MD08G1053900.v1.1

L-type lectin-domain containing receptor kinase IX.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000038
Physical Location & Seq
Reverse (-)
4213820 .. 4215670
1851 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1053900.v1.1.491

Sequence Viewer

Length: 1851 bp
ATGTTTCAAAGCATTCTAGCAAGTTTCATCCTCATTGTCATTAGTTTTTTGGCTCCCCTTGCACATCCGCTGTCCTTCAAAATAACGCAATTCGACCAAACTACAAAGAACATATCTTATGAAGGTGATGCCTCGCGGGTATCCAGAGCAATTCAACTCAACGAAAAAAGTTCATGGATGGTTGGGCGGGCTACGTACACTCTCCACCTGTGGGACTCTAGTACAGGATCACTGGCAGATTTCACTACTCATTTCACTTTCATTGTCGACACTGGTAACAAGAGCGACTTTAGTGACGGATTTGCCTTTTTCCTTGGTCCTGTTGGCCATCCAATCCCAGTAAACTCCGCCGGCTCTCTACTCGGATTATTCAACAGCACCGATGAAAGCAATAAACAAATTGTAGCTGTTGAGTTTGACACTTTCGCAAACGAAGCCTTTGATCCGCAAAAGTGGCATGTCGGGATAAACATAAACAGTATCAACTCCGTAGATACTGCCAGTTGGAAAAATGTTAGCAGCAACAGCGGGAAGCTGGGACATGCATTGATAACTTACAATGCCACTTCCAAAAACCTTAGTGTGTTTTGGACGTATGACGAAAACCCTGTTTTTGTGAACAACTCTTCTCTTTCTCACCAGATTGACTTACGAGAGGTTCTCCTCGAAAAGGTTACAATAGGATTTTCAGCTTCTACCGGAGTGTTCCCAGAACGACATCTCATATATTCTTGGGAATTCAGTTCAAGCTTGAATTTTACTAGCAAACAGAACGAAAGAAAAAGGGACAAGAGATTCTTGATAGTGGCGGTTGCAGTTTCTTTTTTCGTTTTGATGTTTTGTGTGGCCATATGCTGGTTGGTGATCAAGAAGAAGCGCGTATATAGGACCGACACACCCTCGGTGAATACGAATCTTGAGGGACTGTCATTTCCGAAACGATTTGCTTACAAAGAATTAGCTGCAGCCACCAACGGCTTTGCTAACGATGTGAAGCTAGGCCAAGGAGGTTCGGGACAAGTTTACAAAGGAATGTTAAAAGACCTTGGATGCGCAGTTGCGGTGAAGAGGATCTTCGCAGAATCAGAGCATGACGAGAAAATATTCGTCAATGAAGTCAAAATACTAAGCCGATTGATTCACAGGAACCTGGTGCAGTTCATTGGATGGTGTCATGAGCAAGGCGAGTGCTTACTTGTTTACGCATACATGCCTAATGGCAGCCTTGACAGGCATCTATTCGGCCATGGAGCAGCACTGCAATGGGATTTTCGGTATAAGATTGCTTTAGGCTTGGCCTCGGCTCTTCATTATCTACACGAAGATGTGGAGCAGTGTGTCCTTCACAGGGATATCAAATCAGCTAATGTGTTGTTGGATGACGAATTCAGCACAAAGCTTGGTGATTTTGGGATTGCGAAGCTCATGGATCCGCGGTTCAGGACTCAAACAACAGGGGTGGTGGGGACTTTCGGGTACATGGCCCCCGAATATGAGAAGGGAGGGAGGGCAAGTAAAGAATCCGACATGTTTAGCTTTGGAGTTGTGGCCTTGGAACTTGCATGCGGTAGGAGGACTTTCCATGACGGAGAACTTGACGTGCCGCTTGTGAGTTGGGTTTGGCAACTCTACCTTGCCGGAAATCTGCTCTACGCAGCTGATGAAAGGTTAGATTCGAACTTCGACATAAATGAAATGGAATGCTTGTTAATTGTGGGATTATGGTGCACTAATCCCGACAATAAGGAAAGGCCGAAAGCTGGACAAGTGATGAATGTTCTTCAGCTTGAAGCGCCATTGCCGGATCTTCCGCACGACATGCATGATCTTCCGCTGCCTCAGCTTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

617

Amino Acids

68.99

Weight (kDa)

5.89

Isoelectric Point (pI)

32.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 24 - 261 3.9e-66 Legume lectin domain
Pkinase PF00069 329 - 592 2.5e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 331 - 526 3.6e-40 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10530 AT5G65600
fragaria_vesca FvH4_1g17770 FvH4_1g19171 FvH4_1g19180 FvH4_1g19922 FvH4_1g19923 FvH4_1g19940 FvH4_1g19950 FvH4_3g19030 FvH4_3g19040 FvH4_3g19350 FvH4_3g19361 FvH4_3g19370 FvH4_3g19372 FvH4_3g19390 FvH4_3g19390 FvH4_3g19400 FvH4_3g19400 FvH4_3g23100 FvH4_3g32500 FvH4_3g39140 FvH4_4g12891 FvH4_4g12900 FvH4_5g13890 FvH4_6g23490 FvH4_7g14930 FvH4_7g14950 FvH4_7g15082 FvH4_7g16980
malus_domestica MD01G1043400.v1.1 MD01G1043500.v1.1 MD03G1232800.v1.1 MD03G1232900.v1.1 MD03G1233000.v1.1 MD03G1233100.v1.1 MD03G1233200.v1.1 MD03G1233300.v1.1 MD03G1233600.v1.1 MD03G1233700.v1.1 MD03G1233900.v1.1 MD03G1234100.v1.1 MD03G1234300.v1.1 MD03G1234400.v1.1 MD03G1234500.v1.1 MD03G1234600.v1.1 MD08G1053200.v1.1 MD08G1053400.v1.1 MD08G1053500.v1.1 MD08G1053600.v1.1 MD08G1053800.v1.1 MD08G1053900.v1.1 MD08G1054000.v1.1 MD08G1054100.v1.1 MD08G1054200.v1.1 MD08G1054400.v1.1 MD08G1054600.v1.1 MD09G1175200.v1.1 MD09G1289800.v1.1 MD09G1289900.v1.1 MD11G1253600.v1.1 MD11G1254300.v1.1 MD11G1254500.v1.1 MD11G1254900.v1.1 MD11G1255100.v1.1 MD15G1042500.v1.1 MD15G1053100.v1.1 MD15G1053200.v1.1 MD15G1307500.v1.1
prunus_persica Prupe.1G157800_v2.0.a1 Prupe.1G395700_v2.0.a1 Prupe.4G174600_v2.0.a1 Prupe.4G174800_v2.0.a1 Prupe.4G174900_v2.0.a1 Prupe.4G175000_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175300_v2.0.a1 Prupe.4G175400_v2.0.a1 Prupe.4G175500_v2.0.a1 Prupe.4G175600_v2.0.a1 Prupe.4G175700_v2.0.a1 Prupe.4G241200_v2.0.a1 Prupe.6G208500_v2.0.a1 Prupe.6G208700_v2.0.a1 Prupe.6G208800_v2.0.a1 Prupe.8G117500_v2.0.a1 Prupe.I004200_v2.0.a1 Prupe.I004300_v2.0.a1
pyrus_communis pycom03g18010 pycom03g18050 pycom03g18070 pycom03g18100 pycom08g04440 pycom09g19760 pycom11g22500 pycom11g22510 pycom11g22520
rosa_chinensis RchiOBHm_Chr1g0318811 RchiOBHm_Chr1g0329471 RchiOBHm_Chr1g0340841 RchiOBHm_Chr1g0340931 RchiOBHm_Chr1g0356861 RchiOBHm_Chr1g0357251 RchiOBHm_Chr1g0357261 RchiOBHm_Chr1g0357321 RchiOBHm_Chr1g0360231 RchiOBHm_Chr1g0365521 RchiOBHm_Chr1g0365571 RchiOBHm_Chr1g0365581 RchiOBHm_Chr2g0108101 RchiOBHm_Chr2g0108131 RchiOBHm_Chr2g0108161 RchiOBHm_Chr2g0108191 RchiOBHm_Chr2g0108201 RchiOBHm_Chr2g0110211 RchiOBHm_Chr2g0110221 RchiOBHm_Chr2g0110261 RchiOBHm_Chr2g0110301 RchiOBHm_Chr2g0111801 RchiOBHm_Chr2g0111821 RchiOBHm_Chr2g0128081 RchiOBHm_Chr2g0151141 RchiOBHm_Chr3g0469441 RchiOBHm_Chr3g0481491 RchiOBHm_Chr4g0399611 RchiOBHm_Chr4g0414891 RchiOBHm_Chr5g0031941 RchiOBHm_Chr5g0032011 RchiOBHm_Chr5g0032051 RchiOBHm_Chr5g0032101 RchiOBHm_Chr5g0032421 RchiOBHm_Chr5g0032461 RchiOBHm_Chr5g0032481 RchiOBHm_Chr5g0032541 RchiOBHm_Chr5g0032571 RchiOBHm_Chr5g0032591 RchiOBHm_Chr5g0032631 RchiOBHm_Chr5g0037251 RchiOBHm_Chr5g0037271 RchiOBHm_Chr5g0037281 RchiOBHm_Chr5g0037291 RchiOBHm_Chr5g0040701 RchiOBHm_Chr5g0040731 RchiOBHm_Chr5g0059491 RchiOBHm_Chr6g0257841 RchiOBHm_Chr6g0274701 RchiOBHm_Chr7g0212711
rosa_laevigata RLG00000002585 RLG00000002586 RLG00000008111 RLG00000009258 RLG00000012123 RLG00000014148 RLG00000014734 RLG00000017640 RLG00000017642 RLG00000017645 RLG00000017646 RLG00000017795 RLG00000017796 RLG00000017925 RLG00000017926 RLG00000020068 RLG00000023393 RLG00000024495 RLG00000028027 RLG00000028033 RLG00000028034 RLG00000028035 RLG00000028037 RLG00000028040 RLG00000028041 RLG00000028072 RLG00000028159 RLG00000028160 RLG00000033360 RLG00000033399 RLG00000033401 RLG00000033402 RLG00000033403 RLG00000033404 RLG00000033405 RLG00000033407 RLG00000033408 RLG00000033411 RLG00000033414 RLG00000033470 RLG00000033769 RLG00000033772 RLG00000033997
rosa_multiflora Rmu_co8044118.1_g000001 Rmu_co8077552.1_g000001 Rmu_co8082100.1_g000001 Rmu_co8171646.1_g000001 Rmu_co8225604.1_g000001 Rmu_co8285705.1_g000001 Rmu_co8296369.1_g000001 Rmu_co8319685.1_g000001 Rmu_co8326977.1_g000001 Rmu_co8421957.1_g000001 Rmu_co8457997.1_g000001 Rmu_co8464379.1_g000001 Rmu_co8466539.1_g000001 Rmu_sc0000055.1_g000016 Rmu_sc0000064.1_g000032 Rmu_sc0000316.1_g000004 Rmu_sc0000316.1_g000010 Rmu_sc0000316.1_g000011 Rmu_sc0000394.1_g000016 Rmu_sc0001017.1_g000022 Rmu_sc0001484.1_g000003 Rmu_sc0002530.1_g000028 Rmu_sc0002530.1_g000031 Rmu_sc0002530.1_g000035 Rmu_sc0002587.1_g000043 Rmu_sc0002719.1_g000003 Rmu_sc0002719.1_g000005 Rmu_sc0002964.1_g000011 Rmu_sc0003031.1_g000001 Rmu_sc0003031.1_g000014 Rmu_sc0003031.1_g000027 Rmu_sc0003031.1_g000053 Rmu_sc0003552.1_g000003 Rmu_sc0003656.1_g000001 Rmu_sc0003916.1_g000001 Rmu_sc0003916.1_g000003 Rmu_sc0004100.1_g000001 Rmu_sc0004129.1_g000008 Rmu_sc0004365.1_g000001 Rmu_sc0004365.1_g000002 Rmu_sc0004542.1_g000017 Rmu_sc0004792.1_g000029 Rmu_sc0004792.1_g000032 Rmu_sc0004792.1_g000034 Rmu_sc0004792.1_g000035 Rmu_sc0004927.1_g000003 Rmu_sc0004927.1_g000005 Rmu_sc0004927.1_g000013 Rmu_sc0004927.1_g000023 Rmu_sc0005002.1_g000009 Rmu_sc0005002.1_g000028 Rmu_sc0005278.1_g000024 Rmu_sc0005278.1_g000025 Rmu_sc0005375.1_g000022 Rmu_sc0005728.1_g000005 Rmu_sc0005728.1_g000007 Rmu_sc0005770.1_g000017 Rmu_sc0005808.1_g000002 Rmu_sc0005808.1_g000004 Rmu_sc0006798.1_g000002 Rmu_sc0006798.1_g000003 Rmu_sc0006798.1_g000006 Rmu_sc0006798.1_g000007 Rmu_sc0006798.1_g000011 Rmu_sc0007406.1_g000014 Rmu_sc0007406.1_g000025 Rmu_sc0007965.1_g000011 Rmu_sc0009840.1_g000001 Rmu_sc0011812.1_g000005 Rmu_sc0015491.1_g000002 Rmu_sc0019008.1_g000001 Rmu_sc0019103.1_g000001 Rmu_sc0020236.1_g000002 Rmu_sc0021706.1_g000002 Rmu_sc0022958.1_g000008 Rmu_sc0026238.1_g000001 Rmu_sc0032550.1_g000001 Rmu_sc0034983.1_g000001 Rmu_sc0039890.1_g000002 Rmu_sc0041272.1_g000001 Rmu_sc0041373.1_g000001 Rmu_ssc0000100.1_g000012 Rmu_ssc0000100.1_g000017 Rmu_ssc0000100.1_g000031 Rmu_ssc0000100.1_g000033 Rmu_ssc0000386.1_g000042
rosa_roxburghii Rroxscaffold_1G00039940 Rroxscaffold_1G00039970 Rroxscaffold_1G00039980 Rroxscaffold_1G00043650 Rroxscaffold_1G00043700 Rroxscaffold_1G00047420 Rroxscaffold_1G00047430 Rroxscaffold_1G00047450 Rroxscaffold_1G00047470 Rroxscaffold_1G00047480 Rroxscaffold_1G00047500 Rroxscaffold_1G00047510 Rroxscaffold_1G00047520 Rroxscaffold_1G00047540 Rroxscaffold_1G00047570 Rroxscaffold_1G00047690 Rroxscaffold_1G00047720 Rroxscaffold_1G00047730 Rroxscaffold_1G00047740 Rroxscaffold_1G00047880 Rroxscaffold_1G00047900 Rroxscaffold_1G00047910 Rroxscaffold_1G00047920 Rroxscaffold_1G00047940 Rroxscaffold_1G00047950 Rroxscaffold_1G00047970 Rroxscaffold_1G00047980 Rroxscaffold_1G00048000 Rroxscaffold_2G00132060 Rroxscaffold_2G00132100 Rroxscaffold_2G00132110 Rroxscaffold_2G00133580 Rroxscaffold_2G00133630 Rroxscaffold_2G00133640 Rroxscaffold_2G00135480 Rroxscaffold_2G00135490 Rroxscaffold_2G00135530 Rroxscaffold_2G00135600 Rroxscaffold_2G00135630 Rroxscaffold_4G00291170 Rroxscaffold_4G00296260 Rroxscaffold_4G00296270 Rroxscaffold_4G00298840 Rroxscaffold_4G00298890 Rroxscaffold_4G00298900 Rroxscaffold_4G00298930 Rroxscaffold_4G00298960 Rroxscaffold_4G00299220 Rroxscaffold_5G00344530 Rroxscaffold_5G00353770 Rroxscaffold_5G00358640 Rroxscaffold_7G00202240 Rroxscaffold_7G00209000
rosa_rugosa Rorug01G0218600 Rorug01G0251800 Rorug01G0255100 Rorug01G0255200 Rorug01G0255500 Rorug01G0255700 Rorug01G0256400 Rorug01G0276200 Rorug01G0322400 Rorug02G0150200 Rorug02G0150300 Rorug02G0150400 Rorug02G0150700 Rorug02G0150800 Rorug02G0150900 Rorug02G0151000 Rorug02G0151100 Rorug02G0166000 Rorug02G0166100.1 Rorug02G0176300 Rorug02G0176400 Rorug02G0176700 Rorug03G0192200 Rorug03G0193100 Rorug04G0017700 Rorug04G0331400 Rorug05G0129400 Rorug05G0131900 Rorug05G0132200 Rorug05G0132300 Rorug05G0132300 Rorug05G0132400 Rorug05G0132500 Rorug05G0132600 Rorug05G0132700 Rorug05G0132800 Rorug05G0132900 Rorug05G0164000 Rorug05G0164000 Rorug05G0186700 Rorug05G0187000 Rorug05G0323000 Rorug05G0323000 Rorug05G0567400 Rorug07G0136000 Rorug07G0159500
rosa_samantha Rh1CG249900 Rh1CG253000 Rh1DG261400 Rh1DG264400 Rh1DG264800 Rh1DG264900 Rh1DG265600 Rh2AG218700 Rh2AG228900 Rh2AG229000 Rh2BG227800 Rh2BG241900 Rh2BG297700 Rh2DG224600 Rh2DG225000 Rh2DG236900 Rh3AG243400 Rh3CG273500 Rh4DG088000 Rh5CG246800 Rh5CG247800 Rh5CG252000 Rh5CG252100 Rh5CG252200 Rh5CG252500 Rh5CG252600 Rh5CG252800 Rh5CG253100 Rh5CG253200 Rh5CG253300 Rh5CG253900 Rh5CG254100 Rh5CG288700 Rh5CG288800 Rh5CG309700 Rh5CG309800 Rh5DG415100 Rh6BG078900 Rh6BG142900 Rh6CG073600 Rh6CG139500 Rh7CG210700
rosa_wichuraiana Rw0G015410 Rw1G023790 Rw1G023810 Rw1G023830 Rw1G023890 Rw1G023960 Rw1G024030 Rw1G024060 Rw1G024080 Rw1G024100 Rw2G015830 Rw2G015870 Rw2G015890 Rw2G016830 Rw2G016870 Rw2G016890 Rw2G017700 Rw2G017710 Rw2G017730 Rw3G021740 Rw3G026100 Rw4G007870 Rw5G020370 Rw5G020560 Rw5G020590 Rw5G020610 Rw5G020620 Rw5G020640 Rw5G020660 Rw5G023440 Rw5G023480 Rw5G025580 Rw5G025610 Rw5G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1054
AccB7I CCANNNNNTGG 1 cut(s) 855
AccI GTMKAC 1 cut(s) 267
AccII CGCG 3 cut(s) 136, 879, 1435
AclWI GGATC 6 cut(s) 235, 437, 1079, 1424, 1437, 1812
AcoI YGGCCR 3 cut(s) 325, 846, 1243
AcsI RAATTY 3 cut(s) 737, 754, 1385
AcuI CTGAAG 2 cut(s) 1766, 1829
AfaI GTAC 3 cut(s) 197, 223, 1478
AfiI CCNNNNNNNGG 5 cut(s) 211, 670, 855, 1348, 1760
AflIII ACRYGT 1 cut(s) 1527
AgsI TTSAA 7 cut(s) 8, 79, 155, 373, 747, 754, 1790
AjiI CACGTC 1 cut(s) 1600
AjnI CCWGG 1 cut(s) 1149
AloI GAACNNNNNNTCC 2 cut(s) 1421, 1453
Alw21I GWGCWC 1 cut(s) 1730
Alw44I GTGCAC 1 cut(s) 1726
AlwI GGATC 6 cut(s) 235, 437, 1079, 1424, 1437, 1812
AoxI GGCC 8 cut(s) 325, 846, 1000, 1243, 1296, 1482, 1548, 1751
ApaLI GTGCAC 1 cut(s) 1726
ApeKI GCWGC 7 cut(s) 519, 962, 965, 1221, 1253, 1655, 1834
ApoI RAATTY 3 cut(s) 737, 754, 1385
Asp700I GAANNNNTTC 1 cut(s) 1103
AspLEI GCGC 3 cut(s) 879, 1055, 1795
AspS9I GGNCC 3 cut(s) 317, 888, 1483
AsuHPI GGTGA 6 cut(s) 137, 629, 874, 916, 1075, 1415
AsuII TTCGAA 1 cut(s) 1676
AvaII GGWCC 2 cut(s) 317, 888
BaeGI GKGCMC 1 cut(s) 1730
BalI TGGCCA 2 cut(s) 327, 848
BamHI GGATCC 1 cut(s) 1429
BarI GAAGNNNNNNTAC 2 cut(s) 1107, 1139
Bbv12I GWGCWC 1 cut(s) 1730
BbvCI CCTCAGC 1 cut(s) 1839
BbvI GCAGC 7 cut(s) 531, 949, 977, 1233, 1265, 1667, 1821
BccI CCATC 3 cut(s) 172, 336, 1161
BceAI ACGGC 1 cut(s) 991
BciT130I CCWGG 1 cut(s) 1151
BciVI GTATCC 1 cut(s) 151
BclI TGATCA 1 cut(s) 864
BfaI CTAG 4 cut(s) 17, 219, 762, 998
BfmI CTRYAG 1 cut(s) 963
BfoI RGCGCY 1 cut(s) 1796
BfuI GTATCC 1 cut(s) 151
BisI GCNGC 8 cut(s) 520, 963, 966, 1222, 1254, 1604, 1656, 1835
BlsI GCNGC 8 cut(s) 521, 964, 967, 1223, 1255, 1605, 1657, 1836
Bme1390I CCNGG 1 cut(s) 1151
Bme18I GGWCC 2 cut(s) 317, 888
BmgBI CACGTC 1 cut(s) 1600
BmgT120I GGNCC 3 cut(s) 317, 888, 1483
BmiI GGNNCC 4 cut(s) 54, 1148, 1431, 1485
BmrFI CCNGG 1 cut(s) 1151
BmrI ACTGGG 1 cut(s) 332
BmsI GCATC 3 cut(s) 118, 1040, 1243
BmuI ACTGGG 1 cut(s) 332
BplI GAGNNNNNCTC 2 cut(s) 645, 677
Bpu10I CCTNAGC 1 cut(s) 1839
Bpu14I TTCGAA 1 cut(s) 1676
BpuEI CTTGAG 1 cut(s) 938
BsaAI YACGTR 1 cut(s) 195
BsaJI CCNNGG 8 cut(s) 313, 900, 1003, 1045, 1246, 1299, 1433, 1551
BsaWI WCCGGW 1 cut(s) 698
BsaXI ACNNNNNCTCC 2 cut(s) 1498, 1528
Bsc4I CCNNNNNNNGG 5 cut(s) 211, 670, 855, 1348, 1760
Bse118I RCCGGY 1 cut(s) 350
Bse1I ACTGG 4 cut(s) 237, 277, 338, 501
Bse3DI GCAATG 2 cut(s) 1268, 1796
BseBI CCWGG 1 cut(s) 1151
BseDI CCNNGG 8 cut(s) 313, 900, 1003, 1045, 1246, 1299, 1433, 1551
BseGI GGATG 7 cut(s) 27, 64, 183, 328, 1055, 1172, 1384
BseLI CCNNNNNNNGG 5 cut(s) 211, 670, 855, 1348, 1760
BseMI GCAATG 2 cut(s) 1268, 1796
BseNI ACTGG 4 cut(s) 237, 277, 338, 501
BseRI GAGGAG 1 cut(s) 653
BseSI GKGCMC 1 cut(s) 1730
BseXI GCAGC 7 cut(s) 531, 949, 977, 1233, 1265, 1667, 1821
BseYI CCCAGC 1 cut(s) 535
BsgI GTGCAG 1 cut(s) 1175
Bsh1236I CGCG 3 cut(s) 136, 879, 1435
BshFI GGCC 8 cut(s) 327, 848, 1002, 1245, 1298, 1484, 1550, 1753
BsiHKAI GWGCWC 1 cut(s) 1730
BsiSI CCGG 4 cut(s) 351, 699, 1638, 1802
BslFI GGGAC 6 cut(s) 227, 552, 800, 936, 1029, 1480
BslI CCNNNNNNNGG 5 cut(s) 211, 670, 855, 1348, 1760
BsmFI GGGAC 6 cut(s) 227, 552, 800, 936, 1029, 1480
BsmI GAATGC 2 cut(s) 12, 1706
BsnI GGCC 8 cut(s) 327, 848, 1002, 1245, 1298, 1484, 1550, 1753
Bsp119I TTCGAA 1 cut(s) 1676
Bsp1286I GDGCHC 1 cut(s) 1730
Bsp143I GATC 7 cut(s) 227, 442, 864, 1071, 1429, 1804, 1825
Bsp19I CCATGG 1 cut(s) 1246
BspANI GGCC 8 cut(s) 327, 848, 1002, 1245, 1298, 1484, 1550, 1753
BspFNI CGCG 3 cut(s) 136, 879, 1435
BspHI TCATGA 1 cut(s) 1174
BspLI GGNNCC 4 cut(s) 54, 1148, 1431, 1485
BspMAI CTGCAG 1 cut(s) 967
BspPI GGATC 6 cut(s) 235, 437, 1079, 1424, 1437, 1812
BspQI GCTCTTC 1 cut(s) 1311
BspT104I TTCGAA 1 cut(s) 1676
BsrDI GCAATG 2 cut(s) 1268, 1796
BsrFI RCCGGY 1 cut(s) 350
BsrI ACTGG 4 cut(s) 237, 277, 338, 501
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 8 cut(s) 313, 900, 1003, 1045, 1246, 1299, 1433, 1551
BssMI GATC 7 cut(s) 227, 442, 864, 1071, 1429, 1804, 1825
BssT1I CCWWGG 5 cut(s) 313, 1003, 1045, 1246, 1551
Bst2UI CCWGG 1 cut(s) 1151
Bst4CI ACNGT 2 cut(s) 479, 927
Bst6I CTCTTC 3 cut(s) 631, 1061, 1311
BstAPI GCANNNNNTGC 1 cut(s) 1819
BstBAI YACGTR 1 cut(s) 195
BstBI TTCGAA 1 cut(s) 1676
BstC8I GCNNGC 3 cut(s) 189, 352, 1564
BstDEI CTNAG 3 cut(s) 578, 1127, 1839
BstDSI CCRYGG 2 cut(s) 1246, 1433
BstENI CCTNNNNNAGG 1 cut(s) 668
BstF5I GGATG 7 cut(s) 27, 64, 183, 328, 1055, 1172, 1384
BstFNI CGCG 3 cut(s) 136, 879, 1435
BstH2I RGCGCY 1 cut(s) 1796
BstHHI GCGC 3 cut(s) 879, 1055, 1795
BstKTI GATC 7 cut(s) 230, 445, 867, 1074, 1432, 1807, 1828
BstMBI GATC 7 cut(s) 227, 442, 864, 1071, 1429, 1804, 1825
BstMWI GCNNNNNNNGC 7 cut(s) 59, 434, 454, 525, 1792, 1819, 1840
BstNI CCWGG 1 cut(s) 1151
BstNSI RCATGY 6 cut(s) 461, 545, 1213, 1531, 1566, 1822
BstSCI CCNGG 1 cut(s) 1149
BstSFI CTRYAG 1 cut(s) 963
BstSLI GKGCMC 1 cut(s) 1730
BstSNI TACGTA 1 cut(s) 195
BstUI CGCG 3 cut(s) 136, 879, 1435
BstV1I GCAGC 7 cut(s) 531, 949, 977, 1233, 1265, 1667, 1821
BstX2I RGATCY 3 cut(s) 1071, 1429, 1804
BstYI RGATCY 3 cut(s) 1071, 1429, 1804
BsuI GTATCC 1 cut(s) 151
BsuRI GGCC 8 cut(s) 327, 848, 1002, 1245, 1298, 1484, 1550, 1753
BtgI CCRYGG 2 cut(s) 1246, 1433
BtrI CACGTC 1 cut(s) 1600
BtsCI GGATG 7 cut(s) 27, 64, 183, 328, 1055, 1172, 1384
BtsI GCAGTG 2 cut(s) 1256, 1340
BtsIMutI CAGTG 4 cut(s) 230, 270, 1256, 1340
Cac8I GCNNGC 3 cut(s) 189, 352, 1564
CciI TCATGA 1 cut(s) 1174
CfoI GCGC 3 cut(s) 879, 1055, 1795
Cfr10I RCCGGY 1 cut(s) 350
Cfr13I GGNCC 3 cut(s) 317, 888, 1483
Cfr42I CCGCGG 1 cut(s) 1436
CsiI ACCWGGT 1 cut(s) 1149
Csp6I GTAC 3 cut(s) 196, 222, 1477
CspCI CAANNNNNGTGG 2 cut(s) 1440, 1475
CviQI GTAC 3 cut(s) 196, 222, 1477
DdeI CTNAG 3 cut(s) 578, 1127, 1839
DpnI GATC 7 cut(s) 229, 444, 866, 1073, 1431, 1806, 1827
DpnII GATC 7 cut(s) 227, 442, 864, 1071, 1429, 1804, 1825
EaeI YGGCCR 3 cut(s) 325, 846, 1243
Eam1104I CTCTTC 3 cut(s) 631, 1061, 1311
EarI CTCTTC 3 cut(s) 631, 1061, 1311
EciI GGCGGA 1 cut(s) 337
Eco105I TACGTA 1 cut(s) 195
Eco130I CCWWGG 5 cut(s) 313, 1003, 1045, 1246, 1551
Eco32I GATATC 1 cut(s) 1354
Eco47I GGWCC 2 cut(s) 317, 888
Eco57I CTGAAG 2 cut(s) 1766, 1829
EcoNI CCTNNNNNAGG 1 cut(s) 668
EcoRI GAATTC 2 cut(s) 737, 1385
EcoRII CCWGG 1 cut(s) 1149
EcoRV GATATC 1 cut(s) 1354
EcoT14I CCWWGG 5 cut(s) 313, 1003, 1045, 1246, 1551
EcoT22I ATGCAT 2 cut(s) 547, 1824
ErhI CCWWGG 5 cut(s) 313, 1003, 1045, 1246, 1551
FalI AAGNNNNNCTT 6 cut(s) 272, 304, 782, 814, 1058, 1090
FaqI GGGAC 6 cut(s) 227, 552, 800, 936, 1029, 1480
FauI CCCGC 3 cut(s) 129, 180, 521
FauNDI CATATG 1 cut(s) 851
FbaI TGATCA 1 cut(s) 864
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 8 cut(s) 520, 963, 966, 1222, 1254, 1604, 1656, 1835
FokI GGATG 7 cut(s) 14, 51, 190, 315, 1062, 1179, 1391
Fsp4HI GCNGC 8 cut(s) 520, 963, 966, 1222, 1254, 1604, 1656, 1835
FspBI CTAG 4 cut(s) 17, 219, 762, 998
FspI TGCGCA 1 cut(s) 1054
GlaI GCGC 3 cut(s) 878, 1054, 1794
GluI GCNGC 8 cut(s) 520, 963, 966, 1222, 1254, 1604, 1656, 1835
GsaI CCCAGC 1 cut(s) 539
HaeII RGCGCY 1 cut(s) 1796
HaeIII GGCC 8 cut(s) 327, 848, 1002, 1245, 1298, 1484, 1550, 1753
HapII CCGG 4 cut(s) 351, 699, 1638, 1802
HhaI GCGC 3 cut(s) 879, 1055, 1795
Hin6I GCGC 3 cut(s) 877, 1053, 1793
HinP1I GCGC 3 cut(s) 877, 1053, 1793
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HindIII AAGCTT 2 cut(s) 748, 1397
HinfI GANTC 8 cut(s) 215, 795, 913, 1082, 1138, 1444, 1520, 1673
HpaII CCGG 4 cut(s) 351, 699, 1638, 1802
HphI GGTGA 6 cut(s) 137, 629, 874, 916, 1075, 1415
Hpy166II GTNNAC 7 cut(s) 198, 268, 343, 619, 1024, 1201, 1728
Hpy188I TCNGA 4 cut(s) 365, 936, 1087, 1525
Hpy188III TCNNGA 9 cut(s) 144, 463, 799, 868, 917, 1014, 1175, 1441, 1736
Hpy8I GTNNAC 7 cut(s) 198, 268, 343, 619, 1024, 1201, 1728
HpyAV CCTTC 4 cut(s) 85, 116, 1352, 1492
HpyCH4III ACNGT 2 cut(s) 479, 927
HpyCH4IV ACGT 3 cut(s) 194, 593, 1599
HpyCH4V TGCA 9 cut(s) 62, 545, 815, 965, 1156, 1261, 1562, 1728, 1822
HpyF10VI GCNNNNNNNGC 7 cut(s) 59, 434, 454, 525, 1792, 1819, 1840
HpyF3I CTNAG 3 cut(s) 578, 1127, 1839
HpySE526I ACGT 3 cut(s) 194, 593, 1599
HspAI GCGC 3 cut(s) 877, 1053, 1793
KroI GCCGGC 1 cut(s) 350
KroNI GCCGGC 1 cut(s) 352
Ksp22I TGATCA 1 cut(s) 864
KspI CCGCGG 1 cut(s) 1436
Kzo9I GATC 7 cut(s) 227, 442, 864, 1071, 1429, 1804, 1825
LguI GCTCTTC 1 cut(s) 1311
LmnI GCTCC 3 cut(s) 58, 1250, 1330
Lsp1109I GCAGC 7 cut(s) 531, 949, 977, 1233, 1265, 1667, 1821
LweI GCATC 3 cut(s) 118, 1040, 1243
MabI ACCWGGT 1 cut(s) 1149
MaeI CTAG 4 cut(s) 17, 219, 762, 998
MaeII ACGT 3 cut(s) 194, 593, 1599
MaeIII GTNAC 3 cut(s) 275, 293, 673
MalI GATC 7 cut(s) 229, 444, 866, 1073, 1431, 1806, 1827
MboI GATC 7 cut(s) 227, 442, 864, 1071, 1429, 1804, 1825
MboII GAAGA 9 cut(s) 618, 883, 1066, 1078, 1298, 1334, 1772, 1799, 1820
MflI RGATCY 3 cut(s) 1071, 1429, 1804
MhlI GDGCHC 1 cut(s) 1730
MlsI TGGCCA 2 cut(s) 327, 848
MluCI AATT 8 cut(s) 89, 150, 399, 737, 754, 956, 1385, 1710
MluNI TGGCCA 2 cut(s) 327, 848
MlyI GAGTC 2 cut(s) 209, 1438
MmeI TCCRAC 3 cut(s) 485, 1356, 1548
Mox20I TGGCCA 2 cut(s) 327, 848
Mph1103I ATGCAT 2 cut(s) 547, 1824
MroNI GCCGGC 1 cut(s) 350
MroXI GAANNNNTTC 1 cut(s) 1103
MscI TGGCCA 2 cut(s) 327, 848
MseI TTAA 2 cut(s) 1037, 1709
MslI CAYNNNNRTG 2 cut(s) 1261, 1323
Msp20I TGGCCA 2 cut(s) 327, 848
MspA1I CMGCKG 5 cut(s) 70, 528, 1435, 1658, 1834
MspI CCGG 4 cut(s) 351, 699, 1638, 1802
MspR9I CCNGG 1 cut(s) 1151
Mva1269I GAATGC 2 cut(s) 12, 1706
MvaI CCWGG 1 cut(s) 1151
MvnI CGCG 3 cut(s) 136, 879, 1435
MwoI GCNNNNNNNGC 7 cut(s) 59, 434, 454, 525, 1792, 1819, 1840
NaeI GCCGGC 1 cut(s) 352
NcoI CCATGG 1 cut(s) 1246
NdeI CATATG 1 cut(s) 851
NdeII GATC 7 cut(s) 227, 442, 864, 1071, 1429, 1804, 1825
NgoMIV GCCGGC 1 cut(s) 350
NlaIV GGNNCC 4 cut(s) 54, 1148, 1431, 1485
NmeAIII GCCGAG 1 cut(s) 1280
NmuCI GTSAC 1 cut(s) 293
NsbI TGCGCA 1 cut(s) 1054
NsiI ATGCAT 2 cut(s) 547, 1824
NspI RCATGY 6 cut(s) 461, 545, 1213, 1531, 1566, 1822
NspV TTCGAA 1 cut(s) 1676
PaeI GCATGC 1 cut(s) 1566
PagI TCATGA 1 cut(s) 1174
PciI ACATGT 1 cut(s) 1527
PciSI GCTCTTC 1 cut(s) 1311
PcsI WCGNNNNNNNCGW 1 cut(s) 908
PctI GAATGC 2 cut(s) 12, 1706
PdiI GCCGGC 1 cut(s) 352
PdmI GAANNNNTTC 1 cut(s) 1103
PfeI GAWTC 6 cut(s) 795, 913, 1082, 1138, 1520, 1673
PflMI CCANNNNNTGG 1 cut(s) 855
PkrI GCNGC 8 cut(s) 521, 964, 967, 1223, 1255, 1605, 1657, 1836
PleI GAGTC 2 cut(s) 209, 1438
PpsI GAGTC 2 cut(s) 209, 1438
Ppu21I YACGTR 1 cut(s) 195
PscI ACATGT 1 cut(s) 1527
Psp6I CCWGG 1 cut(s) 1149
PspFI CCCAGC 1 cut(s) 535
PspGI CCWGG 1 cut(s) 1149
PspN4I GGNNCC 4 cut(s) 54, 1148, 1431, 1485
PspPI GGNCC 3 cut(s) 317, 888, 1483
PstI CTGCAG 1 cut(s) 967
PsuI RGATCY 3 cut(s) 1071, 1429, 1804
PvuII CAGCTG 1 cut(s) 1658
RsaI GTAC 3 cut(s) 197, 223, 1478
RsaNI GTAC 3 cut(s) 196, 222, 1477
RseI CAYNNNNRTG 2 cut(s) 1261, 1323
SacII CCGCGG 1 cut(s) 1436
SalI GTCGAC 1 cut(s) 266
SapI GCTCTTC 1 cut(s) 1311
SaqAI TTAA 2 cut(s) 1037, 1709
SatI GCNGC 8 cut(s) 520, 963, 966, 1222, 1254, 1604, 1656, 1835
Sau3AI GATC 7 cut(s) 227, 442, 864, 1071, 1429, 1804, 1825
Sau96I GGNCC 3 cut(s) 317, 888, 1483
SchI GAGTC 2 cut(s) 209, 1438
ScrFI CCNGG 1 cut(s) 1151
SduI GDGCHC 1 cut(s) 1730
SexAI ACCWGGT 1 cut(s) 1149
SfaNI GCATC 3 cut(s) 118, 1040, 1243
SfcI CTRYAG 1 cut(s) 963
Sfr303I CCGCGG 1 cut(s) 1436
SfuI TTCGAA 1 cut(s) 1676
SgrBI CCGCGG 1 cut(s) 1436
SinI GGWCC 2 cut(s) 317, 888
SmiMI CAYNNNNRTG 2 cut(s) 1261, 1323
SmlI CTYRAG 1 cut(s) 917
SmoI CTYRAG 1 cut(s) 917
SnaBI TACGTA 1 cut(s) 195
SphI GCATGC 1 cut(s) 1566
Sse9I AATT 8 cut(s) 89, 150, 399, 737, 754, 956, 1385, 1710
SspI AATATT 1 cut(s) 1104
SspMI CTAG 4 cut(s) 17, 219, 762, 998
StyD4I CCNGG 1 cut(s) 1149
StyI CCWWGG 5 cut(s) 313, 1003, 1045, 1246, 1551
TaaI ACNGT 2 cut(s) 479, 927
TaiI ACGT 3 cut(s) 197, 596, 1602
TaqI TCGA 5 cut(s) 93, 267, 666, 1676, 1683
TaqII GACCGA 1 cut(s) 905
TasI AATT 8 cut(s) 89, 150, 399, 737, 754, 956, 1385, 1710
TatI WGTACW 1 cut(s) 221
TauI GCSGC 1 cut(s) 1606
TfiI GAWTC 6 cut(s) 795, 913, 1082, 1138, 1520, 1673
Tru1I TTAA 2 cut(s) 1037, 1709
Tru9I TTAA 2 cut(s) 1037, 1709
TscAI CASTG 4 cut(s) 237, 277, 1263, 1340
TseFI GTSAC 1 cut(s) 293
TseI GCWGC 7 cut(s) 519, 962, 965, 1221, 1253, 1655, 1834
Tsp45I GTSAC 1 cut(s) 293
TspGWI ACGGA 3 cut(s) 312, 478, 1602
TspRI CASTG 4 cut(s) 237, 277, 1263, 1340
Van91I CCANNNNNTGG 1 cut(s) 855
VneI GTGCAC 1 cut(s) 1726
VpaK11BI GGWCC 2 cut(s) 317, 888
XagI CCTNNNNNAGG 1 cut(s) 668
XapI RAATTY 3 cut(s) 737, 754, 1385
XceI RCATGY 6 cut(s) 461, 545, 1213, 1531, 1566, 1822
XcmI CCANNNNNNNNNTGG 1 cut(s) 856
XmiI GTMKAC 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 1103
XspI CTAG 4 cut(s) 17, 219, 762, 998
Zsp2I ATGCAT 2 cut(s) 547, 1824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.