MD15G1053200.v1.1

L-type lectin-domain containing receptor kinase IX.1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
3648016 .. 3651766
3751 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1053200.v1.1.491

Sequence Viewer

Length: 1962 bp
ATGTTACAAGCAAACCTTCCAAAGAAGTTCTGGTCTCAAGCTATACAAACCGCTGCATACATCATAAATCGACTTCCTAGCAGAATCTTGAAGTTTAAATCTCCTTGTCAAATTCTCAAGGGGAGAGATATTAACATAAGTCATCTCCGTGTGTTTGGATGTGTGTGCTATGTGCATATTCAAACTATTCACCGAGATAAACTTGATCCAAGGGCTATCAAGTGTGCATTCGTAGGCTACTCAACTTCCCAAAAGGGATACAAATGCTATGATTCTAAAACCAGAAAGGTGTTTGTATCCAGGGATGTACGGTTTGATGAGACACACTTCTTCTTTCAGAAGCATGATGATGAACCTCAGGGGGAGCTCTCATATGAAGTGTTTCCCACTCCTCTCGTCCTTGATGATCCAAGACTGTCAACGCCGCACAATGAAGCAATTGAGATAGAGCCAGCTCATGAAAATATGGAAGCAAATAATGAAGAAGTCCTCCACGAAAGGAGAGAGCCCCTTGAACAACCTACTCATCCACGAAGGAATCCTTCTCGAAACAGACAACCTCCAGCCAGGCTTGATGATTTTGAAATCTACATGCCTAGATATCCTATTGGACAAATGGTTTTACATAGCAAGACCTCCCCATCTCATGCAGCATTTGTCACTAAGTTATCTCAACACTCGGAGCCTCGATCCTTCGAAGAGGCAAACCAATCTCCTGTTTTCTATACCACCAAATCATCAAGAAATGGCCGCATGGCGGTTGGGATGGGTATTGGTGGGTCTCTAATTATCTTGGTTTGTGTATTACAGTTGGTTTGGTCCAAGATCTTGTGGAAGAAGAGAGAAAGAGAAGAAATTAGTAGTGATTGTGAATATCCTTCCGGTCTTGACTTGATCATGGACGATGATTTTGAAAAGGGGTTCATAACCTCTGGCCCAAGGAAGTTTTCATATAGTGAATTGGCTCACGCAACGAGTGAGTTTTCCAAGGAAGAAAAGCTAGGAGAGGGAGGGTTCGGTGGTGTTTACAAAGGCTTCATACAAGACTTGAACTCATTTGCTGCTGTTAAGAGGATATCGAGAGCGTCAAAACAAGGATTGAAGGAGTACGCGGCAGAAGTGAGGATCATTGGTCGACTTAGGCATCGGATTTTGGTTCAACTCATCGGTTGGTGCCATGAAAAAAAACTGCTACTCGTGTACGAGTTCATGTCCAATGGAAGCTTAGATTCTCATTTGTTCAAGGAAACAAGCTTCTTGACTTGGGAGGTAAGATACAAAATTGCTCAAGGCGTGGCAGCCGGGTTGCAATATCTTCATCAAGAATGGGAGCAATGTGTGCTGCATAGGGACATTAAATCCAGCAACGTTATGTTGGATTCGAATTTCAACGCGAAACTTGGAGATTTTGGGTTAGCACGACTTGTAGACCATGGAAAGGAACCACAAACAACGGCTTTAGCTGGAACGATGGGATACATGGCTCCTGAATACATTATCTCCGGAAAGGCTAGCAAGGAGTCGGATGTCTATAGCTTCGGAATTGTTGCCTTGGAGATTGCGTGCGGGCGGAAACCCATTGATCATACTCGAGTTAACATGGTGGAGTGGGTTTGGGATCTCTATGGAGAAGATAAAGTTTTTGAAGCAGCTGATCCAAAACTTGGTGGAGTTTTCGATAAGAAACAAGTCGAGTGCTTGATGATTGTAGGGTTATGGTGTGCTCATCCAGATTACAGTATGAGGCCTTCAATGCAACAAGTGATGCAAATGTTCACCTTCGAGGTTCCGTTGCCCATTCTCCCGTCAAAGATGCCGGTGGCCACCTATTTTCCTCTTCCAAGATCACTTTCAATGTTGTTCTCTGATAATAATGTTACTGGCTCTGAAGAAGGAGGACAAACTGAAGCGTCATGCCATGCATTTTACAACACTACTACTTCTTCCTCATACATACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

654

Amino Acids

74.32

Weight (kDa)

7.08

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_retrovirus PF25597 54 - 116 1.3e-27 Retroviral polymerase SH3-like domain
Pkinase PF00069 328 - 591 3.1e-49 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 330 - 590 1.1e-44 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10530 AT5G65600
fragaria_vesca FvH4_1g17770 FvH4_1g19171 FvH4_1g19180 FvH4_1g19922 FvH4_1g19923 FvH4_1g19940 FvH4_1g19950 FvH4_3g19030 FvH4_3g19040 FvH4_3g19350 FvH4_3g19361 FvH4_3g19370 FvH4_3g19372 FvH4_3g19390 FvH4_3g19390 FvH4_3g19400 FvH4_3g19400 FvH4_3g23100 FvH4_3g32500 FvH4_3g39140 FvH4_4g12891 FvH4_4g12900 FvH4_5g13890 FvH4_6g23490 FvH4_7g14930 FvH4_7g14950 FvH4_7g15082 FvH4_7g16980
malus_domestica MD01G1043400.v1.1 MD01G1043500.v1.1 MD03G1232800.v1.1 MD03G1232900.v1.1 MD03G1233000.v1.1 MD03G1233100.v1.1 MD03G1233200.v1.1 MD03G1233300.v1.1 MD03G1233600.v1.1 MD03G1233700.v1.1 MD03G1233900.v1.1 MD03G1234100.v1.1 MD03G1234300.v1.1 MD03G1234400.v1.1 MD03G1234500.v1.1 MD03G1234600.v1.1 MD08G1053200.v1.1 MD08G1053400.v1.1 MD08G1053500.v1.1 MD08G1053600.v1.1 MD08G1053800.v1.1 MD08G1053900.v1.1 MD08G1054000.v1.1 MD08G1054100.v1.1 MD08G1054200.v1.1 MD08G1054400.v1.1 MD08G1054600.v1.1 MD09G1175200.v1.1 MD09G1289800.v1.1 MD09G1289900.v1.1 MD11G1253600.v1.1 MD11G1254300.v1.1 MD11G1254500.v1.1 MD11G1254900.v1.1 MD11G1255100.v1.1 MD15G1042500.v1.1 MD15G1053100.v1.1 MD15G1053200.v1.1 MD15G1307500.v1.1
prunus_persica Prupe.1G157800_v2.0.a1 Prupe.1G395700_v2.0.a1 Prupe.4G174600_v2.0.a1 Prupe.4G174800_v2.0.a1 Prupe.4G174900_v2.0.a1 Prupe.4G175000_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175300_v2.0.a1 Prupe.4G175400_v2.0.a1 Prupe.4G175500_v2.0.a1 Prupe.4G175600_v2.0.a1 Prupe.4G175700_v2.0.a1 Prupe.4G241200_v2.0.a1 Prupe.6G208500_v2.0.a1 Prupe.6G208700_v2.0.a1 Prupe.6G208800_v2.0.a1 Prupe.8G117500_v2.0.a1 Prupe.I004200_v2.0.a1 Prupe.I004300_v2.0.a1
pyrus_communis pycom03g18010 pycom03g18050 pycom03g18070 pycom03g18100 pycom08g04440 pycom09g19760 pycom11g22500 pycom11g22510 pycom11g22520
rosa_chinensis RchiOBHm_Chr1g0318811 RchiOBHm_Chr1g0329471 RchiOBHm_Chr1g0340841 RchiOBHm_Chr1g0340931 RchiOBHm_Chr1g0356861 RchiOBHm_Chr1g0357251 RchiOBHm_Chr1g0357261 RchiOBHm_Chr1g0357321 RchiOBHm_Chr1g0360231 RchiOBHm_Chr1g0365521 RchiOBHm_Chr1g0365571 RchiOBHm_Chr1g0365581 RchiOBHm_Chr2g0108101 RchiOBHm_Chr2g0108131 RchiOBHm_Chr2g0108161 RchiOBHm_Chr2g0108191 RchiOBHm_Chr2g0108201 RchiOBHm_Chr2g0110211 RchiOBHm_Chr2g0110221 RchiOBHm_Chr2g0110261 RchiOBHm_Chr2g0110301 RchiOBHm_Chr2g0111801 RchiOBHm_Chr2g0111821 RchiOBHm_Chr2g0128081 RchiOBHm_Chr2g0151141 RchiOBHm_Chr3g0469441 RchiOBHm_Chr3g0481491 RchiOBHm_Chr4g0399611 RchiOBHm_Chr4g0414891 RchiOBHm_Chr5g0031941 RchiOBHm_Chr5g0032011 RchiOBHm_Chr5g0032051 RchiOBHm_Chr5g0032101 RchiOBHm_Chr5g0032421 RchiOBHm_Chr5g0032461 RchiOBHm_Chr5g0032481 RchiOBHm_Chr5g0032541 RchiOBHm_Chr5g0032571 RchiOBHm_Chr5g0032591 RchiOBHm_Chr5g0032631 RchiOBHm_Chr5g0037251 RchiOBHm_Chr5g0037271 RchiOBHm_Chr5g0037281 RchiOBHm_Chr5g0037291 RchiOBHm_Chr5g0040701 RchiOBHm_Chr5g0040731 RchiOBHm_Chr5g0059491 RchiOBHm_Chr6g0257841 RchiOBHm_Chr6g0274701 RchiOBHm_Chr7g0212711
rosa_laevigata RLG00000002585 RLG00000002586 RLG00000008111 RLG00000009258 RLG00000012123 RLG00000014148 RLG00000014734 RLG00000017640 RLG00000017642 RLG00000017645 RLG00000017646 RLG00000017795 RLG00000017796 RLG00000017925 RLG00000017926 RLG00000020068 RLG00000023393 RLG00000024495 RLG00000028027 RLG00000028033 RLG00000028034 RLG00000028035 RLG00000028037 RLG00000028040 RLG00000028041 RLG00000028072 RLG00000028159 RLG00000028160 RLG00000033360 RLG00000033399 RLG00000033401 RLG00000033402 RLG00000033403 RLG00000033404 RLG00000033405 RLG00000033407 RLG00000033408 RLG00000033411 RLG00000033414 RLG00000033470 RLG00000033769 RLG00000033772 RLG00000033997
rosa_multiflora Rmu_co8044118.1_g000001 Rmu_co8077552.1_g000001 Rmu_co8082100.1_g000001 Rmu_co8171646.1_g000001 Rmu_co8225604.1_g000001 Rmu_co8285705.1_g000001 Rmu_co8296369.1_g000001 Rmu_co8319685.1_g000001 Rmu_co8326977.1_g000001 Rmu_co8421957.1_g000001 Rmu_co8457997.1_g000001 Rmu_co8464379.1_g000001 Rmu_co8466539.1_g000001 Rmu_sc0000055.1_g000016 Rmu_sc0000064.1_g000032 Rmu_sc0000316.1_g000004 Rmu_sc0000316.1_g000010 Rmu_sc0000316.1_g000011 Rmu_sc0000394.1_g000016 Rmu_sc0001017.1_g000022 Rmu_sc0001484.1_g000003 Rmu_sc0002530.1_g000028 Rmu_sc0002530.1_g000031 Rmu_sc0002530.1_g000035 Rmu_sc0002587.1_g000043 Rmu_sc0002719.1_g000003 Rmu_sc0002719.1_g000005 Rmu_sc0002964.1_g000011 Rmu_sc0003031.1_g000001 Rmu_sc0003031.1_g000014 Rmu_sc0003031.1_g000027 Rmu_sc0003031.1_g000053 Rmu_sc0003552.1_g000003 Rmu_sc0003656.1_g000001 Rmu_sc0003916.1_g000001 Rmu_sc0003916.1_g000003 Rmu_sc0004100.1_g000001 Rmu_sc0004129.1_g000008 Rmu_sc0004365.1_g000001 Rmu_sc0004365.1_g000002 Rmu_sc0004542.1_g000017 Rmu_sc0004792.1_g000029 Rmu_sc0004792.1_g000032 Rmu_sc0004792.1_g000034 Rmu_sc0004792.1_g000035 Rmu_sc0004927.1_g000003 Rmu_sc0004927.1_g000005 Rmu_sc0004927.1_g000013 Rmu_sc0004927.1_g000023 Rmu_sc0005002.1_g000009 Rmu_sc0005002.1_g000028 Rmu_sc0005278.1_g000024 Rmu_sc0005278.1_g000025 Rmu_sc0005375.1_g000022 Rmu_sc0005728.1_g000005 Rmu_sc0005728.1_g000007 Rmu_sc0005770.1_g000017 Rmu_sc0005808.1_g000002 Rmu_sc0005808.1_g000004 Rmu_sc0006798.1_g000002 Rmu_sc0006798.1_g000003 Rmu_sc0006798.1_g000006 Rmu_sc0006798.1_g000007 Rmu_sc0006798.1_g000011 Rmu_sc0007406.1_g000014 Rmu_sc0007406.1_g000025 Rmu_sc0007965.1_g000011 Rmu_sc0009840.1_g000001 Rmu_sc0011812.1_g000005 Rmu_sc0015491.1_g000002 Rmu_sc0019008.1_g000001 Rmu_sc0019103.1_g000001 Rmu_sc0020236.1_g000002 Rmu_sc0021706.1_g000002 Rmu_sc0022958.1_g000008 Rmu_sc0026238.1_g000001 Rmu_sc0032550.1_g000001 Rmu_sc0034983.1_g000001 Rmu_sc0039890.1_g000002 Rmu_sc0041272.1_g000001 Rmu_sc0041373.1_g000001 Rmu_ssc0000100.1_g000012 Rmu_ssc0000100.1_g000017 Rmu_ssc0000100.1_g000031 Rmu_ssc0000100.1_g000033 Rmu_ssc0000386.1_g000042
rosa_roxburghii Rroxscaffold_1G00039940 Rroxscaffold_1G00039970 Rroxscaffold_1G00039980 Rroxscaffold_1G00043650 Rroxscaffold_1G00043700 Rroxscaffold_1G00047420 Rroxscaffold_1G00047430 Rroxscaffold_1G00047450 Rroxscaffold_1G00047470 Rroxscaffold_1G00047480 Rroxscaffold_1G00047500 Rroxscaffold_1G00047510 Rroxscaffold_1G00047520 Rroxscaffold_1G00047540 Rroxscaffold_1G00047570 Rroxscaffold_1G00047690 Rroxscaffold_1G00047720 Rroxscaffold_1G00047730 Rroxscaffold_1G00047740 Rroxscaffold_1G00047880 Rroxscaffold_1G00047900 Rroxscaffold_1G00047910 Rroxscaffold_1G00047920 Rroxscaffold_1G00047940 Rroxscaffold_1G00047950 Rroxscaffold_1G00047970 Rroxscaffold_1G00047980 Rroxscaffold_1G00048000 Rroxscaffold_2G00132060 Rroxscaffold_2G00132100 Rroxscaffold_2G00132110 Rroxscaffold_2G00133580 Rroxscaffold_2G00133630 Rroxscaffold_2G00133640 Rroxscaffold_2G00135480 Rroxscaffold_2G00135490 Rroxscaffold_2G00135530 Rroxscaffold_2G00135600 Rroxscaffold_2G00135630 Rroxscaffold_4G00291170 Rroxscaffold_4G00296260 Rroxscaffold_4G00296270 Rroxscaffold_4G00298840 Rroxscaffold_4G00298890 Rroxscaffold_4G00298900 Rroxscaffold_4G00298930 Rroxscaffold_4G00298960 Rroxscaffold_4G00299220 Rroxscaffold_5G00344530 Rroxscaffold_5G00353770 Rroxscaffold_5G00358640 Rroxscaffold_7G00202240 Rroxscaffold_7G00209000
rosa_rugosa Rorug01G0218600 Rorug01G0251800 Rorug01G0255100 Rorug01G0255200 Rorug01G0255500 Rorug01G0255700 Rorug01G0256400 Rorug01G0276200 Rorug01G0322400 Rorug02G0150200 Rorug02G0150300 Rorug02G0150400 Rorug02G0150700 Rorug02G0150800 Rorug02G0150900 Rorug02G0151000 Rorug02G0151100 Rorug02G0166000 Rorug02G0166100.1 Rorug02G0176300 Rorug02G0176400 Rorug02G0176700 Rorug03G0192200 Rorug03G0193100 Rorug04G0017700 Rorug04G0331400 Rorug05G0129400 Rorug05G0131900 Rorug05G0132200 Rorug05G0132300 Rorug05G0132300 Rorug05G0132400 Rorug05G0132500 Rorug05G0132600 Rorug05G0132700 Rorug05G0132800 Rorug05G0132900 Rorug05G0164000 Rorug05G0164000 Rorug05G0186700 Rorug05G0187000 Rorug05G0323000 Rorug05G0323000 Rorug05G0567400 Rorug07G0136000 Rorug07G0159500
rosa_samantha Rh1CG249900 Rh1CG253000 Rh1DG261400 Rh1DG264400 Rh1DG264800 Rh1DG264900 Rh1DG265600 Rh2AG218700 Rh2AG228900 Rh2AG229000 Rh2BG227800 Rh2BG241900 Rh2BG297700 Rh2DG224600 Rh2DG225000 Rh2DG236900 Rh3AG243400 Rh3CG273500 Rh4DG088000 Rh5CG246800 Rh5CG247800 Rh5CG252000 Rh5CG252100 Rh5CG252200 Rh5CG252500 Rh5CG252600 Rh5CG252800 Rh5CG253100 Rh5CG253200 Rh5CG253300 Rh5CG253900 Rh5CG254100 Rh5CG288700 Rh5CG288800 Rh5CG309700 Rh5CG309800 Rh5DG415100 Rh6BG078900 Rh6BG142900 Rh6CG073600 Rh6CG139500 Rh7CG210700
rosa_wichuraiana Rw0G015410 Rw1G023790 Rw1G023810 Rw1G023830 Rw1G023890 Rw1G023960 Rw1G024030 Rw1G024060 Rw1G024080 Rw1G024100 Rw2G015830 Rw2G015870 Rw2G015890 Rw2G016830 Rw2G016870 Rw2G016890 Rw2G017700 Rw2G017710 Rw2G017730 Rw3G021740 Rw3G026100 Rw4G007870 Rw5G020370 Rw5G020560 Rw5G020590 Rw5G020610 Rw5G020620 Rw5G020640 Rw5G020660 Rw5G023440 Rw5G023480 Rw5G025580 Rw5G025610 Rw5G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1173
AccB7I CCANNNNNTGG 1 cut(s) 1664
AccI GTMKAC 2 cut(s) 1135, 1428
AccII CGCG 2 cut(s) 1112, 1394
AccIII TCCGGA 1 cut(s) 1502
AciI CCGC 7 cut(s) 51, 425, 751, 758, 1112, 1566, 1570
AclI AACGTT 1 cut(s) 1368
AclWI GGATC 6 cut(s) 200, 401, 684, 1133, 1626, 1649
AcoI YGGCCR 2 cut(s) 748, 1821
AcsI RAATTY 2 cut(s) 111, 1384
AcuI CTGAAG 2 cut(s) 1908, 1926
AfaI GTAC 3 cut(s) 309, 1109, 1202
AfiI CCNNNNNNNGG 3 cut(s) 757, 1438, 1664
AjnI CCWGG 2 cut(s) 299, 566
AjuI GAANNNNNNNTTGG 4 cut(s) 931, 963, 1834, 1866
AluBI AGCT 9 cut(s) 41, 367, 455, 1000, 1224, 1254, 1463, 1536, 1652
AluI AGCT 9 cut(s) 41, 367, 455, 1000, 1224, 1254, 1463, 1536, 1652
Alw21I GWGCWC 2 cut(s) 369, 1726
Alw26I GTCTC 3 cut(s) 39, 314, 786
AlwI GGATC 6 cut(s) 200, 401, 684, 1133, 1626, 1649
Ama87I CYCGRG 1 cut(s) 1590
Aor13HI TCCGGA 1 cut(s) 1502
AoxI GGCC 4 cut(s) 748, 934, 1745, 1821
ApeKI GCWGC 6 cut(s) 53, 650, 1061, 1298, 1342, 1649
ApoI RAATTY 2 cut(s) 111, 1384
ArsI GACNNNNNNTTYG 2 cut(s) 893, 925
Asp700I GAANNNNTTC 1 cut(s) 381
AspS9I GGNCC 2 cut(s) 819, 935
AsuC2I CCSGG 1 cut(s) 1303
AsuHPI GGTGA 2 cut(s) 182, 1768
AsuII TTCGAA 2 cut(s) 696, 1382
AsuNHI GCTAGC 1 cut(s) 1511
AvaI CYCGRG 1 cut(s) 1590
AvaII GGWCC 1 cut(s) 819
AxyI CCTNAGG 1 cut(s) 357
BalI TGGCCA 1 cut(s) 1823
BanI GGYRCC 1 cut(s) 1173
BanII GRGCYC 2 cut(s) 369, 510
BarI GAAGNNNNNNTAC 2 cut(s) 1732, 1764
BauI CACGAG 1 cut(s) 1196
Bbv12I GWGCWC 2 cut(s) 369, 1726
BbvI GCAGC 6 cut(s) 40, 662, 1048, 1310, 1329, 1661
BccI CCATC 3 cut(s) 649, 760, 1465
BceAI ACGGC 1 cut(s) 1470
BciT130I CCWGG 2 cut(s) 301, 568
BciVI GTATCC 3 cut(s) 251, 307, 1469
BclI TGATCA 2 cut(s) 894, 1582
BcnI CCSGG 1 cut(s) 1303
BcoDI GTCTC 3 cut(s) 39, 314, 786
BfaI CTAG 4 cut(s) 78, 597, 1001, 1512
BfmI CTRYAG 1 cut(s) 1531
BfuI GTATCC 3 cut(s) 251, 307, 1469
BglII AGATCT 1 cut(s) 825
BisI GCNGC 9 cut(s) 54, 425, 651, 751, 1062, 1113, 1299, 1343, 1650
BlsI GCNGC 9 cut(s) 55, 426, 652, 752, 1063, 1114, 1300, 1344, 1651
Bme1390I CCNGG 3 cut(s) 301, 568, 1303
Bme18I GGWCC 1 cut(s) 819
BmeT110I CYCGRG 1 cut(s) 1590
BmgT120I GGNCC 2 cut(s) 819, 935
BmiI GGNNCC 5 cut(s) 684, 1175, 1443, 1485, 1788
BmrFI CCNGG 3 cut(s) 301, 568, 1303
BmsI GCATC 3 cut(s) 1153, 1755, 1803
BmtI GCTAGC 1 cut(s) 1515
BpmI CTGGAG 1 cut(s) 546
Bpu14I TTCGAA 2 cut(s) 696, 1382
BpuEI CTTGAG 3 cut(s) 21, 101, 1272
BpuMI CCSGG 1 cut(s) 1303
BsaI GGTCTC 2 cut(s) 39, 786
BsaJI CCNNGG 6 cut(s) 209, 300, 938, 987, 1432, 1551
BsaWI WCCGGW 2 cut(s) 881, 1502
BsaXI ACNNNNNCTCC 4 cut(s) 1484, 1514, 1547, 1577
Bsc4I CCNNNNNNNGG 3 cut(s) 757, 1438, 1664
Bse118I RCCGGY 1 cut(s) 1816
Bse1I ACTGG 1 cut(s) 1885
Bse21I CCTNAGG 1 cut(s) 357
Bse3DI GCAATG 1 cut(s) 1340
BseAI TCCGGA 1 cut(s) 1502
BseBI CCWGG 2 cut(s) 301, 568
BseDI CCNNGG 6 cut(s) 209, 300, 938, 987, 1432, 1551
BseGI GGATG 6 cut(s) 164, 310, 526, 771, 1531, 1726
BseLI CCNNNNNNNGG 3 cut(s) 757, 1438, 1664
BseMI GCAATG 1 cut(s) 1340
BseMII CTCAG 1 cut(s) 371
BseNI ACTGG 1 cut(s) 1885
BseRI GAGGAG 1 cut(s) 381
BseXI GCAGC 6 cut(s) 40, 662, 1048, 1310, 1329, 1661
Bsh1236I CGCG 2 cut(s) 1112, 1394
BshFI GGCC 4 cut(s) 750, 936, 1747, 1823
BshNI GGYRCC 1 cut(s) 1173
BsiHKAI GWGCWC 2 cut(s) 369, 1726
BsiHKCI CYCGRG 1 cut(s) 1590
BsiSI CCGG 4 cut(s) 882, 1302, 1503, 1817
BslFI GGGAC 1 cut(s) 1364
BslI CCNNNNNNNGG 3 cut(s) 757, 1438, 1664
BsmAI GTCTC 3 cut(s) 39, 314, 786
BsmFI GGGAC 1 cut(s) 1364
BsmI GAATGC 1 cut(s) 227
BsnI GGCC 4 cut(s) 750, 936, 1747, 1823
Bso31I GGTCTC 2 cut(s) 39, 786
BsoBI CYCGRG 1 cut(s) 1590
Bsp119I TTCGAA 2 cut(s) 696, 1382
Bsp1286I GDGCHC 3 cut(s) 369, 510, 1726
Bsp13I TCCGGA 1 cut(s) 1502
Bsp19I CCATGG 1 cut(s) 1432
BspACI CCGC 7 cut(s) 51, 425, 751, 758, 1112, 1566, 1570
BspANI GGCC 4 cut(s) 750, 936, 1747, 1823
BspCNI CTCAG 1 cut(s) 370
BspEI TCCGGA 1 cut(s) 1502
BspFNI CGCG 2 cut(s) 1112, 1394
BspHI TCATGA 1 cut(s) 457
BspLI GGNNCC 5 cut(s) 684, 1175, 1443, 1485, 1788
BspOI GCTAGC 1 cut(s) 1515
BspPI GGATC 6 cut(s) 200, 401, 684, 1133, 1626, 1649
BspT104I TTCGAA 2 cut(s) 696, 1382
BspT107I GGYRCC 1 cut(s) 1173
BspTNI GGTCTC 2 cut(s) 39, 786
BsrDI GCAATG 1 cut(s) 1340
BsrFI RCCGGY 1 cut(s) 1816
BsrI ACTGG 1 cut(s) 1885
BssAI RCCGGY 1 cut(s) 1816
BssECI CCNNGG 6 cut(s) 209, 300, 938, 987, 1432, 1551
BssSI CACGAG 1 cut(s) 1196
BssT1I CCWWGG 5 cut(s) 209, 938, 987, 1432, 1551
Bst2BI CACGAG 1 cut(s) 1196
Bst2UI CCWGG 2 cut(s) 301, 568
Bst4CI ACNGT 5 cut(s) 312, 417, 810, 1739, 1959
Bst6I CTCTTC 3 cut(s) 693, 833, 1842
BstAPI GCANNNNNTGC 1 cut(s) 1339
BstBI TTCGAA 2 cut(s) 696, 1382
BstC8I GCNNGC 4 cut(s) 453, 1513, 1564, 1568
BstDEI CTNAG 4 cut(s) 357, 663, 1139, 1225
BstDSI CCRYGG 1 cut(s) 1432
BstF5I GGATG 6 cut(s) 164, 310, 526, 771, 1531, 1726
BstFNI CGCG 2 cut(s) 1112, 1394
BstMAI GTCTC 3 cut(s) 39, 314, 786
BstMWI GCNNNNNNNGC 2 cut(s) 1339, 1753
BstNI CCWGG 2 cut(s) 301, 568
BstNSI RCATGY 1 cut(s) 595
BstSCI CCNGG 3 cut(s) 299, 566, 1301
BstSFI CTRYAG 1 cut(s) 1531
BstUI CGCG 2 cut(s) 1112, 1394
BstV1I GCAGC 6 cut(s) 40, 662, 1048, 1310, 1329, 1661
BstX2I RGATCY 2 cut(s) 825, 1618
BstYI RGATCY 2 cut(s) 825, 1618
Bsu36I CCTNAGG 1 cut(s) 357
BsuI GTATCC 3 cut(s) 251, 307, 1469
BsuRI GGCC 4 cut(s) 750, 936, 1747, 1823
BtgI CCRYGG 1 cut(s) 1432
BtsCI GGATG 6 cut(s) 164, 310, 526, 771, 1531, 1726
Cac8I GCNNGC 4 cut(s) 453, 1513, 1564, 1568
CciI TCATGA 1 cut(s) 457
Cfr10I RCCGGY 1 cut(s) 1816
Cfr13I GGNCC 2 cut(s) 819, 935
CseI GACGC 2 cut(s) 1074, 1899
Csp6I GTAC 3 cut(s) 308, 1108, 1201
CviQI GTAC 3 cut(s) 308, 1108, 1201
DdeI CTNAG 4 cut(s) 357, 663, 1139, 1225
DraI TTTAAA 1 cut(s) 97
EaeI YGGCCR 2 cut(s) 748, 1821
Eam1104I CTCTTC 3 cut(s) 693, 833, 1842
EarI CTCTTC 3 cut(s) 693, 833, 1842
EciI GGCGGA 1 cut(s) 1585
Ecl136II GAGCTC 1 cut(s) 367
Eco130I CCWWGG 5 cut(s) 209, 938, 987, 1432, 1551
Eco147I AGGCCT 1 cut(s) 1747
Eco24I GRGCYC 2 cut(s) 369, 510
Eco31I GGTCTC 2 cut(s) 39, 786
Eco32I GATATC 2 cut(s) 602, 1077
Eco47I GGWCC 1 cut(s) 819
Eco53kI GAGCTC 1 cut(s) 367
Eco57I CTGAAG 2 cut(s) 1908, 1926
Eco81I CCTNAGG 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 1590
EcoICRI GAGCTC 1 cut(s) 367
EcoRII CCWGG 2 cut(s) 299, 566
EcoRV GATATC 2 cut(s) 602, 1077
EcoT14I CCWWGG 5 cut(s) 209, 938, 987, 1432, 1551
EcoT22I ATGCAT 1 cut(s) 1924
EcoT38I GRGCYC 2 cut(s) 369, 510
ErhI CCWWGG 5 cut(s) 209, 938, 987, 1432, 1551
FalI AAGNNNNNCTT 3 cut(s) 32, 526, 558
FaqI GGGAC 1 cut(s) 1364
FauI CCCGC 1 cut(s) 1559
FauNDI CATATG 1 cut(s) 373
FbaI TGATCA 2 cut(s) 894, 1582
FblI GTMKAC 2 cut(s) 1135, 1428
Fnu4HI GCNGC 9 cut(s) 54, 425, 651, 751, 1062, 1113, 1299, 1343, 1650
FokI GGATG 6 cut(s) 171, 317, 513, 778, 1538, 1713
FriOI GRGCYC 2 cut(s) 369, 510
Fsp4HI GCNGC 9 cut(s) 54, 425, 651, 751, 1062, 1113, 1299, 1343, 1650
FspBI CTAG 4 cut(s) 78, 597, 1001, 1512
GluI GCNGC 9 cut(s) 54, 425, 651, 751, 1062, 1113, 1299, 1343, 1650
GsuI CTGGAG 1 cut(s) 546
HaeIII GGCC 4 cut(s) 750, 936, 1747, 1823
HapII CCGG 4 cut(s) 882, 1302, 1503, 1817
HgaI GACGC 2 cut(s) 1074, 1899
HincII GTYRAC 3 cut(s) 420, 1136, 1597
HindII GTYRAC 3 cut(s) 420, 1136, 1597
HindIII AAGCTT 2 cut(s) 1222, 1252
HinfI GANTC 6 cut(s) 84, 272, 538, 1229, 1379, 1520
HpaI GTTAAC 1 cut(s) 1597
HpaII CCGG 4 cut(s) 882, 1302, 1503, 1817
HphI GGTGA 2 cut(s) 182, 1768
Hpy166II GTNNAC 7 cut(s) 420, 1027, 1136, 1201, 1429, 1597, 1776
Hpy188I TCNGA 7 cut(s) 339, 682, 1149, 1525, 1541, 1867, 1888
Hpy8I GTNNAC 7 cut(s) 420, 1027, 1136, 1201, 1429, 1597, 1776
HpyAV CCTTC 9 cut(s) 26, 528, 552, 703, 888, 1096, 1758, 1789, 1886
HpyCH4III ACNGT 5 cut(s) 312, 417, 810, 1739, 1959
HpyCH4IV ACGT 1 cut(s) 1368
HpyCH4V TGCA 9 cut(s) 56, 175, 227, 650, 1309, 1345, 1756, 1768, 1922
HpyF10VI GCNNNNNNNGC 2 cut(s) 1339, 1753
HpyF3I CTNAG 4 cut(s) 357, 663, 1139, 1225
HpySE526I ACGT 1 cut(s) 1368
Kpn2I TCCGGA 1 cut(s) 1502
Ksp22I TGATCA 2 cut(s) 894, 1582
KspAI GTTAAC 1 cut(s) 1597
LmnI GCTCC 4 cut(s) 364, 682, 1330, 1489
Lsp1109I GCAGC 6 cut(s) 40, 662, 1048, 1310, 1329, 1661
LweI GCATC 3 cut(s) 1153, 1755, 1803
MaeI CTAG 4 cut(s) 78, 597, 1001, 1512
MaeII ACGT 1 cut(s) 1368
MaeIII GTNAC 3 cut(s) 3, 658, 1876
MfeI CAATTG 1 cut(s) 438
MflI RGATCY 2 cut(s) 825, 1618
MhlI GDGCHC 3 cut(s) 369, 510, 1726
MlsI TGGCCA 1 cut(s) 1823
MluCI AATT 8 cut(s) 111, 438, 786, 855, 959, 1281, 1384, 1542
MluNI TGGCCA 1 cut(s) 1823
MlyI GAGTC 1 cut(s) 1529
MmeI TCCRAC 2 cut(s) 1356, 1503
Mox20I TGGCCA 1 cut(s) 1823
Mph1103I ATGCAT 1 cut(s) 1924
MroI TCCGGA 1 cut(s) 1502
MroXI GAANNNNTTC 1 cut(s) 381
MscI TGGCCA 1 cut(s) 1823
MseI TTAA 5 cut(s) 96, 132, 1068, 1356, 1596
MslI CAYNNNNRTG 2 cut(s) 147, 348
Msp20I TGGCCA 1 cut(s) 1823
MspA1I CMGCKG 2 cut(s) 53, 1652
MspI CCGG 4 cut(s) 882, 1302, 1503, 1817
MspR9I CCNGG 3 cut(s) 301, 568, 1303
MunI CAATTG 1 cut(s) 438
Mva1269I GAATGC 1 cut(s) 227
MvaI CCWGG 2 cut(s) 301, 568
MvnI CGCG 2 cut(s) 1112, 1394
MwoI GCNNNNNNNGC 2 cut(s) 1339, 1753
NciI CCSGG 1 cut(s) 1303
NcoI CCATGG 1 cut(s) 1432
NdeI CATATG 1 cut(s) 373
NheI GCTAGC 1 cut(s) 1511
NlaIV GGNNCC 5 cut(s) 684, 1175, 1443, 1485, 1788
NmuCI GTSAC 1 cut(s) 658
NsiI ATGCAT 1 cut(s) 1924
NspI RCATGY 1 cut(s) 595
NspV TTCGAA 2 cut(s) 696, 1382
PaeR7I CTCGAG 1 cut(s) 1590
PagI TCATGA 1 cut(s) 457
PceI AGGCCT 1 cut(s) 1747
PctI GAATGC 1 cut(s) 227
PdmI GAANNNNTTC 1 cut(s) 381
PfeI GAWTC 5 cut(s) 84, 272, 538, 1229, 1379
PflMI CCANNNNNTGG 1 cut(s) 1664
PkrI GCNGC 9 cut(s) 55, 426, 652, 752, 1063, 1114, 1300, 1344, 1651
PleI GAGTC 1 cut(s) 1528
PpsI GAGTC 1 cut(s) 1528
Psp124BI GAGCTC 1 cut(s) 369
Psp1406I AACGTT 1 cut(s) 1368
Psp6I CCWGG 2 cut(s) 299, 566
PspGI CCWGG 2 cut(s) 299, 566
PspN4I GGNNCC 5 cut(s) 684, 1175, 1443, 1485, 1788
PspPI GGNCC 2 cut(s) 819, 935
PspXI VCTCGAGB 1 cut(s) 1590
PsuI RGATCY 2 cut(s) 825, 1618
PvuII CAGCTG 1 cut(s) 1652
RsaI GTAC 3 cut(s) 309, 1109, 1202
RsaNI GTAC 3 cut(s) 308, 1108, 1201
RseI CAYNNNNRTG 2 cut(s) 147, 348
SacI GAGCTC 1 cut(s) 369
SalI GTCGAC 1 cut(s) 1134
SaqAI TTAA 5 cut(s) 96, 132, 1068, 1356, 1596
SatI GCNGC 9 cut(s) 54, 425, 651, 751, 1062, 1113, 1299, 1343, 1650
Sau96I GGNCC 2 cut(s) 819, 935
SchI GAGTC 1 cut(s) 1529
ScrFI CCNGG 3 cut(s) 301, 568, 1303
SduI GDGCHC 3 cut(s) 369, 510, 1726
SfaNI GCATC 3 cut(s) 1153, 1755, 1803
SfcI CTRYAG 1 cut(s) 1531
Sfr274I CTCGAG 1 cut(s) 1590
SfuI TTCGAA 2 cut(s) 696, 1382
SinI GGWCC 1 cut(s) 819
SlaI CTCGAG 1 cut(s) 1590
SmiMI CAYNNNNRTG 2 cut(s) 147, 348
SmlI CTYRAG 4 cut(s) 36, 116, 1287, 1590
SmoI CTYRAG 4 cut(s) 36, 116, 1287, 1590
Sse9I AATT 8 cut(s) 111, 438, 786, 855, 959, 1281, 1384, 1542
SseBI AGGCCT 1 cut(s) 1747
SsiI CCGC 7 cut(s) 51, 425, 751, 758, 1112, 1566, 1570
SspMI CTAG 4 cut(s) 78, 597, 1001, 1512
SstI GAGCTC 1 cut(s) 369
StuI AGGCCT 1 cut(s) 1747
StyD4I CCNGG 3 cut(s) 299, 566, 1301
StyI CCWWGG 5 cut(s) 209, 938, 987, 1432, 1551
TaaI ACNGT 5 cut(s) 312, 417, 810, 1739, 1959
TaiI ACGT 1 cut(s) 1371
TasI AATT 8 cut(s) 111, 438, 786, 855, 959, 1281, 1384, 1542
TauI GCSGC 3 cut(s) 427, 753, 1115
TfiI GAWTC 5 cut(s) 84, 272, 538, 1229, 1379
Tru1I TTAA 5 cut(s) 96, 132, 1068, 1356, 1596
Tru9I TTAA 5 cut(s) 96, 132, 1068, 1356, 1596
TseFI GTSAC 1 cut(s) 658
TseI GCWGC 6 cut(s) 53, 650, 1061, 1298, 1342, 1649
Tsp45I GTSAC 1 cut(s) 658
TspGWI ACGGA 2 cut(s) 137, 1779
Van91I CCANNNNNTGG 1 cut(s) 1664
VpaK11BI GGWCC 1 cut(s) 819
XapI RAATTY 2 cut(s) 111, 1384
XceI RCATGY 1 cut(s) 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XhoI CTCGAG 1 cut(s) 1590
XmiI GTMKAC 2 cut(s) 1135, 1428
XmnI GAANNNNTTC 1 cut(s) 381
XspI CTAG 4 cut(s) 78, 597, 1001, 1512
Zsp2I ATGCAT 1 cut(s) 1924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.