200.v1.1

L-type lectin-domain containing receptor kinase IX.1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
4252028 .. 4254139
2112 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1054200.v1.1.491

Sequence Viewer

Length: 825 bp
ATGCCTAACAGTAGCCTCGACATGCATTTATTTGGCCCTAGAACAACGTTGCAATGGGACCGGAGGTATGACATAGCGATAGGATTGGCCTTGGCGCTTCATTACCTACATGAAGGCGCAGAGCAGTGTGTCCTTCACAGGGATATCAAAGCAGCTAATATATTGTTGGACAATGATTTCAAAACTAAGCTTGGTGATTTTGGGGTTGCGAAGCTTGTAGATCCCCAGTCCCGGTCCAAGACCCATCACACTACTAGAGTGGCAGGTACTCACGGCTACATTGCCCCCGAATACGCAAACGAAGGGAGGGCCAGCAAAGAATCGGACATGTTTAGTTTTGGCGTTGTGGCCTTGGAAATTGCTTGTGGAAGGAAGCCTTACCTGCATGGTGAAAGCTTCCAAGGGCCGCTTTATGAGTGGGTTTGGCAACTATATGTTGCGGGAAATCTACTCGGTGCAGCGGATGAGGCGTTGCGAATGGATTTTGATCAGTATGAAATGGAACGCTTGTTAATGGTGGGGTTATGGTGCACTCACTACAACAAGGAGAGAAGGCCAAAAGCAGGGGAAGTGGTGAAGGTCCTTCAGCTTGAAGCACCACTGCCTGAGCTTCCAGAAGAACGACCTCACCATCCTCTGCCGTTCTTACCTTTTAAGGTTTATAGAGGGGTTTGGACATATGTCCACCCAATATTTTTCTTGTATTTTCTTTTTCAAGAGGGGTATGGTCTATGTCCCCCCCCCCTCTTTTTTCTCGTATTTTGTTTTTCAAAAAGGGTAAGGTGTTTATCCCCCTCTTTGTATTTCGTTTTTCTTGTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

275

Amino Acids

31.54

Weight (kDa)

6.63

Isoelectric Point (pI)

44.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 194 7.3e-25 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 15 - 132 1.3e-26 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10530 AT5G65600
fragaria_vesca FvH4_1g17770 FvH4_1g19171 FvH4_1g19180 FvH4_1g19922 FvH4_1g19923 FvH4_1g19940 FvH4_1g19950 FvH4_3g19030 FvH4_3g19040 FvH4_3g19350 FvH4_3g19361 FvH4_3g19370 FvH4_3g19372 FvH4_3g19390 FvH4_3g19390 FvH4_3g19400 FvH4_3g19400 FvH4_3g23100 FvH4_3g32500 FvH4_3g39140 FvH4_4g12891 FvH4_4g12900 FvH4_5g13890 FvH4_6g23490 FvH4_7g14930 FvH4_7g14950 FvH4_7g15082 FvH4_7g16980
malus_domestica MD01G1043400.v1.1 MD01G1043500.v1.1 MD03G1232800.v1.1 MD03G1232900.v1.1 MD03G1233000.v1.1 MD03G1233100.v1.1 MD03G1233200.v1.1 MD03G1233300.v1.1 MD03G1233600.v1.1 MD03G1233700.v1.1 MD03G1233900.v1.1 MD03G1234100.v1.1 MD03G1234300.v1.1 MD03G1234400.v1.1 MD03G1234500.v1.1 MD03G1234600.v1.1 MD08G1053200.v1.1 MD08G1053400.v1.1 MD08G1053500.v1.1 MD08G1053600.v1.1 MD08G1053800.v1.1 MD08G1053900.v1.1 MD08G1054000.v1.1 MD08G1054100.v1.1 MD08G1054200.v1.1 MD08G1054400.v1.1 MD08G1054600.v1.1 MD09G1175200.v1.1 MD09G1289800.v1.1 MD09G1289900.v1.1 MD11G1253600.v1.1 MD11G1254300.v1.1 MD11G1254500.v1.1 MD11G1254900.v1.1 MD11G1255100.v1.1 MD15G1042500.v1.1 MD15G1053100.v1.1 MD15G1053200.v1.1 MD15G1307500.v1.1
prunus_persica Prupe.1G157800_v2.0.a1 Prupe.1G395700_v2.0.a1 Prupe.4G174600_v2.0.a1 Prupe.4G174800_v2.0.a1 Prupe.4G174900_v2.0.a1 Prupe.4G175000_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175300_v2.0.a1 Prupe.4G175400_v2.0.a1 Prupe.4G175500_v2.0.a1 Prupe.4G175600_v2.0.a1 Prupe.4G175700_v2.0.a1 Prupe.4G241200_v2.0.a1 Prupe.6G208500_v2.0.a1 Prupe.6G208700_v2.0.a1 Prupe.6G208800_v2.0.a1 Prupe.8G117500_v2.0.a1 Prupe.I004200_v2.0.a1 Prupe.I004300_v2.0.a1
pyrus_communis pycom03g18010 pycom03g18050 pycom03g18070 pycom03g18100 pycom08g04440 pycom09g19760 pycom11g22500 pycom11g22510 pycom11g22520
rosa_chinensis RchiOBHm_Chr1g0318811 RchiOBHm_Chr1g0329471 RchiOBHm_Chr1g0340841 RchiOBHm_Chr1g0340931 RchiOBHm_Chr1g0356861 RchiOBHm_Chr1g0357251 RchiOBHm_Chr1g0357261 RchiOBHm_Chr1g0357321 RchiOBHm_Chr1g0360231 RchiOBHm_Chr1g0365521 RchiOBHm_Chr1g0365571 RchiOBHm_Chr1g0365581 RchiOBHm_Chr2g0108101 RchiOBHm_Chr2g0108131 RchiOBHm_Chr2g0108161 RchiOBHm_Chr2g0108191 RchiOBHm_Chr2g0108201 RchiOBHm_Chr2g0110211 RchiOBHm_Chr2g0110221 RchiOBHm_Chr2g0110261 RchiOBHm_Chr2g0110301 RchiOBHm_Chr2g0111801 RchiOBHm_Chr2g0111821 RchiOBHm_Chr2g0128081 RchiOBHm_Chr2g0151141 RchiOBHm_Chr3g0469441 RchiOBHm_Chr3g0481491 RchiOBHm_Chr4g0399611 RchiOBHm_Chr4g0414891 RchiOBHm_Chr5g0031941 RchiOBHm_Chr5g0032011 RchiOBHm_Chr5g0032051 RchiOBHm_Chr5g0032101 RchiOBHm_Chr5g0032421 RchiOBHm_Chr5g0032461 RchiOBHm_Chr5g0032481 RchiOBHm_Chr5g0032541 RchiOBHm_Chr5g0032571 RchiOBHm_Chr5g0032591 RchiOBHm_Chr5g0032631 RchiOBHm_Chr5g0037251 RchiOBHm_Chr5g0037271 RchiOBHm_Chr5g0037281 RchiOBHm_Chr5g0037291 RchiOBHm_Chr5g0040701 RchiOBHm_Chr5g0040731 RchiOBHm_Chr5g0059491 RchiOBHm_Chr6g0257841 RchiOBHm_Chr6g0274701 RchiOBHm_Chr7g0212711
rosa_laevigata RLG00000002585 RLG00000002586 RLG00000008111 RLG00000009258 RLG00000012123 RLG00000014148 RLG00000014734 RLG00000017640 RLG00000017642 RLG00000017645 RLG00000017646 RLG00000017795 RLG00000017796 RLG00000017925 RLG00000017926 RLG00000020068 RLG00000023393 RLG00000024495 RLG00000028027 RLG00000028033 RLG00000028034 RLG00000028035 RLG00000028037 RLG00000028040 RLG00000028041 RLG00000028072 RLG00000028159 RLG00000028160 RLG00000033360 RLG00000033399 RLG00000033401 RLG00000033402 RLG00000033403 RLG00000033404 RLG00000033405 RLG00000033407 RLG00000033408 RLG00000033411 RLG00000033414 RLG00000033470 RLG00000033769 RLG00000033772 RLG00000033997
rosa_multiflora Rmu_co8044118.1_g000001 Rmu_co8077552.1_g000001 Rmu_co8082100.1_g000001 Rmu_co8171646.1_g000001 Rmu_co8225604.1_g000001 Rmu_co8285705.1_g000001 Rmu_co8296369.1_g000001 Rmu_co8319685.1_g000001 Rmu_co8326977.1_g000001 Rmu_co8421957.1_g000001 Rmu_co8457997.1_g000001 Rmu_co8464379.1_g000001 Rmu_co8466539.1_g000001 Rmu_sc0000055.1_g000016 Rmu_sc0000064.1_g000032 Rmu_sc0000316.1_g000004 Rmu_sc0000316.1_g000010 Rmu_sc0000316.1_g000011 Rmu_sc0000394.1_g000016 Rmu_sc0001017.1_g000022 Rmu_sc0001484.1_g000003 Rmu_sc0002530.1_g000028 Rmu_sc0002530.1_g000031 Rmu_sc0002530.1_g000035 Rmu_sc0002587.1_g000043 Rmu_sc0002719.1_g000003 Rmu_sc0002719.1_g000005 Rmu_sc0002964.1_g000011 Rmu_sc0003031.1_g000001 Rmu_sc0003031.1_g000014 Rmu_sc0003031.1_g000027 Rmu_sc0003031.1_g000053 Rmu_sc0003552.1_g000003 Rmu_sc0003656.1_g000001 Rmu_sc0003916.1_g000001 Rmu_sc0003916.1_g000003 Rmu_sc0004100.1_g000001 Rmu_sc0004129.1_g000008 Rmu_sc0004365.1_g000001 Rmu_sc0004365.1_g000002 Rmu_sc0004542.1_g000017 Rmu_sc0004792.1_g000029 Rmu_sc0004792.1_g000032 Rmu_sc0004792.1_g000034 Rmu_sc0004792.1_g000035 Rmu_sc0004927.1_g000003 Rmu_sc0004927.1_g000005 Rmu_sc0004927.1_g000013 Rmu_sc0004927.1_g000023 Rmu_sc0005002.1_g000009 Rmu_sc0005002.1_g000028 Rmu_sc0005278.1_g000024 Rmu_sc0005278.1_g000025 Rmu_sc0005375.1_g000022 Rmu_sc0005728.1_g000005 Rmu_sc0005728.1_g000007 Rmu_sc0005770.1_g000017 Rmu_sc0005808.1_g000002 Rmu_sc0005808.1_g000004 Rmu_sc0006798.1_g000002 Rmu_sc0006798.1_g000003 Rmu_sc0006798.1_g000006 Rmu_sc0006798.1_g000007 Rmu_sc0006798.1_g000011 Rmu_sc0007406.1_g000014 Rmu_sc0007406.1_g000025 Rmu_sc0007965.1_g000011 Rmu_sc0009840.1_g000001 Rmu_sc0011812.1_g000005 Rmu_sc0015491.1_g000002 Rmu_sc0019008.1_g000001 Rmu_sc0019103.1_g000001 Rmu_sc0020236.1_g000002 Rmu_sc0021706.1_g000002 Rmu_sc0022958.1_g000008 Rmu_sc0026238.1_g000001 Rmu_sc0032550.1_g000001 Rmu_sc0034983.1_g000001 Rmu_sc0039890.1_g000002 Rmu_sc0041272.1_g000001 Rmu_sc0041373.1_g000001 Rmu_ssc0000100.1_g000012 Rmu_ssc0000100.1_g000017 Rmu_ssc0000100.1_g000031 Rmu_ssc0000100.1_g000033 Rmu_ssc0000386.1_g000042
rosa_roxburghii Rroxscaffold_1G00039940 Rroxscaffold_1G00039970 Rroxscaffold_1G00039980 Rroxscaffold_1G00043650 Rroxscaffold_1G00043700 Rroxscaffold_1G00047420 Rroxscaffold_1G00047430 Rroxscaffold_1G00047450 Rroxscaffold_1G00047470 Rroxscaffold_1G00047480 Rroxscaffold_1G00047500 Rroxscaffold_1G00047510 Rroxscaffold_1G00047520 Rroxscaffold_1G00047540 Rroxscaffold_1G00047570 Rroxscaffold_1G00047690 Rroxscaffold_1G00047720 Rroxscaffold_1G00047730 Rroxscaffold_1G00047740 Rroxscaffold_1G00047880 Rroxscaffold_1G00047900 Rroxscaffold_1G00047910 Rroxscaffold_1G00047920 Rroxscaffold_1G00047940 Rroxscaffold_1G00047950 Rroxscaffold_1G00047970 Rroxscaffold_1G00047980 Rroxscaffold_1G00048000 Rroxscaffold_2G00132060 Rroxscaffold_2G00132100 Rroxscaffold_2G00132110 Rroxscaffold_2G00133580 Rroxscaffold_2G00133630 Rroxscaffold_2G00133640 Rroxscaffold_2G00135480 Rroxscaffold_2G00135490 Rroxscaffold_2G00135530 Rroxscaffold_2G00135600 Rroxscaffold_2G00135630 Rroxscaffold_4G00291170 Rroxscaffold_4G00296260 Rroxscaffold_4G00296270 Rroxscaffold_4G00298840 Rroxscaffold_4G00298890 Rroxscaffold_4G00298900 Rroxscaffold_4G00298930 Rroxscaffold_4G00298960 Rroxscaffold_4G00299220 Rroxscaffold_5G00344530 Rroxscaffold_5G00353770 Rroxscaffold_5G00358640 Rroxscaffold_7G00202240 Rroxscaffold_7G00209000
rosa_rugosa Rorug01G0218600 Rorug01G0251800 Rorug01G0255100 Rorug01G0255200 Rorug01G0255500 Rorug01G0255700 Rorug01G0256400 Rorug01G0276200 Rorug01G0322400 Rorug02G0150200 Rorug02G0150300 Rorug02G0150400 Rorug02G0150700 Rorug02G0150800 Rorug02G0150900 Rorug02G0151000 Rorug02G0151100 Rorug02G0166000 Rorug02G0166100.1 Rorug02G0176300 Rorug02G0176400 Rorug02G0176700 Rorug03G0192200 Rorug03G0193100 Rorug04G0017700 Rorug04G0331400 Rorug05G0129400 Rorug05G0131900 Rorug05G0132200 Rorug05G0132300 Rorug05G0132300 Rorug05G0132400 Rorug05G0132500 Rorug05G0132600 Rorug05G0132700 Rorug05G0132800 Rorug05G0132900 Rorug05G0164000 Rorug05G0164000 Rorug05G0186700 Rorug05G0187000 Rorug05G0323000 Rorug05G0323000 Rorug05G0567400 Rorug07G0136000 Rorug07G0159500
rosa_samantha Rh1CG249900 Rh1CG253000 Rh1DG261400 Rh1DG264400 Rh1DG264800 Rh1DG264900 Rh1DG265600 Rh2AG218700 Rh2AG228900 Rh2AG229000 Rh2BG227800 Rh2BG241900 Rh2BG297700 Rh2DG224600 Rh2DG225000 Rh2DG236900 Rh3AG243400 Rh3CG273500 Rh4DG088000 Rh5CG246800 Rh5CG247800 Rh5CG252000 Rh5CG252100 Rh5CG252200 Rh5CG252500 Rh5CG252600 Rh5CG252800 Rh5CG253100 Rh5CG253200 Rh5CG253300 Rh5CG253900 Rh5CG254100 Rh5CG288700 Rh5CG288800 Rh5CG309700 Rh5CG309800 Rh5DG415100 Rh6BG078900 Rh6BG142900 Rh6CG073600 Rh6CG139500 Rh7CG210700
rosa_wichuraiana Rw0G015410 Rw1G023790 Rw1G023810 Rw1G023830 Rw1G023890 Rw1G023960 Rw1G024030 Rw1G024060 Rw1G024080 Rw1G024100 Rw2G015830 Rw2G015870 Rw2G015890 Rw2G016830 Rw2G016870 Rw2G016890 Rw2G017700 Rw2G017710 Rw2G017730 Rw3G021740 Rw3G026100 Rw4G007870 Rw5G020370 Rw5G020560 Rw5G020590 Rw5G020610 Rw5G020620 Rw5G020640 Rw5G020660 Rw5G023440 Rw5G023480 Rw5G025580 Rw5G025610 Rw5G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 254, 390
AciI CCGC 3 cut(s) 407, 440, 461
AclI AACGTT 1 cut(s) 47
AclWI GGATC 1 cut(s) 215
AcuI CTGAAG 1 cut(s) 569
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 3 cut(s) 139, 231, 563
AflIII ACRYGT 1 cut(s) 327
AgsI TTSAA 4 cut(s) 181, 593, 716, 771
AluBI AGCT 6 cut(s) 155, 190, 214, 396, 589, 610
AluI AGCT 6 cut(s) 155, 190, 214, 396, 589, 610
Alw21I GWGCWC 1 cut(s) 533
Alw44I GTGCAC 1 cut(s) 529
AlwI GGATC 1 cut(s) 215
AoxI GGCC 6 cut(s) 34, 87, 309, 348, 404, 554
ApaLI GTGCAC 1 cut(s) 529
ApeKI GCWGC 2 cut(s) 152, 458
AspLEI GCGC 2 cut(s) 97, 119
AspS9I GGNCC 6 cut(s) 35, 58, 234, 309, 404, 580
AsuC2I CCSGG 1 cut(s) 232
AsuHPI GGTGA 4 cut(s) 206, 401, 586, 620
AvaII GGWCC 3 cut(s) 58, 234, 580
BaeGI GKGCMC 1 cut(s) 533
Bbv12I GWGCWC 1 cut(s) 533
BbvI GCAGC 2 cut(s) 164, 470
BccI CCATC 2 cut(s) 252, 639
BceAI ACGGC 2 cut(s) 289, 625
BclI TGATCA 1 cut(s) 487
BcnI CCSGG 1 cut(s) 232
BfaI CTAG 2 cut(s) 39, 255
BfoI RGCGCY 1 cut(s) 98
BfuAI ACCTGC 2 cut(s) 254, 390
BisI GCNGC 3 cut(s) 153, 407, 459
BlsI GCNGC 3 cut(s) 154, 408, 460
Bme1390I CCNGG 1 cut(s) 232
Bme18I GGWCC 3 cut(s) 58, 234, 580
BmgT120I GGNCC 6 cut(s) 35, 58, 234, 309, 404, 580
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 1 cut(s) 232
BmrI ACTGGG 1 cut(s) 220
BmuI ACTGGG 1 cut(s) 220
BoxI GACNNNNGTC 1 cut(s) 680
Bpu10I CCTNAGC 1 cut(s) 606
BpuMI CCSGG 1 cut(s) 232
BsaBI GATNNNNATC 1 cut(s) 486
BsaJI CCNNGG 3 cut(s) 90, 351, 400
BsaWI WCCGGW 1 cut(s) 60
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 231, 563
Bse1I ACTGG 1 cut(s) 226
Bse3DI GCAATG 2 cut(s) 59, 279
Bse8I GATNNNNATC 1 cut(s) 486
BseDI CCNNGG 3 cut(s) 90, 351, 400
BseGI GGATG 2 cut(s) 469, 631
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 3 cut(s) 139, 231, 563
BseMI GCAATG 2 cut(s) 59, 279
BseMII CTCAG 1 cut(s) 597
BseNI ACTGG 1 cut(s) 226
BseSI GKGCMC 1 cut(s) 533
BseXI GCAGC 2 cut(s) 164, 470
BsgI GTGCAG 1 cut(s) 477
BshFI GGCC 6 cut(s) 36, 89, 311, 350, 406, 556
BsiHKAI GWGCWC 1 cut(s) 533
BsiSI CCGG 2 cut(s) 61, 232
BslFI GGGAC 3 cut(s) 71, 214, 720
BslI CCNNNNNNNGG 3 cut(s) 139, 231, 563
BsmFI GGGAC 3 cut(s) 71, 214, 720
BsnI GGCC 6 cut(s) 36, 89, 311, 350, 406, 556
Bsp1286I GDGCHC 1 cut(s) 533
Bsp143I GATC 2 cut(s) 220, 487
BspACI CCGC 3 cut(s) 407, 440, 461
BspANI GGCC 6 cut(s) 36, 89, 311, 350, 406, 556
BspCNI CTCAG 1 cut(s) 598
BspLI GGNNCC 1 cut(s) 59
BspMI ACCTGC 2 cut(s) 254, 390
BspPI GGATC 1 cut(s) 215
BsrDI GCAATG 2 cut(s) 59, 279
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 3 cut(s) 90, 351, 400
BssMI GATC 2 cut(s) 220, 487
BssT1I CCWWGG 3 cut(s) 90, 351, 400
Bst4CI ACNGT 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 2 cut(s) 186, 606
BstF5I GGATG 2 cut(s) 469, 631
BstH2I RGCGCY 1 cut(s) 98
BstHHI GCGC 2 cut(s) 97, 119
BstKTI GATC 2 cut(s) 223, 490
BstMBI GATC 2 cut(s) 220, 487
BstMWI GCNNNNNNNGC 2 cut(s) 382, 467
BstNSI RCATGY 2 cut(s) 25, 331
BstPAI GACNNNNGTC 1 cut(s) 680
BstSCI CCNGG 1 cut(s) 230
BstSLI GKGCMC 1 cut(s) 533
BstV1I GCAGC 2 cut(s) 164, 470
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 6 cut(s) 36, 89, 311, 350, 406, 556
BtsCI GGATG 2 cut(s) 469, 631
BtsI GCAGTG 2 cut(s) 131, 599
BtsIMutI CAGTG 2 cut(s) 131, 599
BveI ACCTGC 2 cut(s) 254, 390
Cac8I GCNNGC 1 cut(s) 313
CfoI GCGC 2 cut(s) 97, 119
Cfr13I GGNCC 6 cut(s) 35, 58, 234, 309, 404, 580
Csp6I GTAC 1 cut(s) 267
CviAII CATG 4 cut(s) 22, 110, 328, 386
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 2 cut(s) 186, 606
DpnI GATC 2 cut(s) 222, 489
DpnII GATC 2 cut(s) 220, 487
Eco130I CCWWGG 3 cut(s) 90, 351, 400
Eco32I GATATC 1 cut(s) 145
Eco47I GGWCC 3 cut(s) 58, 234, 580
Eco57I CTGAAG 1 cut(s) 569
EcoO109I RGGNCCY 1 cut(s) 580
EcoRV GATATC 1 cut(s) 145
EcoT14I CCWWGG 3 cut(s) 90, 351, 400
EcoT22I ATGCAT 1 cut(s) 27
ErhI CCWWGG 3 cut(s) 90, 351, 400
FaeI CATG 4 cut(s) 25, 113, 331, 389
FalI AAGNNNNNCTT 4 cut(s) 361, 393, 393, 425
FaqI GGGAC 3 cut(s) 71, 214, 720
FatI CATG 4 cut(s) 21, 109, 327, 385
FauI CCCGC 1 cut(s) 433
FauNDI CATATG 1 cut(s) 679
FbaI TGATCA 1 cut(s) 487
Fnu4HI GCNGC 3 cut(s) 153, 407, 459
FokI GGATG 2 cut(s) 476, 618
Fsp4HI GCNGC 3 cut(s) 153, 407, 459
FspBI CTAG 2 cut(s) 39, 255
GlaI GCGC 2 cut(s) 96, 118
GluI GCNGC 3 cut(s) 153, 407, 459
HaeII RGCGCY 1 cut(s) 98
HaeIII GGCC 6 cut(s) 36, 89, 311, 350, 406, 556
HapII CCGG 2 cut(s) 61, 232
HhaI GCGC 2 cut(s) 97, 119
Hin1II CATG 4 cut(s) 25, 113, 331, 389
Hin6I GCGC 2 cut(s) 95, 117
HinP1I GCGC 2 cut(s) 95, 117
HindIII AAGCTT 3 cut(s) 188, 212, 394
HinfI GANTC 1 cut(s) 320
HpaII CCGG 2 cut(s) 61, 232
HphI GGTGA 4 cut(s) 206, 401, 586, 620
Hpy166II GTNNAC 2 cut(s) 531, 685
Hpy188I TCNGA 1 cut(s) 325
Hpy188III TCNNGA 2 cut(s) 614, 716
Hpy8I GTNNAC 2 cut(s) 531, 685
HpyAV CCTTC 7 cut(s) 107, 143, 296, 363, 546, 571, 593
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 5 cut(s) 25, 52, 385, 458, 531
HpyF10VI GCNNNNNNNGC 2 cut(s) 382, 467
HpyF3I CTNAG 2 cut(s) 186, 606
HpySE526I ACGT 1 cut(s) 47
Hsp92II CATG 4 cut(s) 25, 113, 331, 389
HspAI GCGC 2 cut(s) 95, 117
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 2 cut(s) 220, 487
Lsp1109I GCAGC 2 cut(s) 164, 470
MaeI CTAG 2 cut(s) 39, 255
MaeII ACGT 1 cut(s) 47
MalI GATC 2 cut(s) 222, 489
MboI GATC 2 cut(s) 220, 487
MboII GAAGA 1 cut(s) 629
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 1 cut(s) 533
MluCI AATT 1 cut(s) 357
MmeI TCCRAC 1 cut(s) 147
Mph1103I ATGCAT 1 cut(s) 27
MseI TTAA 2 cut(s) 512, 654
MspA1I CMGCKG 1 cut(s) 461
MspI CCGG 2 cut(s) 61, 232
MspR9I CCNGG 1 cut(s) 232
MwoI GCNNNNNNNGC 2 cut(s) 382, 467
NciI CCSGG 1 cut(s) 232
NdeI CATATG 1 cut(s) 679
NdeII GATC 2 cut(s) 220, 487
NlaIII CATG 4 cut(s) 25, 113, 331, 389
NlaIV GGNNCC 1 cut(s) 59
NsiI ATGCAT 1 cut(s) 27
NspI RCATGY 2 cut(s) 25, 331
PciI ACATGT 1 cut(s) 327
PfeI GAWTC 1 cut(s) 320
PkrI GCNGC 3 cut(s) 154, 408, 460
PpuMI RGGWCCY 1 cut(s) 580
PscI ACATGT 1 cut(s) 327
PshAI GACNNNNGTC 1 cut(s) 680
Psp1406I AACGTT 1 cut(s) 47
Psp5II RGGWCCY 1 cut(s) 580
PspN4I GGNNCC 1 cut(s) 59
PspPI GGNCC 6 cut(s) 35, 58, 234, 309, 404, 580
PspPPI RGGWCCY 1 cut(s) 580
PsuI RGATCY 1 cut(s) 220
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SaqAI TTAA 2 cut(s) 512, 654
SatI GCNGC 3 cut(s) 153, 407, 459
Sau3AI GATC 2 cut(s) 220, 487
Sau96I GGNCC 6 cut(s) 35, 58, 234, 309, 404, 580
ScrFI CCNGG 1 cut(s) 232
SduI GDGCHC 1 cut(s) 533
SinI GGWCC 3 cut(s) 58, 234, 580
Sse9I AATT 1 cut(s) 357
SsiI CCGC 3 cut(s) 407, 440, 461
SspI AATATT 1 cut(s) 693
SspMI CTAG 2 cut(s) 39, 255
StyD4I CCNGG 1 cut(s) 230
StyI CCWWGG 3 cut(s) 90, 351, 400
TaaI ACNGT 1 cut(s) 11
TaiI ACGT 1 cut(s) 50
TaqI TCGA 1 cut(s) 18
TasI AATT 1 cut(s) 357
TauI GCSGC 1 cut(s) 409
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 2 cut(s) 512, 654
Tru9I TTAA 2 cut(s) 512, 654
TscAI CASTG 2 cut(s) 131, 606
TseI GCWGC 2 cut(s) 152, 458
TspDTI ATGAA 3 cut(s) 89, 126, 510
TspRI CASTG 2 cut(s) 131, 606
VneI GTGCAC 1 cut(s) 529
VpaK11BI GGWCC 3 cut(s) 58, 234, 580
XceI RCATGY 2 cut(s) 25, 331
XspI CTAG 2 cut(s) 39, 255
Zsp2I ATGCAT 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.