Rmu_co8296369.1_g000001

L-type lectin-domain containing receptor kinase IX.1-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8296369.1
Physical Location & Seq
Reverse (-)
398 .. 865
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8296369.1_g000001.1.cds

Sequence Viewer

Length: 468 bp
atggctttggagtatgttacaacaggaaaggctagcaagcaatcagatgtctacagctttggagttgttgctctagaaatagcatgtgggagaaaacccatcgatctgaatttggaaaacagtcaagttgaaatggtggagtgggtttggggactttatggtgaagggaaaatcattgaagcagctgatccaaagctctgtggagattttgatgagaaacaaatggagtgtttgatgatggttggattgtggtgtgctcatccggattacaatatgaggccttcaatgcaacaagcaattcaagtccttagctataaagttgcatggcctgttctcccattagagatgccgatggccacttttccacaaaatactcgccaaatgttgtctactaataatactggttcggaaggaagcaaaactgagtccagctattatggtggttatagcagctattcctcacaatag

Protein Analysis

155

Amino Acids

17.31

Weight (kDa)

4.64

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10530 AT5G65600
fragaria_vesca FvH4_1g17770 FvH4_1g19171 FvH4_1g19180 FvH4_1g19922 FvH4_1g19923 FvH4_1g19940 FvH4_1g19950 FvH4_3g19030 FvH4_3g19040 FvH4_3g19350 FvH4_3g19361 FvH4_3g19370 FvH4_3g19372 FvH4_3g19390 FvH4_3g19390 FvH4_3g19400 FvH4_3g19400 FvH4_3g23100 FvH4_3g32500 FvH4_3g39140 FvH4_4g12891 FvH4_4g12900 FvH4_5g13890 FvH4_6g23490 FvH4_7g14930 FvH4_7g14950 FvH4_7g15082 FvH4_7g16980
malus_domestica MD01G1043400.v1.1 MD01G1043500.v1.1 MD03G1232800.v1.1 MD03G1232900.v1.1 MD03G1233000.v1.1 MD03G1233100.v1.1 MD03G1233200.v1.1 MD03G1233300.v1.1 MD03G1233600.v1.1 MD03G1233700.v1.1 MD03G1233900.v1.1 MD03G1234100.v1.1 MD03G1234300.v1.1 MD03G1234400.v1.1 MD03G1234500.v1.1 MD03G1234600.v1.1 MD08G1053200.v1.1 MD08G1053400.v1.1 MD08G1053500.v1.1 MD08G1053600.v1.1 MD08G1053800.v1.1 MD08G1053900.v1.1 MD08G1054000.v1.1 MD08G1054100.v1.1 MD08G1054200.v1.1 MD08G1054400.v1.1 MD08G1054600.v1.1 MD09G1175200.v1.1 MD09G1289800.v1.1 MD09G1289900.v1.1 MD11G1253600.v1.1 MD11G1254300.v1.1 MD11G1254500.v1.1 MD11G1254900.v1.1 MD11G1255100.v1.1 MD15G1042500.v1.1 MD15G1053100.v1.1 MD15G1053200.v1.1 MD15G1307500.v1.1
prunus_persica Prupe.1G157800_v2.0.a1 Prupe.1G395700_v2.0.a1 Prupe.4G174600_v2.0.a1 Prupe.4G174800_v2.0.a1 Prupe.4G174900_v2.0.a1 Prupe.4G175000_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175300_v2.0.a1 Prupe.4G175400_v2.0.a1 Prupe.4G175500_v2.0.a1 Prupe.4G175600_v2.0.a1 Prupe.4G175700_v2.0.a1 Prupe.4G241200_v2.0.a1 Prupe.6G208500_v2.0.a1 Prupe.6G208700_v2.0.a1 Prupe.6G208800_v2.0.a1 Prupe.8G117500_v2.0.a1 Prupe.I004200_v2.0.a1 Prupe.I004300_v2.0.a1
pyrus_communis pycom03g18010 pycom03g18050 pycom03g18070 pycom03g18100 pycom08g04440 pycom09g19760 pycom11g22500 pycom11g22510 pycom11g22520
rosa_chinensis RchiOBHm_Chr1g0318811 RchiOBHm_Chr1g0329471 RchiOBHm_Chr1g0340841 RchiOBHm_Chr1g0340931 RchiOBHm_Chr1g0356861 RchiOBHm_Chr1g0357251 RchiOBHm_Chr1g0357261 RchiOBHm_Chr1g0357321 RchiOBHm_Chr1g0360231 RchiOBHm_Chr1g0365521 RchiOBHm_Chr1g0365571 RchiOBHm_Chr1g0365581 RchiOBHm_Chr2g0108101 RchiOBHm_Chr2g0108131 RchiOBHm_Chr2g0108161 RchiOBHm_Chr2g0108191 RchiOBHm_Chr2g0108201 RchiOBHm_Chr2g0110211 RchiOBHm_Chr2g0110221 RchiOBHm_Chr2g0110261 RchiOBHm_Chr2g0110301 RchiOBHm_Chr2g0111801 RchiOBHm_Chr2g0111821 RchiOBHm_Chr2g0128081 RchiOBHm_Chr2g0151141 RchiOBHm_Chr3g0469441 RchiOBHm_Chr3g0481491 RchiOBHm_Chr4g0399611 RchiOBHm_Chr4g0414891 RchiOBHm_Chr5g0031941 RchiOBHm_Chr5g0032011 RchiOBHm_Chr5g0032051 RchiOBHm_Chr5g0032101 RchiOBHm_Chr5g0032421 RchiOBHm_Chr5g0032461 RchiOBHm_Chr5g0032481 RchiOBHm_Chr5g0032541 RchiOBHm_Chr5g0032571 RchiOBHm_Chr5g0032591 RchiOBHm_Chr5g0032631 RchiOBHm_Chr5g0037251 RchiOBHm_Chr5g0037271 RchiOBHm_Chr5g0037281 RchiOBHm_Chr5g0037291 RchiOBHm_Chr5g0040701 RchiOBHm_Chr5g0040731 RchiOBHm_Chr5g0059491 RchiOBHm_Chr6g0257841 RchiOBHm_Chr6g0274701 RchiOBHm_Chr7g0212711
rosa_laevigata RLG00000002585 RLG00000002586 RLG00000008111 RLG00000009258 RLG00000012123 RLG00000014148 RLG00000014734 RLG00000017640 RLG00000017642 RLG00000017645 RLG00000017646 RLG00000017795 RLG00000017796 RLG00000017925 RLG00000017926 RLG00000020068 RLG00000023393 RLG00000024495 RLG00000028027 RLG00000028033 RLG00000028034 RLG00000028035 RLG00000028037 RLG00000028040 RLG00000028041 RLG00000028072 RLG00000028159 RLG00000028160 RLG00000033360 RLG00000033399 RLG00000033401 RLG00000033402 RLG00000033403 RLG00000033404 RLG00000033405 RLG00000033407 RLG00000033408 RLG00000033411 RLG00000033414 RLG00000033470 RLG00000033769 RLG00000033772 RLG00000033997
rosa_multiflora Rmu_co8044118.1_g000001 Rmu_co8077552.1_g000001 Rmu_co8082100.1_g000001 Rmu_co8171646.1_g000001 Rmu_co8225604.1_g000001 Rmu_co8285705.1_g000001 Rmu_co8296369.1_g000001 Rmu_co8319685.1_g000001 Rmu_co8326977.1_g000001 Rmu_co8421957.1_g000001 Rmu_co8457997.1_g000001 Rmu_co8464379.1_g000001 Rmu_co8466539.1_g000001 Rmu_sc0000055.1_g000016 Rmu_sc0000064.1_g000032 Rmu_sc0000316.1_g000004 Rmu_sc0000316.1_g000010 Rmu_sc0000316.1_g000011 Rmu_sc0000394.1_g000016 Rmu_sc0001017.1_g000022 Rmu_sc0001484.1_g000003 Rmu_sc0002530.1_g000028 Rmu_sc0002530.1_g000031 Rmu_sc0002530.1_g000035 Rmu_sc0002587.1_g000043 Rmu_sc0002719.1_g000003 Rmu_sc0002719.1_g000005 Rmu_sc0002964.1_g000011 Rmu_sc0003031.1_g000001 Rmu_sc0003031.1_g000014 Rmu_sc0003031.1_g000027 Rmu_sc0003031.1_g000053 Rmu_sc0003552.1_g000003 Rmu_sc0003656.1_g000001 Rmu_sc0003916.1_g000001 Rmu_sc0003916.1_g000003 Rmu_sc0004100.1_g000001 Rmu_sc0004129.1_g000008 Rmu_sc0004365.1_g000001 Rmu_sc0004365.1_g000002 Rmu_sc0004542.1_g000017 Rmu_sc0004792.1_g000029 Rmu_sc0004792.1_g000032 Rmu_sc0004792.1_g000034 Rmu_sc0004792.1_g000035 Rmu_sc0004927.1_g000003 Rmu_sc0004927.1_g000005 Rmu_sc0004927.1_g000013 Rmu_sc0004927.1_g000023 Rmu_sc0005002.1_g000009 Rmu_sc0005002.1_g000028 Rmu_sc0005278.1_g000024 Rmu_sc0005278.1_g000025 Rmu_sc0005375.1_g000022 Rmu_sc0005728.1_g000005 Rmu_sc0005728.1_g000007 Rmu_sc0005770.1_g000017 Rmu_sc0005808.1_g000002 Rmu_sc0005808.1_g000004 Rmu_sc0006798.1_g000002 Rmu_sc0006798.1_g000003 Rmu_sc0006798.1_g000006 Rmu_sc0006798.1_g000007 Rmu_sc0006798.1_g000011 Rmu_sc0007406.1_g000014 Rmu_sc0007406.1_g000025 Rmu_sc0007965.1_g000011 Rmu_sc0009840.1_g000001 Rmu_sc0011812.1_g000005 Rmu_sc0015491.1_g000002 Rmu_sc0019008.1_g000001 Rmu_sc0019103.1_g000001 Rmu_sc0020236.1_g000002 Rmu_sc0021706.1_g000002 Rmu_sc0022958.1_g000008 Rmu_sc0026238.1_g000001 Rmu_sc0032550.1_g000001 Rmu_sc0034983.1_g000001 Rmu_sc0039890.1_g000002 Rmu_sc0041272.1_g000001 Rmu_sc0041373.1_g000001 Rmu_ssc0000100.1_g000012 Rmu_ssc0000100.1_g000017 Rmu_ssc0000100.1_g000031 Rmu_ssc0000100.1_g000033 Rmu_ssc0000386.1_g000042
rosa_roxburghii Rroxscaffold_1G00039940 Rroxscaffold_1G00039970 Rroxscaffold_1G00039980 Rroxscaffold_1G00043650 Rroxscaffold_1G00043700 Rroxscaffold_1G00047420 Rroxscaffold_1G00047430 Rroxscaffold_1G00047450 Rroxscaffold_1G00047470 Rroxscaffold_1G00047480 Rroxscaffold_1G00047500 Rroxscaffold_1G00047510 Rroxscaffold_1G00047520 Rroxscaffold_1G00047540 Rroxscaffold_1G00047570 Rroxscaffold_1G00047690 Rroxscaffold_1G00047720 Rroxscaffold_1G00047730 Rroxscaffold_1G00047740 Rroxscaffold_1G00047880 Rroxscaffold_1G00047900 Rroxscaffold_1G00047910 Rroxscaffold_1G00047920 Rroxscaffold_1G00047940 Rroxscaffold_1G00047950 Rroxscaffold_1G00047970 Rroxscaffold_1G00047980 Rroxscaffold_1G00048000 Rroxscaffold_2G00132060 Rroxscaffold_2G00132100 Rroxscaffold_2G00132110 Rroxscaffold_2G00133580 Rroxscaffold_2G00133630 Rroxscaffold_2G00133640 Rroxscaffold_2G00135480 Rroxscaffold_2G00135490 Rroxscaffold_2G00135530 Rroxscaffold_2G00135600 Rroxscaffold_2G00135630 Rroxscaffold_4G00291170 Rroxscaffold_4G00296260 Rroxscaffold_4G00296270 Rroxscaffold_4G00298840 Rroxscaffold_4G00298890 Rroxscaffold_4G00298900 Rroxscaffold_4G00298930 Rroxscaffold_4G00298960 Rroxscaffold_4G00299220 Rroxscaffold_5G00344530 Rroxscaffold_5G00353770 Rroxscaffold_5G00358640 Rroxscaffold_7G00202240 Rroxscaffold_7G00209000
rosa_rugosa Rorug01G0218600 Rorug01G0251800 Rorug01G0255100 Rorug01G0255200 Rorug01G0255500 Rorug01G0255700 Rorug01G0256400 Rorug01G0276200 Rorug01G0322400 Rorug02G0150200 Rorug02G0150300 Rorug02G0150400 Rorug02G0150700 Rorug02G0150800 Rorug02G0150900 Rorug02G0151000 Rorug02G0151100 Rorug02G0166000 Rorug02G0166100.1 Rorug02G0176300 Rorug02G0176400 Rorug02G0176700 Rorug03G0192200 Rorug03G0193100 Rorug04G0017700 Rorug04G0331400 Rorug05G0129400 Rorug05G0131900 Rorug05G0132200 Rorug05G0132300 Rorug05G0132300 Rorug05G0132400 Rorug05G0132500 Rorug05G0132600 Rorug05G0132700 Rorug05G0132800 Rorug05G0132900 Rorug05G0164000 Rorug05G0164000 Rorug05G0186700 Rorug05G0187000 Rorug05G0323000 Rorug05G0323000 Rorug05G0567400 Rorug07G0136000 Rorug07G0159500
rosa_samantha Rh1CG249900 Rh1CG253000 Rh1DG261400 Rh1DG264400 Rh1DG264800 Rh1DG264900 Rh1DG265600 Rh2AG218700 Rh2AG228900 Rh2AG229000 Rh2BG227800 Rh2BG241900 Rh2BG297700 Rh2DG224600 Rh2DG225000 Rh2DG236900 Rh3AG243400 Rh3CG273500 Rh4DG088000 Rh5CG246800 Rh5CG247800 Rh5CG252000 Rh5CG252100 Rh5CG252200 Rh5CG252500 Rh5CG252600 Rh5CG252800 Rh5CG253100 Rh5CG253200 Rh5CG253300 Rh5CG253900 Rh5CG254100 Rh5CG288700 Rh5CG288800 Rh5CG309700 Rh5CG309800 Rh5DG415100 Rh6BG078900 Rh6BG142900 Rh6CG073600 Rh6CG139500 Rh7CG210700
rosa_wichuraiana Rw0G015410 Rw1G023790 Rw1G023810 Rw1G023830 Rw1G023890 Rw1G023960 Rw1G024030 Rw1G024060 Rw1G024080 Rw1G024100 Rw2G015830 Rw2G015870 Rw2G015890 Rw2G016830 Rw2G016870 Rw2G016890 Rw2G017700 Rw2G017710 Rw2G017730 Rw3G021740 Rw3G026100 Rw4G007870 Rw5G020370 Rw5G020560 Rw5G020590 Rw5G020610 Rw5G020620 Rw5G020640 Rw5G020660 Rw5G023440 Rw5G023480 Rw5G025580 Rw5G025610 Rw5G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 51, 389
AccIII TCCGGA 1 cut(s) 262
AclWI GGATC 1 cut(s) 182
AcoI YGGCCR 1 cut(s) 354
AcsI RAATTY 1 cut(s) 109
AgsI TTSAA 4 cut(s) 131, 179, 285, 302
AluBI AGCT 6 cut(s) 57, 185, 196, 312, 432, 453
AluI AGCT 6 cut(s) 57, 185, 196, 312, 432, 453
Alw21I GWGCWC 1 cut(s) 259
AlwI GGATC 1 cut(s) 182
Aor13HI TCCGGA 1 cut(s) 262
AoxI GGCC 3 cut(s) 278, 326, 354
ApeKI GCWGC 2 cut(s) 182, 450
ApoI RAATTY 1 cut(s) 109
AsuHPI GGTGA 1 cut(s) 173
AsuNHI GCTAGC 1 cut(s) 32
BalI TGGCCA 1 cut(s) 356
Bbv12I GWGCWC 1 cut(s) 259
BbvI GCAGC 2 cut(s) 194, 462
BccI CCATC 3 cut(s) 107, 232, 346
BfaI CTAG 2 cut(s) 33, 74
BfmI CTRYAG 1 cut(s) 52
BisI GCNGC 2 cut(s) 183, 451
BlsI GCNGC 2 cut(s) 184, 452
BmsI GCATC 1 cut(s) 336
BmtI GCTAGC 1 cut(s) 36
Bpu10I CCTNAGC 1 cut(s) 308
Bsa29I ATCGAT 1 cut(s) 102
BsaWI WCCGGW 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 406
BseAI TCCGGA 1 cut(s) 262
BseCI ATCGAT 1 cut(s) 102
BseGI GGATG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 414
BseNI ACTGG 1 cut(s) 406
BseXI GCAGC 2 cut(s) 194, 462
BshFI GGCC 3 cut(s) 280, 328, 356
BshVI ATCGAT 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 259
BsiSI CCGG 1 cut(s) 263
BslFI GGGAC 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 165
BsnI GGCC 3 cut(s) 280, 328, 356
Bsp1286I GDGCHC 1 cut(s) 259
Bsp13I TCCGGA 1 cut(s) 262
Bsp143I GATC 2 cut(s) 103, 187
BspANI GGCC 3 cut(s) 280, 328, 356
BspCNI CTCAG 1 cut(s) 415
BspDI ATCGAT 1 cut(s) 102
BspEI TCCGGA 1 cut(s) 262
BspOI GCTAGC 1 cut(s) 36
BspPI GGATC 1 cut(s) 182
BsrI ACTGG 1 cut(s) 406
BssMI GATC 2 cut(s) 103, 187
Bst4CI ACNGT 1 cut(s) 122
BstC8I GCNNGC 2 cut(s) 34, 38
BstDEI CTNAG 2 cut(s) 308, 423
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 2 cut(s) 106, 190
BstMBI GATC 2 cut(s) 103, 187
BstMWI GCNNNNNNNGC 1 cut(s) 286
BstNSI RCATGY 1 cut(s) 87
BstSFI CTRYAG 1 cut(s) 52
BstV1I GCAGC 2 cut(s) 194, 462
Bsu15I ATCGAT 1 cut(s) 102
BsuRI GGCC 3 cut(s) 280, 328, 356
BsuTUI ATCGAT 1 cut(s) 102
BtsCI GGATG 1 cut(s) 259
Cac8I GCNNGC 2 cut(s) 34, 38
ClaI ATCGAT 1 cut(s) 102
CviAII CATG 2 cut(s) 84, 324
DdeI CTNAG 2 cut(s) 308, 423
DpnI GATC 2 cut(s) 105, 189
DpnII GATC 2 cut(s) 103, 187
EaeI YGGCCR 1 cut(s) 354
Eco147I AGGCCT 1 cut(s) 280
FaeI CATG 2 cut(s) 87, 327
FaiI YATR 8 cut(s) 15, 85, 159, 275, 315, 325, 438, 447
FaqI GGGAC 1 cut(s) 165
FatI CATG 2 cut(s) 83, 323
FblI GTMKAC 2 cut(s) 51, 389
Fnu4HI GCNGC 2 cut(s) 183, 451
FokI GGATG 1 cut(s) 246
Fsp4HI GCNGC 2 cut(s) 183, 451
FspBI CTAG 2 cut(s) 33, 74
GluI GCNGC 2 cut(s) 183, 451
HaeIII GGCC 3 cut(s) 280, 328, 356
HapII CCGG 1 cut(s) 263
Hin1II CATG 2 cut(s) 87, 327
HinfI GANTC 1 cut(s) 425
HpaII CCGG 1 cut(s) 263
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 2 cut(s) 52, 390
Hpy188I TCNGA 3 cut(s) 46, 108, 409
Hpy188III TCNNGA 2 cut(s) 74, 263
Hpy8I GTNNAC 2 cut(s) 52, 390
HpyAV CCTTC 3 cut(s) 158, 291, 404
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 2 cut(s) 289, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 286
HpyF3I CTNAG 2 cut(s) 308, 423
Hsp92II CATG 2 cut(s) 87, 327
Kpn2I TCCGGA 1 cut(s) 262
Kzo9I GATC 2 cut(s) 103, 187
LpnPI CCDG 5 cut(s) 9, 276, 342, 387, 442
Lsp1109I GCAGC 2 cut(s) 194, 462
LweI GCATC 1 cut(s) 336
MaeI CTAG 2 cut(s) 33, 74
MaeIII GTNAC 1 cut(s) 16
MalI GATC 2 cut(s) 105, 189
MboI GATC 2 cut(s) 103, 187
MhlI GDGCHC 1 cut(s) 259
MlsI TGGCCA 1 cut(s) 356
MluCI AATT 2 cut(s) 109, 297
MluNI TGGCCA 1 cut(s) 356
MlyI GAGTC 1 cut(s) 434
MmeI TCCRAC 1 cut(s) 223
MnlI CCTC 1 cut(s) 270
Mox20I TGGCCA 1 cut(s) 356
MroI TCCGGA 1 cut(s) 262
MscI TGGCCA 1 cut(s) 356
Msp20I TGGCCA 1 cut(s) 356
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 286
NdeII GATC 2 cut(s) 103, 187
NheI GCTAGC 1 cut(s) 32
NlaIII CATG 2 cut(s) 87, 327
NspI RCATGY 1 cut(s) 87
PceI AGGCCT 1 cut(s) 280
PkrI GCNGC 2 cut(s) 184, 452
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
PvuII CAGCTG 1 cut(s) 185
SatI GCNGC 2 cut(s) 183, 451
Sau3AI GATC 2 cut(s) 103, 187
SchI GAGTC 1 cut(s) 434
SduI GDGCHC 1 cut(s) 259
SetI ASST 6 cut(s) 59, 187, 198, 314, 434, 455
SfaNI GCATC 1 cut(s) 336
SfcI CTRYAG 1 cut(s) 52
Sse9I AATT 2 cut(s) 109, 297
SseBI AGGCCT 1 cut(s) 280
SspMI CTAG 2 cut(s) 33, 74
StuI AGGCCT 1 cut(s) 280
TaaI ACNGT 1 cut(s) 122
TaqI TCGA 1 cut(s) 102
TasI AATT 2 cut(s) 109, 297
TseI GCWGC 2 cut(s) 182, 450
XapI RAATTY 1 cut(s) 109
XbaI TCTAGA 1 cut(s) 73
XceI RCATGY 1 cut(s) 87
XmiI GTMKAC 2 cut(s) 51, 389
XspI CTAG 2 cut(s) 33, 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.