MD08G1053800.v1.1

L-type lectin-domain containing receptor kinase IX.1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
4205610 .. 4207331
1722 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1053800.v1.1.491

Sequence Viewer

Length: 1722 bp
ATGTTTCAAAGCATTCTAGCAAGTTTCATCCTCATTGTCATTAGTTTTTTGGCTCCCCTTGCACATCCGCTGTCCTTCAAAATAACGCAATTCGACCAAACTACAAAGAACATATCTTATGAAGGTGATGCCTCGCGGGTACCCAGAGCAATTCAACTCAACTCACAAAGTTCATGGATGGTTGGGCGGGCTACGTACACAGAGCCTCTCCACCTGTGGGACTCTAGTACAGGATCACTGGCAGATTTTACTACTCATTTCACTTTCGTTGTCGACACTGGTAACAACAACGTCTTTAGCGACGGATTTGCCTTTTTCCTTGGTCCTGTTGGCTATCCAATCCCACCAAACTCCGCCGCCTCTTCACTTGGATTATTCAACAGCACCACCAAACTCCGCAGCAATAACCAAATTGTAGCTGTTGAGTTTGACACTTTCGCAAACGAAGCCTTTGATCCGCAAAAGTGGCATGTCGGGATAGACATAAACAGTATCTCCTCCGTAGATACTGCCAGTTGGACAAATGTTAGCAGCAACAGCGGGAAGCTGGGACATGCATGGATAACTTACAATGCCACTTCCAAAAACCTTAGTGTGTTTTGGACGTATGACGAAAACCCTGTTTTTGTGAACAACTCTTCTCTTTCTCACCAGATTGACTTACGAGAGGTTCTCCTCGAAAAGGTTACAATAGGATTTTCAGCTTCTACCGGAGTGTTCCCAGAACGACATCTCATATATTCATGGGAATTCAGTTCAAGCTTGGATTTTACTAGCAAACAAAAAAAGGTCGTACCCAGTGCACAAGGCTCCCGCTTTACGCAGAGTCAGAACGAAAAAAAAAGGGACAAGAGATTCTTGATAGTGGCGGTTGCAGTTTCTTTTTTCGTTTTGATGTTTTGTGTAGCCATATGCAGGTTGGTGATCAAGAAGAAGCGCGTATATAGGACCGACGCGCCCTCGGTGAATACGAATCTTGAGGGACTGGCATTTCCGAAACGATTTGCTTACAAAGAATTAGCTGCAGCCACCAACGGCTTTGCTAACAATGTGAGGCTAGGCCAAGGAGGTTCGGGACAAGTTTACAAAGGAATGTTAAAAGACCTTGGATGCGCAGTTGCGGTGAAGAGGATCTTCGCAGAATCAGAGCATCACGAGAAAATATTCGTCAATGAAGTCAAAATACTAAGCCGATTGATTCACAGGAACCTGGTGCAGTTCATTGGATGGTGTCATGAGCAAGGCGAGTGCTTACTTGTTTACGCATACATGCCTAATGGCAGCCTTGACATGCATCTATTCGGCCATGGAGCAGCACTGCAATGGGATTTTCGGTATAAGATTGCTTTAGGCTTGGCCTCGGCTCTTCATTATCTACACGAAGATGTGGAGCAGTGTGTCCTTCACAGGGATATCAAATCAGCTAATGTGTTGTTGGATGACGAATTCAGCACAAAGCTTGGTGATTTTGGGATTGCGAAGCTCATGGATCCGCGGTTCAGGACTCAAACAACAGGGGTGGTGGGGACTTTCGGGTACATGGCCCCCGAATATGAGAAGGGAGGGAGGGCAAGTAAAGAATCCGACATGTTTAGCTTTGGAGTTGTGGCCTTGGAACTTGCATGCGGTAGGAGGACTTTCCATGACGGAGAACTTGACGTGCCGCTTGTGAGTTGGGGTTTGGCAACTCTACCTTGCCGGAAATCTGCTCTACGCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

574

Amino Acids

63.77

Weight (kDa)

8.28

Isoelectric Point (pI)

32.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 24 - 261 1.4e-71 Legume lectin domain
Pkinase PF00069 349 - 549 1.6e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 352 - 545 1.2e-39 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10530 AT5G65600
fragaria_vesca FvH4_1g17770 FvH4_1g19171 FvH4_1g19180 FvH4_1g19922 FvH4_1g19923 FvH4_1g19940 FvH4_1g19950 FvH4_3g19030 FvH4_3g19040 FvH4_3g19350 FvH4_3g19361 FvH4_3g19370 FvH4_3g19372 FvH4_3g19390 FvH4_3g19390 FvH4_3g19400 FvH4_3g19400 FvH4_3g23100 FvH4_3g32500 FvH4_3g39140 FvH4_4g12891 FvH4_4g12900 FvH4_5g13890 FvH4_6g23490 FvH4_7g14930 FvH4_7g14950 FvH4_7g15082 FvH4_7g16980
malus_domestica MD01G1043400.v1.1 MD01G1043500.v1.1 MD03G1232800.v1.1 MD03G1232900.v1.1 MD03G1233000.v1.1 MD03G1233100.v1.1 MD03G1233200.v1.1 MD03G1233300.v1.1 MD03G1233600.v1.1 MD03G1233700.v1.1 MD03G1233900.v1.1 MD03G1234100.v1.1 MD03G1234300.v1.1 MD03G1234400.v1.1 MD03G1234500.v1.1 MD03G1234600.v1.1 MD08G1053200.v1.1 MD08G1053400.v1.1 MD08G1053500.v1.1 MD08G1053600.v1.1 MD08G1053800.v1.1 MD08G1053900.v1.1 MD08G1054000.v1.1 MD08G1054100.v1.1 MD08G1054200.v1.1 MD08G1054400.v1.1 MD08G1054600.v1.1 MD09G1175200.v1.1 MD09G1289800.v1.1 MD09G1289900.v1.1 MD11G1253600.v1.1 MD11G1254300.v1.1 MD11G1254500.v1.1 MD11G1254900.v1.1 MD11G1255100.v1.1 MD15G1042500.v1.1 MD15G1053100.v1.1 MD15G1053200.v1.1 MD15G1307500.v1.1
prunus_persica Prupe.1G157800_v2.0.a1 Prupe.1G395700_v2.0.a1 Prupe.4G174600_v2.0.a1 Prupe.4G174800_v2.0.a1 Prupe.4G174900_v2.0.a1 Prupe.4G175000_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175300_v2.0.a1 Prupe.4G175400_v2.0.a1 Prupe.4G175500_v2.0.a1 Prupe.4G175600_v2.0.a1 Prupe.4G175700_v2.0.a1 Prupe.4G241200_v2.0.a1 Prupe.6G208500_v2.0.a1 Prupe.6G208700_v2.0.a1 Prupe.6G208800_v2.0.a1 Prupe.8G117500_v2.0.a1 Prupe.I004200_v2.0.a1 Prupe.I004300_v2.0.a1
pyrus_communis pycom03g18010 pycom03g18050 pycom03g18070 pycom03g18100 pycom08g04440 pycom09g19760 pycom11g22500 pycom11g22510 pycom11g22520
rosa_chinensis RchiOBHm_Chr1g0318811 RchiOBHm_Chr1g0329471 RchiOBHm_Chr1g0340841 RchiOBHm_Chr1g0340931 RchiOBHm_Chr1g0356861 RchiOBHm_Chr1g0357251 RchiOBHm_Chr1g0357261 RchiOBHm_Chr1g0357321 RchiOBHm_Chr1g0360231 RchiOBHm_Chr1g0365521 RchiOBHm_Chr1g0365571 RchiOBHm_Chr1g0365581 RchiOBHm_Chr2g0108101 RchiOBHm_Chr2g0108131 RchiOBHm_Chr2g0108161 RchiOBHm_Chr2g0108191 RchiOBHm_Chr2g0108201 RchiOBHm_Chr2g0110211 RchiOBHm_Chr2g0110221 RchiOBHm_Chr2g0110261 RchiOBHm_Chr2g0110301 RchiOBHm_Chr2g0111801 RchiOBHm_Chr2g0111821 RchiOBHm_Chr2g0128081 RchiOBHm_Chr2g0151141 RchiOBHm_Chr3g0469441 RchiOBHm_Chr3g0481491 RchiOBHm_Chr4g0399611 RchiOBHm_Chr4g0414891 RchiOBHm_Chr5g0031941 RchiOBHm_Chr5g0032011 RchiOBHm_Chr5g0032051 RchiOBHm_Chr5g0032101 RchiOBHm_Chr5g0032421 RchiOBHm_Chr5g0032461 RchiOBHm_Chr5g0032481 RchiOBHm_Chr5g0032541 RchiOBHm_Chr5g0032571 RchiOBHm_Chr5g0032591 RchiOBHm_Chr5g0032631 RchiOBHm_Chr5g0037251 RchiOBHm_Chr5g0037271 RchiOBHm_Chr5g0037281 RchiOBHm_Chr5g0037291 RchiOBHm_Chr5g0040701 RchiOBHm_Chr5g0040731 RchiOBHm_Chr5g0059491 RchiOBHm_Chr6g0257841 RchiOBHm_Chr6g0274701 RchiOBHm_Chr7g0212711
rosa_laevigata RLG00000002585 RLG00000002586 RLG00000008111 RLG00000009258 RLG00000012123 RLG00000014148 RLG00000014734 RLG00000017640 RLG00000017642 RLG00000017645 RLG00000017646 RLG00000017795 RLG00000017796 RLG00000017925 RLG00000017926 RLG00000020068 RLG00000023393 RLG00000024495 RLG00000028027 RLG00000028033 RLG00000028034 RLG00000028035 RLG00000028037 RLG00000028040 RLG00000028041 RLG00000028072 RLG00000028159 RLG00000028160 RLG00000033360 RLG00000033399 RLG00000033401 RLG00000033402 RLG00000033403 RLG00000033404 RLG00000033405 RLG00000033407 RLG00000033408 RLG00000033411 RLG00000033414 RLG00000033470 RLG00000033769 RLG00000033772 RLG00000033997
rosa_multiflora Rmu_co8044118.1_g000001 Rmu_co8077552.1_g000001 Rmu_co8082100.1_g000001 Rmu_co8171646.1_g000001 Rmu_co8225604.1_g000001 Rmu_co8285705.1_g000001 Rmu_co8296369.1_g000001 Rmu_co8319685.1_g000001 Rmu_co8326977.1_g000001 Rmu_co8421957.1_g000001 Rmu_co8457997.1_g000001 Rmu_co8464379.1_g000001 Rmu_co8466539.1_g000001 Rmu_sc0000055.1_g000016 Rmu_sc0000064.1_g000032 Rmu_sc0000316.1_g000004 Rmu_sc0000316.1_g000010 Rmu_sc0000316.1_g000011 Rmu_sc0000394.1_g000016 Rmu_sc0001017.1_g000022 Rmu_sc0001484.1_g000003 Rmu_sc0002530.1_g000028 Rmu_sc0002530.1_g000031 Rmu_sc0002530.1_g000035 Rmu_sc0002587.1_g000043 Rmu_sc0002719.1_g000003 Rmu_sc0002719.1_g000005 Rmu_sc0002964.1_g000011 Rmu_sc0003031.1_g000001 Rmu_sc0003031.1_g000014 Rmu_sc0003031.1_g000027 Rmu_sc0003031.1_g000053 Rmu_sc0003552.1_g000003 Rmu_sc0003656.1_g000001 Rmu_sc0003916.1_g000001 Rmu_sc0003916.1_g000003 Rmu_sc0004100.1_g000001 Rmu_sc0004129.1_g000008 Rmu_sc0004365.1_g000001 Rmu_sc0004365.1_g000002 Rmu_sc0004542.1_g000017 Rmu_sc0004792.1_g000029 Rmu_sc0004792.1_g000032 Rmu_sc0004792.1_g000034 Rmu_sc0004792.1_g000035 Rmu_sc0004927.1_g000003 Rmu_sc0004927.1_g000005 Rmu_sc0004927.1_g000013 Rmu_sc0004927.1_g000023 Rmu_sc0005002.1_g000009 Rmu_sc0005002.1_g000028 Rmu_sc0005278.1_g000024 Rmu_sc0005278.1_g000025 Rmu_sc0005375.1_g000022 Rmu_sc0005728.1_g000005 Rmu_sc0005728.1_g000007 Rmu_sc0005770.1_g000017 Rmu_sc0005808.1_g000002 Rmu_sc0005808.1_g000004 Rmu_sc0006798.1_g000002 Rmu_sc0006798.1_g000003 Rmu_sc0006798.1_g000006 Rmu_sc0006798.1_g000007 Rmu_sc0006798.1_g000011 Rmu_sc0007406.1_g000014 Rmu_sc0007406.1_g000025 Rmu_sc0007965.1_g000011 Rmu_sc0009840.1_g000001 Rmu_sc0011812.1_g000005 Rmu_sc0015491.1_g000002 Rmu_sc0019008.1_g000001 Rmu_sc0019103.1_g000001 Rmu_sc0020236.1_g000002 Rmu_sc0021706.1_g000002 Rmu_sc0022958.1_g000008 Rmu_sc0026238.1_g000001 Rmu_sc0032550.1_g000001 Rmu_sc0034983.1_g000001 Rmu_sc0039890.1_g000002 Rmu_sc0041272.1_g000001 Rmu_sc0041373.1_g000001 Rmu_ssc0000100.1_g000012 Rmu_ssc0000100.1_g000017 Rmu_ssc0000100.1_g000031 Rmu_ssc0000100.1_g000033 Rmu_ssc0000386.1_g000042
rosa_roxburghii Rroxscaffold_1G00039940 Rroxscaffold_1G00039970 Rroxscaffold_1G00039980 Rroxscaffold_1G00043650 Rroxscaffold_1G00043700 Rroxscaffold_1G00047420 Rroxscaffold_1G00047430 Rroxscaffold_1G00047450 Rroxscaffold_1G00047470 Rroxscaffold_1G00047480 Rroxscaffold_1G00047500 Rroxscaffold_1G00047510 Rroxscaffold_1G00047520 Rroxscaffold_1G00047540 Rroxscaffold_1G00047570 Rroxscaffold_1G00047690 Rroxscaffold_1G00047720 Rroxscaffold_1G00047730 Rroxscaffold_1G00047740 Rroxscaffold_1G00047880 Rroxscaffold_1G00047900 Rroxscaffold_1G00047910 Rroxscaffold_1G00047920 Rroxscaffold_1G00047940 Rroxscaffold_1G00047950 Rroxscaffold_1G00047970 Rroxscaffold_1G00047980 Rroxscaffold_1G00048000 Rroxscaffold_2G00132060 Rroxscaffold_2G00132100 Rroxscaffold_2G00132110 Rroxscaffold_2G00133580 Rroxscaffold_2G00133630 Rroxscaffold_2G00133640 Rroxscaffold_2G00135480 Rroxscaffold_2G00135490 Rroxscaffold_2G00135530 Rroxscaffold_2G00135600 Rroxscaffold_2G00135630 Rroxscaffold_4G00291170 Rroxscaffold_4G00296260 Rroxscaffold_4G00296270 Rroxscaffold_4G00298840 Rroxscaffold_4G00298890 Rroxscaffold_4G00298900 Rroxscaffold_4G00298930 Rroxscaffold_4G00298960 Rroxscaffold_4G00299220 Rroxscaffold_5G00344530 Rroxscaffold_5G00353770 Rroxscaffold_5G00358640 Rroxscaffold_7G00202240 Rroxscaffold_7G00209000
rosa_rugosa Rorug01G0218600 Rorug01G0251800 Rorug01G0255100 Rorug01G0255200 Rorug01G0255500 Rorug01G0255700 Rorug01G0256400 Rorug01G0276200 Rorug01G0322400 Rorug02G0150200 Rorug02G0150300 Rorug02G0150400 Rorug02G0150700 Rorug02G0150800 Rorug02G0150900 Rorug02G0151000 Rorug02G0151100 Rorug02G0166000 Rorug02G0166100.1 Rorug02G0176300 Rorug02G0176400 Rorug02G0176700 Rorug03G0192200 Rorug03G0193100 Rorug04G0017700 Rorug04G0331400 Rorug05G0129400 Rorug05G0131900 Rorug05G0132200 Rorug05G0132300 Rorug05G0132300 Rorug05G0132400 Rorug05G0132500 Rorug05G0132600 Rorug05G0132700 Rorug05G0132800 Rorug05G0132900 Rorug05G0164000 Rorug05G0164000 Rorug05G0186700 Rorug05G0187000 Rorug05G0323000 Rorug05G0323000 Rorug05G0567400 Rorug07G0136000 Rorug07G0159500
rosa_samantha Rh1CG249900 Rh1CG253000 Rh1DG261400 Rh1DG264400 Rh1DG264800 Rh1DG264900 Rh1DG265600 Rh2AG218700 Rh2AG228900 Rh2AG229000 Rh2BG227800 Rh2BG241900 Rh2BG297700 Rh2DG224600 Rh2DG225000 Rh2DG236900 Rh3AG243400 Rh3CG273500 Rh4DG088000 Rh5CG246800 Rh5CG247800 Rh5CG252000 Rh5CG252100 Rh5CG252200 Rh5CG252500 Rh5CG252600 Rh5CG252800 Rh5CG253100 Rh5CG253200 Rh5CG253300 Rh5CG253900 Rh5CG254100 Rh5CG288700 Rh5CG288800 Rh5CG309700 Rh5CG309800 Rh5DG415100 Rh6BG078900 Rh6BG142900 Rh6CG073600 Rh6CG139500 Rh7CG210700
rosa_wichuraiana Rw0G015410 Rw1G023790 Rw1G023810 Rw1G023830 Rw1G023890 Rw1G023960 Rw1G024030 Rw1G024060 Rw1G024080 Rw1G024100 Rw2G015830 Rw2G015870 Rw2G015890 Rw2G016830 Rw2G016870 Rw2G016890 Rw2G017700 Rw2G017710 Rw2G017730 Rw3G021740 Rw3G026100 Rw4G007870 Rw5G020370 Rw5G020560 Rw5G020590 Rw5G020610 Rw5G020620 Rw5G020640 Rw5G020660 Rw5G023440 Rw5G023480 Rw5G025580 Rw5G025610 Rw5G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1114
Acc36I ACCTGC 1 cut(s) 906
Acc65I GGTACC 1 cut(s) 139
AccB1I GGYRCC 1 cut(s) 139
AccI GTMKAC 1 cut(s) 273
AccII CGCG 4 cut(s) 136, 939, 956, 1495
AclWI GGATC 5 cut(s) 241, 449, 1139, 1484, 1497
AcoI YGGCCR 1 cut(s) 1303
AcsI RAATTY 2 cut(s) 749, 1445
AfaI GTAC 5 cut(s) 141, 197, 229, 795, 1538
AfiI CCNNNNNNNGG 4 cut(s) 217, 682, 915, 1408
AflIII ACRYGT 1 cut(s) 1587
AgsI TTSAA 5 cut(s) 8, 79, 155, 379, 759
AjiI CACGTC 1 cut(s) 1660
AjnI CCWGG 1 cut(s) 1209
AloI GAACNNNNNNTCC 2 cut(s) 1481, 1513
Alw21I GWGCWC 1 cut(s) 805
Alw44I GTGCAC 1 cut(s) 801
AlwI GGATC 5 cut(s) 241, 449, 1139, 1484, 1497
AoxI GGCC 5 cut(s) 1060, 1303, 1356, 1542, 1608
ApaLI GTGCAC 1 cut(s) 801
ApeKI GCWGC 7 cut(s) 399, 531, 1022, 1025, 1281, 1313, 1716
ApoI RAATTY 2 cut(s) 749, 1445
Asp700I GAANNNNTTC 1 cut(s) 1163
Asp718I GGTACC 1 cut(s) 139
AspLEI GCGC 3 cut(s) 939, 958, 1115
AspS9I GGNCC 3 cut(s) 323, 948, 1543
AsuHPI GGTGA 6 cut(s) 137, 641, 934, 976, 1135, 1475
AvaII GGWCC 2 cut(s) 323, 948
BaeGI GKGCMC 1 cut(s) 805
BamHI GGATCC 1 cut(s) 1489
BanI GGYRCC 1 cut(s) 139
BarI GAAGNNNNNNTAC 2 cut(s) 1167, 1199
BauI CACGAG 1 cut(s) 1154
Bbv12I GWGCWC 1 cut(s) 805
BbvI GCAGC 6 cut(s) 411, 543, 1009, 1037, 1293, 1325
BccI CCATC 2 cut(s) 172, 1221
BceAI ACGGC 1 cut(s) 1051
BcgI CGANNNNNNTGC 2 cut(s) 290, 324
BciT130I CCWGG 1 cut(s) 1211
BclI TGATCA 1 cut(s) 924
BfaI CTAG 4 cut(s) 17, 225, 774, 1058
BfmI CTRYAG 1 cut(s) 1023
BfuAI ACCTGC 1 cut(s) 906
BisI GCNGC 9 cut(s) 357, 400, 532, 1023, 1026, 1282, 1314, 1664, 1717
BlsI GCNGC 9 cut(s) 358, 401, 533, 1024, 1027, 1283, 1315, 1665, 1718
Bme1390I CCNGG 1 cut(s) 1211
Bme18I GGWCC 2 cut(s) 323, 948
BmgBI CACGTC 1 cut(s) 1660
BmgT120I GGNCC 3 cut(s) 323, 948, 1543
BmiI GGNNCC 6 cut(s) 54, 141, 811, 1208, 1491, 1545
BmrFI CCNGG 1 cut(s) 1211
BmrI ACTGGG 1 cut(s) 792
BmsI GCATC 4 cut(s) 118, 1100, 1159, 1303
BmuI ACTGGG 1 cut(s) 792
BplI GAGNNNNNCTC 2 cut(s) 657, 689
BpuEI CTTGAG 1 cut(s) 998
BsaAI YACGTR 1 cut(s) 195
BsaJI CCNNGG 8 cut(s) 319, 960, 1063, 1105, 1306, 1359, 1493, 1611
BsaWI WCCGGW 1 cut(s) 710
BsaXI ACNNNNNCTCC 4 cut(s) 479, 509, 1558, 1588
Bsc4I CCNNNNNNNGG 4 cut(s) 217, 682, 915, 1408
Bse1I ACTGG 5 cut(s) 243, 283, 513, 798, 990
Bse3DI GCAATG 1 cut(s) 1328
BseBI CCWGG 1 cut(s) 1211
BseDI CCNNGG 8 cut(s) 319, 960, 1063, 1105, 1306, 1359, 1493, 1611
BseGI GGATG 6 cut(s) 27, 64, 183, 1115, 1232, 1444
BseLI CCNNNNNNNGG 4 cut(s) 217, 682, 915, 1408
BseMI GCAATG 1 cut(s) 1328
BseNI ACTGG 5 cut(s) 243, 283, 513, 798, 990
BseRI GAGGAG 2 cut(s) 487, 665
BseSI GKGCMC 1 cut(s) 805
BseXI GCAGC 6 cut(s) 411, 543, 1009, 1037, 1293, 1325
BseYI CCCAGC 1 cut(s) 547
BsgI GTGCAG 1 cut(s) 1235
Bsh1236I CGCG 4 cut(s) 136, 939, 956, 1495
BshFI GGCC 5 cut(s) 1062, 1305, 1358, 1544, 1610
BshNI GGYRCC 1 cut(s) 139
BsiHKAI GWGCWC 1 cut(s) 805
BsiSI CCGG 2 cut(s) 711, 1699
BslFI GGGAC 6 cut(s) 233, 564, 860, 996, 1089, 1540
BslI CCNNNNNNNGG 4 cut(s) 217, 682, 915, 1408
BsmFI GGGAC 6 cut(s) 233, 564, 860, 996, 1089, 1540
BsmI GAATGC 1 cut(s) 12
BsnI GGCC 5 cut(s) 1062, 1305, 1358, 1544, 1610
Bsp1286I GDGCHC 1 cut(s) 805
Bsp143I GATC 5 cut(s) 233, 454, 924, 1131, 1489
Bsp19I CCATGG 1 cut(s) 1306
BspANI GGCC 5 cut(s) 1062, 1305, 1358, 1544, 1610
BspFNI CGCG 4 cut(s) 136, 939, 956, 1495
BspHI TCATGA 1 cut(s) 1234
BspLI GGNNCC 6 cut(s) 54, 141, 811, 1208, 1491, 1545
BspMAI CTGCAG 1 cut(s) 1027
BspMI ACCTGC 1 cut(s) 906
BspPI GGATC 5 cut(s) 241, 449, 1139, 1484, 1497
BspQI GCTCTTC 1 cut(s) 1371
BspT107I GGYRCC 1 cut(s) 139
BsrDI GCAATG 1 cut(s) 1328
BsrI ACTGG 5 cut(s) 243, 283, 513, 798, 990
BssECI CCNNGG 8 cut(s) 319, 960, 1063, 1105, 1306, 1359, 1493, 1611
BssMI GATC 5 cut(s) 233, 454, 924, 1131, 1489
BssSI CACGAG 1 cut(s) 1154
BssT1I CCWWGG 5 cut(s) 319, 1063, 1105, 1306, 1611
Bst2BI CACGAG 1 cut(s) 1154
Bst2UI CCWGG 1 cut(s) 1211
Bst4CI ACNGT 1 cut(s) 491
Bst6I CTCTTC 4 cut(s) 367, 643, 1121, 1371
BstBAI YACGTR 1 cut(s) 195
BstC8I GCNNGC 2 cut(s) 189, 1624
BstDEI CTNAG 2 cut(s) 590, 1187
BstDSI CCRYGG 2 cut(s) 1306, 1493
BstENI CCTNNNNNAGG 1 cut(s) 680
BstF5I GGATG 6 cut(s) 27, 64, 183, 1115, 1232, 1444
BstFNI CGCG 4 cut(s) 136, 939, 956, 1495
BstHHI GCGC 3 cut(s) 939, 958, 1115
BstKTI GATC 5 cut(s) 236, 457, 927, 1134, 1492
BstMBI GATC 5 cut(s) 233, 454, 924, 1131, 1489
BstMWI GCNNNNNNNGC 4 cut(s) 59, 446, 466, 537
BstNI CCWGG 1 cut(s) 1211
BstNSI RCATGY 6 cut(s) 473, 557, 1273, 1294, 1591, 1626
BstSCI CCNGG 1 cut(s) 1209
BstSFI CTRYAG 1 cut(s) 1023
BstSLI GKGCMC 1 cut(s) 805
BstSNI TACGTA 1 cut(s) 195
BstUI CGCG 4 cut(s) 136, 939, 956, 1495
BstV1I GCAGC 6 cut(s) 411, 543, 1009, 1037, 1293, 1325
BstX2I RGATCY 2 cut(s) 1131, 1489
BstYI RGATCY 2 cut(s) 1131, 1489
BsuRI GGCC 5 cut(s) 1062, 1305, 1358, 1544, 1610
BtgI CCRYGG 2 cut(s) 1306, 1493
BtrI CACGTC 1 cut(s) 1660
BtsCI GGATG 6 cut(s) 27, 64, 183, 1115, 1232, 1444
BtsI GCAGTG 2 cut(s) 1316, 1400
BtsIMutI CAGTG 5 cut(s) 236, 276, 805, 1316, 1400
BveI ACCTGC 1 cut(s) 906
Cac8I GCNNGC 2 cut(s) 189, 1624
CciI TCATGA 1 cut(s) 1234
CfoI GCGC 3 cut(s) 939, 958, 1115
Cfr13I GGNCC 3 cut(s) 323, 948, 1543
Cfr42I CCGCGG 1 cut(s) 1496
CseI GACGC 1 cut(s) 962
CsiI ACCWGGT 1 cut(s) 1209
Csp6I GTAC 5 cut(s) 140, 196, 228, 794, 1537
CspCI CAANNNNNGTGG 2 cut(s) 1500, 1535
CviQI GTAC 5 cut(s) 140, 196, 228, 794, 1537
DdeI CTNAG 2 cut(s) 590, 1187
DpnI GATC 5 cut(s) 235, 456, 926, 1133, 1491
DpnII GATC 5 cut(s) 233, 454, 924, 1131, 1489
EaeI YGGCCR 1 cut(s) 1303
Eam1104I CTCTTC 4 cut(s) 367, 643, 1121, 1371
EarI CTCTTC 4 cut(s) 367, 643, 1121, 1371
EciI GGCGGA 1 cut(s) 343
Eco105I TACGTA 1 cut(s) 195
Eco130I CCWWGG 5 cut(s) 319, 1063, 1105, 1306, 1611
Eco32I GATATC 1 cut(s) 1414
Eco47I GGWCC 2 cut(s) 323, 948
EcoNI CCTNNNNNAGG 1 cut(s) 680
EcoRI GAATTC 2 cut(s) 749, 1445
EcoRII CCWGG 1 cut(s) 1209
EcoRV GATATC 1 cut(s) 1414
EcoT14I CCWWGG 5 cut(s) 319, 1063, 1105, 1306, 1611
EcoT22I ATGCAT 2 cut(s) 559, 1296
ErhI CCWWGG 5 cut(s) 319, 1063, 1105, 1306, 1611
FalI AAGNNNNNCTT 4 cut(s) 842, 874, 1118, 1150
FaqI GGGAC 6 cut(s) 233, 564, 860, 996, 1089, 1540
FauI CCCGC 4 cut(s) 129, 180, 533, 821
FauNDI CATATG 1 cut(s) 911
FbaI TGATCA 1 cut(s) 924
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 9 cut(s) 357, 400, 532, 1023, 1026, 1282, 1314, 1664, 1717
FokI GGATG 6 cut(s) 14, 51, 190, 1122, 1239, 1451
Fsp4HI GCNGC 9 cut(s) 357, 400, 532, 1023, 1026, 1282, 1314, 1664, 1717
FspBI CTAG 4 cut(s) 17, 225, 774, 1058
FspI TGCGCA 1 cut(s) 1114
GlaI GCGC 3 cut(s) 938, 957, 1114
GluI GCNGC 9 cut(s) 357, 400, 532, 1023, 1026, 1282, 1314, 1664, 1717
GsaI CCCAGC 1 cut(s) 551
HaeIII GGCC 5 cut(s) 1062, 1305, 1358, 1544, 1610
HapII CCGG 2 cut(s) 711, 1699
HgaI GACGC 1 cut(s) 962
HhaI GCGC 3 cut(s) 939, 958, 1115
Hin6I GCGC 3 cut(s) 937, 956, 1113
HinP1I GCGC 3 cut(s) 937, 956, 1113
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HindIII AAGCTT 2 cut(s) 760, 1457
HinfI GANTC 8 cut(s) 221, 826, 855, 973, 1142, 1198, 1504, 1580
HpaII CCGG 2 cut(s) 711, 1699
HphI GGTGA 6 cut(s) 137, 641, 934, 976, 1135, 1475
Hpy166II GTNNAC 6 cut(s) 198, 274, 631, 803, 1084, 1261
Hpy188I TCNGA 4 cut(s) 831, 996, 1147, 1585
Hpy188III TCNNGA 8 cut(s) 475, 859, 928, 977, 1074, 1154, 1235, 1501
Hpy8I GTNNAC 6 cut(s) 198, 274, 631, 803, 1084, 1261
Hpy99I CGWCG 2 cut(s) 305, 956
HpyAV CCTTC 4 cut(s) 85, 116, 1412, 1552
HpyCH4III ACNGT 1 cut(s) 491
HpyCH4IV ACGT 4 cut(s) 194, 291, 605, 1659
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 446, 466, 537
HpyF3I CTNAG 2 cut(s) 590, 1187
HpySE526I ACGT 4 cut(s) 194, 291, 605, 1659
HspAI GCGC 3 cut(s) 937, 956, 1113
KpnI GGTACC 1 cut(s) 143
Ksp22I TGATCA 1 cut(s) 924
KspI CCGCGG 1 cut(s) 1496
Kzo9I GATC 5 cut(s) 233, 454, 924, 1131, 1489
LguI GCTCTTC 1 cut(s) 1371
LmnI GCTCC 4 cut(s) 58, 815, 1310, 1390
Lsp1109I GCAGC 6 cut(s) 411, 543, 1009, 1037, 1293, 1325
LweI GCATC 4 cut(s) 118, 1100, 1159, 1303
MabI ACCWGGT 1 cut(s) 1209
MaeI CTAG 4 cut(s) 17, 225, 774, 1058
MaeII ACGT 4 cut(s) 194, 291, 605, 1659
MaeIII GTNAC 2 cut(s) 281, 685
MalI GATC 5 cut(s) 235, 456, 926, 1133, 1491
MboI GATC 5 cut(s) 233, 454, 924, 1131, 1489
MboII GAAGA 7 cut(s) 354, 630, 943, 1126, 1138, 1358, 1394
MflI RGATCY 2 cut(s) 1131, 1489
MhlI GDGCHC 1 cut(s) 805
MluCI AATT 6 cut(s) 89, 150, 411, 749, 1016, 1445
MlyI GAGTC 3 cut(s) 215, 835, 1498
MmeI TCCRAC 3 cut(s) 497, 1416, 1608
Mph1103I ATGCAT 2 cut(s) 559, 1296
MroXI GAANNNNTTC 1 cut(s) 1163
MseI TTAA 1 cut(s) 1097
MslI CAYNNNNRTG 2 cut(s) 1321, 1383
MspA1I CMGCKG 4 cut(s) 70, 540, 1495, 1719
MspI CCGG 2 cut(s) 711, 1699
MspR9I CCNGG 1 cut(s) 1211
Mva1269I GAATGC 1 cut(s) 12
MvaI CCWGG 1 cut(s) 1211
MvnI CGCG 4 cut(s) 136, 939, 956, 1495
MwoI GCNNNNNNNGC 4 cut(s) 59, 446, 466, 537
NcoI CCATGG 1 cut(s) 1306
NdeI CATATG 1 cut(s) 911
NdeII GATC 5 cut(s) 233, 454, 924, 1131, 1489
NlaIV GGNNCC 6 cut(s) 54, 141, 811, 1208, 1491, 1545
NmeAIII GCCGAG 1 cut(s) 1340
NsbI TGCGCA 1 cut(s) 1114
NsiI ATGCAT 2 cut(s) 559, 1296
NspI RCATGY 6 cut(s) 473, 557, 1273, 1294, 1591, 1626
PaeI GCATGC 1 cut(s) 1626
PagI TCATGA 1 cut(s) 1234
PciI ACATGT 1 cut(s) 1587
PciSI GCTCTTC 1 cut(s) 1371
PcsI WCGNNNNNNNCGW 2 cut(s) 297, 968
PctI GAATGC 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 1163
PfeI GAWTC 5 cut(s) 855, 973, 1142, 1198, 1580
PkrI GCNGC 9 cut(s) 358, 401, 533, 1024, 1027, 1283, 1315, 1665, 1718
PleI GAGTC 3 cut(s) 215, 834, 1498
PpsI GAGTC 3 cut(s) 215, 834, 1498
Ppu21I YACGTR 1 cut(s) 195
PscI ACATGT 1 cut(s) 1587
Psp6I CCWGG 1 cut(s) 1209
PspFI CCCAGC 1 cut(s) 547
PspGI CCWGG 1 cut(s) 1209
PspN4I GGNNCC 6 cut(s) 54, 141, 811, 1208, 1491, 1545
PspPI GGNCC 3 cut(s) 323, 948, 1543
PstI CTGCAG 1 cut(s) 1027
PsuI RGATCY 2 cut(s) 1131, 1489
PvuII CAGCTG 1 cut(s) 1719
RsaI GTAC 5 cut(s) 141, 197, 229, 795, 1538
RsaNI GTAC 5 cut(s) 140, 196, 228, 794, 1537
RseI CAYNNNNRTG 2 cut(s) 1321, 1383
SacII CCGCGG 1 cut(s) 1496
SalI GTCGAC 1 cut(s) 272
SapI GCTCTTC 1 cut(s) 1371
SaqAI TTAA 1 cut(s) 1097
SatI GCNGC 9 cut(s) 357, 400, 532, 1023, 1026, 1282, 1314, 1664, 1717
Sau3AI GATC 5 cut(s) 233, 454, 924, 1131, 1489
Sau96I GGNCC 3 cut(s) 323, 948, 1543
SchI GAGTC 3 cut(s) 215, 835, 1498
ScrFI CCNGG 1 cut(s) 1211
SduI GDGCHC 1 cut(s) 805
SexAI ACCWGGT 1 cut(s) 1209
SfaNI GCATC 4 cut(s) 118, 1100, 1159, 1303
SfcI CTRYAG 1 cut(s) 1023
Sfr303I CCGCGG 1 cut(s) 1496
SgrBI CCGCGG 1 cut(s) 1496
SinI GGWCC 2 cut(s) 323, 948
SmiMI CAYNNNNRTG 2 cut(s) 1321, 1383
SmlI CTYRAG 1 cut(s) 977
SmoI CTYRAG 1 cut(s) 977
SnaBI TACGTA 1 cut(s) 195
SphI GCATGC 1 cut(s) 1626
Sse9I AATT 6 cut(s) 89, 150, 411, 749, 1016, 1445
SspI AATATT 1 cut(s) 1164
SspMI CTAG 4 cut(s) 17, 225, 774, 1058
StyD4I CCNGG 1 cut(s) 1209
StyI CCWWGG 5 cut(s) 319, 1063, 1105, 1306, 1611
TaaI ACNGT 1 cut(s) 491
TaiI ACGT 4 cut(s) 197, 294, 608, 1662
TaqI TCGA 3 cut(s) 93, 273, 678
TaqII GACCGA 1 cut(s) 965
TasI AATT 6 cut(s) 89, 150, 411, 749, 1016, 1445
TatI WGTACW 1 cut(s) 227
TauI GCSGC 2 cut(s) 359, 1666
TfiI GAWTC 5 cut(s) 855, 973, 1142, 1198, 1580
Tru1I TTAA 1 cut(s) 1097
Tru9I TTAA 1 cut(s) 1097
TscAI CASTG 5 cut(s) 243, 283, 805, 1323, 1400
TseI GCWGC 7 cut(s) 399, 531, 1022, 1025, 1281, 1313, 1716
TspDTI ATGAA 7 cut(s) 16, 135, 162, 732, 1188, 1210, 1358
TspGWI ACGGA 3 cut(s) 318, 490, 1662
TspRI CASTG 5 cut(s) 243, 283, 805, 1323, 1400
VneI GTGCAC 1 cut(s) 801
VpaK11BI GGWCC 2 cut(s) 323, 948
XagI CCTNNNNNAGG 1 cut(s) 680
XapI RAATTY 2 cut(s) 749, 1445
XceI RCATGY 6 cut(s) 473, 557, 1273, 1294, 1591, 1626
XcmI CCANNNNNNNNNTGG 1 cut(s) 916
XmiI GTMKAC 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 1163
XspI CTAG 4 cut(s) 17, 225, 774, 1058
Zsp2I ATGCAT 2 cut(s) 559, 1296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.