rRNA processing/ribosome biogenesis
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 117 |
| AciI | CCGC | 1 cut(s) | 223 |
| AclWI | GGATC | 1 cut(s) | 80 |
| AdeI | CACNNNGTG | 1 cut(s) | 185 |
| AfaI | GTAC | 1 cut(s) | 297 |
| AgsI | TTSAA | 1 cut(s) | 307 |
| AluBI | AGCT | 4 cut(s) | 19, 172, 239, 271 |
| AluI | AGCT | 4 cut(s) | 19, 172, 239, 271 |
| Alw21I | GWGCWC | 1 cut(s) | 190 |
| Alw44I | GTGCAC | 1 cut(s) | 186 |
| AlwI | GGATC | 1 cut(s) | 80 |
| ApaLI | GTGCAC | 1 cut(s) | 186 |
| ApeKI | GCWGC | 3 cut(s) | 83, 176, 268 |
| AsuHPI | GGTGA | 1 cut(s) | 173 |
| BaeGI | GKGCMC | 2 cut(s) | 120, 190 |
| BanI | GGYRCC | 1 cut(s) | 117 |
| BauI | CACGAG | 1 cut(s) | 216 |
| BbsI | GAAGAC | 1 cut(s) | 201 |
| Bbv12I | GWGCWC | 1 cut(s) | 190 |
| BbvI | GCAGC | 3 cut(s) | 70, 188, 280 |
| BccI | CCATC | 1 cut(s) | 139 |
| BfmI | CTRYAG | 1 cut(s) | 259 |
| BisI | GCNGC | 3 cut(s) | 84, 177, 269 |
| BlsI | GCNGC | 3 cut(s) | 85, 178, 270 |
| BmiI | GGNNCC | 1 cut(s) | 119 |
| BmrI | ACTGGG | 1 cut(s) | 123 |
| BmsI | GCATC | 2 cut(s) | 97, 206 |
| BmuI | ACTGGG | 1 cut(s) | 123 |
| BpiI | GAAGAC | 1 cut(s) | 201 |
| BpmI | CTGGAG | 1 cut(s) | 159 |
| Bpu10I | CCTNAGC | 1 cut(s) | 240 |
| BsaBI | GATNNNNATC | 1 cut(s) | 60 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 132, 162 |
| Bse1I | ACTGG | 2 cut(s) | 118, 142 |
| Bse8I | GATNNNNATC | 1 cut(s) | 60 |
| BseGI | GGATG | 1 cut(s) | 150 |
| BseJI | GATNNNNATC | 1 cut(s) | 60 |
| BseMII | CTCAG | 1 cut(s) | 254 |
| BseNI | ACTGG | 2 cut(s) | 118, 142 |
| BseSI | GKGCMC | 2 cut(s) | 120, 190 |
| BseXI | GCAGC | 3 cut(s) | 70, 188, 280 |
| BshNI | GGYRCC | 1 cut(s) | 117 |
| BsiHKAI | GWGCWC | 1 cut(s) | 190 |
| Bsp1286I | GDGCHC | 2 cut(s) | 120, 190 |
| Bsp143I | GATC | 1 cut(s) | 72 |
| BspACI | CCGC | 1 cut(s) | 223 |
| BspCNI | CTCAG | 1 cut(s) | 253 |
| BspHI | TCATGA | 1 cut(s) | 64 |
| BspLI | GGNNCC | 1 cut(s) | 119 |
| BspPI | GGATC | 1 cut(s) | 80 |
| BspT107I | GGYRCC | 1 cut(s) | 117 |
| BsrI | ACTGG | 2 cut(s) | 118, 142 |
| BssMI | GATC | 1 cut(s) | 72 |
| BssSI | CACGAG | 1 cut(s) | 216 |
| Bst2BI | CACGAG | 1 cut(s) | 216 |
| Bst4CI | ACNGT | 1 cut(s) | 130 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 185 |
| BstC8I | GCNNGC | 2 cut(s) | 174, 186 |
| BstDEI | CTNAG | 2 cut(s) | 235, 240 |
| BstF5I | GGATG | 1 cut(s) | 150 |
| BstKTI | GATC | 1 cut(s) | 75 |
| BstMBI | GATC | 1 cut(s) | 72 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 185, 194 |
| BstSFI | CTRYAG | 1 cut(s) | 259 |
| BstSLI | GKGCMC | 2 cut(s) | 120, 190 |
| BstV1I | GCAGC | 3 cut(s) | 70, 188, 280 |
| BstV2I | GAAGAC | 1 cut(s) | 201 |
| BtsCI | GGATG | 1 cut(s) | 150 |
| BtsI | GCAGTG | 1 cut(s) | 179 |
| BtsIMutI | CAGTG | 2 cut(s) | 111, 179 |
| Cac8I | GCNNGC | 2 cut(s) | 174, 186 |
| CciI | TCATGA | 1 cut(s) | 64 |
| Csp6I | GTAC | 1 cut(s) | 296 |
| CviAII | CATG | 1 cut(s) | 65 |
| CviJI | RGCY | 5 cut(s) | 19, 83, 172, 239, 271 |
| CviKI_1 | RGCY | 5 cut(s) | 19, 83, 172, 239, 271 |
| CviQI | GTAC | 1 cut(s) | 296 |
| DdeI | CTNAG | 2 cut(s) | 235, 240 |
| DpnI | GATC | 1 cut(s) | 74 |
| DpnII | GATC | 1 cut(s) | 72 |
| DraIII | CACNNNGTG | 1 cut(s) | 185 |
| EciI | GGCGGA | 1 cut(s) | 212 |
| FaeI | CATG | 1 cut(s) | 68 |
| FaiI | YATR | 6 cut(s) | 29, 33, 66, 99, 167, 277 |
| FatI | CATG | 1 cut(s) | 64 |
| Fnu4HI | GCNGC | 3 cut(s) | 84, 177, 269 |
| FokI | GGATG | 1 cut(s) | 157 |
| Fsp4HI | GCNGC | 3 cut(s) | 84, 177, 269 |
| GluI | GCNGC | 3 cut(s) | 84, 177, 269 |
| GsuI | CTGGAG | 1 cut(s) | 159 |
| Hin1II | CATG | 1 cut(s) | 68 |
| HphI | GGTGA | 1 cut(s) | 173 |
| Hpy166II | GTNNAC | 1 cut(s) | 188 |
| Hpy188III | TCNNGA | 1 cut(s) | 65 |
| Hpy8I | GTNNAC | 1 cut(s) | 188 |
| HpyAV | CCTTC | 1 cut(s) | 7 |
| HpyCH4III | ACNGT | 1 cut(s) | 130 |
| HpyCH4IV | ACGT | 1 cut(s) | 298 |
| HpyCH4V | TGCA | 2 cut(s) | 176, 188 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 185, 194 |
| HpyF3I | CTNAG | 2 cut(s) | 235, 240 |
| HpySE526I | ACGT | 1 cut(s) | 298 |
| Hsp92II | CATG | 1 cut(s) | 68 |
| Kzo9I | GATC | 1 cut(s) | 72 |
| LmnI | GCTCC | 1 cut(s) | 16 |
| LpnPI | CCDG | 5 cut(s) | 65, 99, 123, 135, 227 |
| Lsp1109I | GCAGC | 3 cut(s) | 70, 188, 280 |
| LweI | GCATC | 2 cut(s) | 97, 206 |
| MaeII | ACGT | 1 cut(s) | 298 |
| MaeIII | GTNAC | 1 cut(s) | 130 |
| MalI | GATC | 1 cut(s) | 74 |
| MboI | GATC | 1 cut(s) | 72 |
| MboII | GAAGA | 2 cut(s) | 201, 295 |
| MhlI | GDGCHC | 2 cut(s) | 120, 190 |
| MluCI | AATT | 1 cut(s) | 34 |
| MnlI | CCTC | 3 cut(s) | 134, 145, 257 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 185, 194 |
| NdeII | GATC | 1 cut(s) | 72 |
| NlaIII | CATG | 1 cut(s) | 68 |
| NlaIV | GGNNCC | 1 cut(s) | 119 |
| NmuCI | GTSAC | 1 cut(s) | 130 |
| PagI | TCATGA | 1 cut(s) | 64 |
| PkrI | GCNGC | 3 cut(s) | 85, 178, 270 |
| PspN4I | GGNNCC | 1 cut(s) | 119 |
| RsaI | GTAC | 1 cut(s) | 297 |
| RsaNI | GTAC | 1 cut(s) | 296 |
| SatI | GCNGC | 3 cut(s) | 84, 177, 269 |
| Sau3AI | GATC | 1 cut(s) | 72 |
| SduI | GDGCHC | 2 cut(s) | 120, 190 |
| SetI | ASST | 6 cut(s) | 21, 156, 174, 241, 273, 301 |
| SfaNI | GCATC | 2 cut(s) | 97, 206 |
| SfcI | CTRYAG | 1 cut(s) | 259 |
| Sse9I | AATT | 1 cut(s) | 34 |
| SsiI | CCGC | 1 cut(s) | 223 |
| TaaI | ACNGT | 1 cut(s) | 130 |
| TaiI | ACGT | 1 cut(s) | 301 |
| TasI | AATT | 1 cut(s) | 34 |
| TscAI | CASTG | 2 cut(s) | 118, 186 |
| TseFI | GTSAC | 1 cut(s) | 130 |
| TseI | GCWGC | 3 cut(s) | 83, 176, 268 |
| Tsp45I | GTSAC | 1 cut(s) | 130 |
| TspDTI | ATGAA | 2 cut(s) | 81, 201 |
| TspRI | CASTG | 2 cut(s) | 118, 186 |
| VneI | GTGCAC | 1 cut(s) | 186 |