Rorug05G0132800

L-type lectin-domain containing receptor kinase IX.1-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
11852391 .. 11864335
11945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0132800.1

Sequence Viewer

Length: 2115 bp
ATGCGTCTTCTTCTTCTTCTTCATCGACCTCTTCATAAGCTTTCAGCCTTATCCTCAAGCACTGCTCTTCTTATGGGTTCCAAGCAGCTACTAAAGTCCACACCTTTCACAAACCCAACTCCTCCTTCTTCACAAACACACCCCTTTCACTCTCACAGACTCGTTTTCTCTGCATTTCCGCCTAAACCCAGGTCCAAAGCTCGGCCCTTTTGCCTCAGGACTAATGGGTATTCTTATGTCTCACATGCCAATGTCAAAACCCCAAAACTAGCTGATTTGGAGATAACAGATGAGCAGAGATTTGAGGCTTTGACGAAAAAGTTGAAGGAGATTGGCATTGATGATGAAATATGCGAACCAGCGCAGTATGGCCACTTAATTTGTCCAATGTGCAAAGGTGGCGATTCAGAGGAAAAGAGCTTATCCATTTTTATTGAAAAAGATTGGAGTTATGCTACTTGGCAGTGCCATCGCCGAAAATGTGATTGGAAAGGTAGAACAATGGCCTTTGCAGGAAGCAAGTCTTCTTATAAAAAATCAAAGAATAGCACGACAGATAAGACAAAAAGGGAAATCGCAGTGGAAAGTTTAGGACTGGAACCACTTTGTGAGGAGGTTCTTGCATTTTTTTCAGAGCGAGGAATATCAAGGGAAACAGTACAGAGGAATAAAGTAATGCAAAAGCGTTGTTCCATAACAGATCAGATTTCTATTGCATTTACTTATTGGAGGAATGGAAAGCTGATTAGTTGCAAGTATCGGGACATCAACAAGAAGTTCTGGCAGGAGAAGGATACTGAAAGGATTTTTTACGGGCTGGATGATATAAAGGATACAAATGATATCATCATTGTAGAAGGCGAGATGGATAAGCTTGCAATGGAAGAAGCTGGCTATCGTAATTGCGTGAGTGTGCCTGATGGTGCTCCTCCCAAGGCTTCTCCTCCCGATAAGGATGTGCCACCTGAAGAGCAGGATACAAAGTATCAATTTCTGTGGAACTGCAAAGAGTACTTAAAGAAGGAATCACGCATTATACTTGCCACTGATGGAGATGGGCCTGGTCAAGCCCTAGCTGAAGAACTTGCCCGGCGCCTTGGAAGAGAAAGATGCTGGCGAGTCAGCTGGCCAAAGAAAAATGATCAGGTTGAACACTTCAAAGATGCAAACGAGGTTCTCATGTATTTGGGACCTGCTGTATTGAAGGAAGTAATTGAGAATGCTGAATTATATCCTATTCGTGGATTGTTCAGATTTCAAGATTACTTTGATGAAATTAATGCATATTACCATCGGACATATAAACATGACTGCGGTGTCAAAACTGGGTGGAGAGATCTGGATGATTTATACAATGTTGTCCCGGGTGAGTTGACTATAGTAACAGGAGTTCCTAATTCAGGCAAGAGTGAGTGGATTGATGCTCTCTTGTGCAATCTCTATGAAGGATATGGTTGGAAATTTGCACTTTGTTCCATGGAAAACAAGGTTAGGGAGCATGCACGAAAGCTGCTGGAGAAACACATACAGAAGCCTTTCTTTGATGGACGCTATGGTGGTCCTGCTGAACGAATGAGTGTTGAAGAATTTGAGCGCGGGAAACAATGGTTAAATGACACATTTCACCTCATAAGGTGTGAGGATGATTCCCTTCCAAATATCAAATGGGTTCTTGATCTTGCACGAGCAGCAGTACTTAGGCATGGGGTGCGTGGACTTGTAATTGATCCTTACAACGAGCTTGATCATCAACGTCCACCAAACCAGACAGAAACAGAGTATGTAAGTCAGATGCTTACCAATGTCAAACGGTTTGCTCAGCATCATGCTTGTCATGTTTGGTTTGTAGCACATCCCAGACAGTTGCACCATTGGGTAGGGGGTCCTCCTAATCTTTATGATATAAGTGGAAGTGCACATTTCATAAACAAATGTGACAATGGAATTGTAATTCATCGTAATCGGGATCCAGAGGCTGGGGCCCTTGATCAAGTACAGGTCTGTGTTCGTAAGGTACGGAATAAAGTTGCAGGAACCATAGGTGACGCCTATTTGTCATATGATAGGGCAACTGGTCGATACGTGGATATTCCGAAACCAAATGGGGGGAAATAG

Protein Analysis

704

Amino Acids

80.86

Weight (kDa)

8.5

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Toprim_4 PF13662 281 - 367 8e-13 Toprim domain
Toprim PF01751 282 - 364 2e-07 Toprim domain
DnaB_C PF03796 439 - 694 2.8e-09 DnaB-like helicase C terminal domain
AAA_25 PF13481 453 - 620 4.1e-07 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10530 AT5G65600
fragaria_vesca FvH4_1g17770 FvH4_1g19171 FvH4_1g19180 FvH4_1g19922 FvH4_1g19923 FvH4_1g19940 FvH4_1g19950 FvH4_3g19030 FvH4_3g19040 FvH4_3g19350 FvH4_3g19361 FvH4_3g19370 FvH4_3g19372 FvH4_3g19390 FvH4_3g19390 FvH4_3g19400 FvH4_3g19400 FvH4_3g23100 FvH4_3g32500 FvH4_3g39140 FvH4_4g12891 FvH4_4g12900 FvH4_5g13890 FvH4_6g23490 FvH4_7g14930 FvH4_7g14950 FvH4_7g15082 FvH4_7g16980
malus_domestica MD01G1043400.v1.1 MD01G1043500.v1.1 MD03G1232800.v1.1 MD03G1232900.v1.1 MD03G1233000.v1.1 MD03G1233100.v1.1 MD03G1233200.v1.1 MD03G1233300.v1.1 MD03G1233600.v1.1 MD03G1233700.v1.1 MD03G1233900.v1.1 MD03G1234100.v1.1 MD03G1234300.v1.1 MD03G1234400.v1.1 MD03G1234500.v1.1 MD03G1234600.v1.1 MD08G1053200.v1.1 MD08G1053400.v1.1 MD08G1053500.v1.1 MD08G1053600.v1.1 MD08G1053800.v1.1 MD08G1053900.v1.1 MD08G1054000.v1.1 MD08G1054100.v1.1 MD08G1054200.v1.1 MD08G1054400.v1.1 MD08G1054600.v1.1 MD09G1175200.v1.1 MD09G1289800.v1.1 MD09G1289900.v1.1 MD11G1253600.v1.1 MD11G1254300.v1.1 MD11G1254500.v1.1 MD11G1254900.v1.1 MD11G1255100.v1.1 MD15G1042500.v1.1 MD15G1053100.v1.1 MD15G1053200.v1.1 MD15G1307500.v1.1
prunus_persica Prupe.1G157800_v2.0.a1 Prupe.1G395700_v2.0.a1 Prupe.4G174600_v2.0.a1 Prupe.4G174800_v2.0.a1 Prupe.4G174900_v2.0.a1 Prupe.4G175000_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175300_v2.0.a1 Prupe.4G175400_v2.0.a1 Prupe.4G175500_v2.0.a1 Prupe.4G175600_v2.0.a1 Prupe.4G175700_v2.0.a1 Prupe.4G241200_v2.0.a1 Prupe.6G208500_v2.0.a1 Prupe.6G208700_v2.0.a1 Prupe.6G208800_v2.0.a1 Prupe.8G117500_v2.0.a1 Prupe.I004200_v2.0.a1 Prupe.I004300_v2.0.a1
pyrus_communis pycom03g18010 pycom03g18050 pycom03g18070 pycom03g18100 pycom08g04440 pycom09g19760 pycom11g22500 pycom11g22510 pycom11g22520
rosa_chinensis RchiOBHm_Chr1g0318811 RchiOBHm_Chr1g0329471 RchiOBHm_Chr1g0340841 RchiOBHm_Chr1g0340931 RchiOBHm_Chr1g0356861 RchiOBHm_Chr1g0357251 RchiOBHm_Chr1g0357261 RchiOBHm_Chr1g0357321 RchiOBHm_Chr1g0360231 RchiOBHm_Chr1g0365521 RchiOBHm_Chr1g0365571 RchiOBHm_Chr1g0365581 RchiOBHm_Chr2g0108101 RchiOBHm_Chr2g0108131 RchiOBHm_Chr2g0108161 RchiOBHm_Chr2g0108191 RchiOBHm_Chr2g0108201 RchiOBHm_Chr2g0110211 RchiOBHm_Chr2g0110221 RchiOBHm_Chr2g0110261 RchiOBHm_Chr2g0110301 RchiOBHm_Chr2g0111801 RchiOBHm_Chr2g0111821 RchiOBHm_Chr2g0128081 RchiOBHm_Chr2g0151141 RchiOBHm_Chr3g0469441 RchiOBHm_Chr3g0481491 RchiOBHm_Chr4g0399611 RchiOBHm_Chr4g0414891 RchiOBHm_Chr5g0031941 RchiOBHm_Chr5g0032011 RchiOBHm_Chr5g0032051 RchiOBHm_Chr5g0032101 RchiOBHm_Chr5g0032421 RchiOBHm_Chr5g0032461 RchiOBHm_Chr5g0032481 RchiOBHm_Chr5g0032541 RchiOBHm_Chr5g0032571 RchiOBHm_Chr5g0032591 RchiOBHm_Chr5g0032631 RchiOBHm_Chr5g0037251 RchiOBHm_Chr5g0037271 RchiOBHm_Chr5g0037281 RchiOBHm_Chr5g0037291 RchiOBHm_Chr5g0040701 RchiOBHm_Chr5g0040731 RchiOBHm_Chr5g0059491 RchiOBHm_Chr6g0257841 RchiOBHm_Chr6g0274701 RchiOBHm_Chr7g0212711
rosa_laevigata RLG00000002585 RLG00000002586 RLG00000008111 RLG00000009258 RLG00000012123 RLG00000014148 RLG00000014734 RLG00000017640 RLG00000017642 RLG00000017645 RLG00000017646 RLG00000017795 RLG00000017796 RLG00000017925 RLG00000017926 RLG00000020068 RLG00000023393 RLG00000024495 RLG00000028027 RLG00000028033 RLG00000028034 RLG00000028035 RLG00000028037 RLG00000028040 RLG00000028041 RLG00000028072 RLG00000028159 RLG00000028160 RLG00000033360 RLG00000033399 RLG00000033401 RLG00000033402 RLG00000033403 RLG00000033404 RLG00000033405 RLG00000033407 RLG00000033408 RLG00000033411 RLG00000033414 RLG00000033470 RLG00000033769 RLG00000033772 RLG00000033997
rosa_multiflora Rmu_co8044118.1_g000001 Rmu_co8077552.1_g000001 Rmu_co8082100.1_g000001 Rmu_co8171646.1_g000001 Rmu_co8225604.1_g000001 Rmu_co8285705.1_g000001 Rmu_co8296369.1_g000001 Rmu_co8319685.1_g000001 Rmu_co8326977.1_g000001 Rmu_co8421957.1_g000001 Rmu_co8457997.1_g000001 Rmu_co8464379.1_g000001 Rmu_co8466539.1_g000001 Rmu_sc0000055.1_g000016 Rmu_sc0000064.1_g000032 Rmu_sc0000316.1_g000004 Rmu_sc0000316.1_g000010 Rmu_sc0000316.1_g000011 Rmu_sc0000394.1_g000016 Rmu_sc0001017.1_g000022 Rmu_sc0001484.1_g000003 Rmu_sc0002530.1_g000028 Rmu_sc0002530.1_g000031 Rmu_sc0002530.1_g000035 Rmu_sc0002587.1_g000043 Rmu_sc0002719.1_g000003 Rmu_sc0002719.1_g000005 Rmu_sc0002964.1_g000011 Rmu_sc0003031.1_g000001 Rmu_sc0003031.1_g000014 Rmu_sc0003031.1_g000027 Rmu_sc0003031.1_g000053 Rmu_sc0003552.1_g000003 Rmu_sc0003656.1_g000001 Rmu_sc0003916.1_g000001 Rmu_sc0003916.1_g000003 Rmu_sc0004100.1_g000001 Rmu_sc0004129.1_g000008 Rmu_sc0004365.1_g000001 Rmu_sc0004365.1_g000002 Rmu_sc0004542.1_g000017 Rmu_sc0004792.1_g000029 Rmu_sc0004792.1_g000032 Rmu_sc0004792.1_g000034 Rmu_sc0004792.1_g000035 Rmu_sc0004927.1_g000003 Rmu_sc0004927.1_g000005 Rmu_sc0004927.1_g000013 Rmu_sc0004927.1_g000023 Rmu_sc0005002.1_g000009 Rmu_sc0005002.1_g000028 Rmu_sc0005278.1_g000024 Rmu_sc0005278.1_g000025 Rmu_sc0005375.1_g000022 Rmu_sc0005728.1_g000005 Rmu_sc0005728.1_g000007 Rmu_sc0005770.1_g000017 Rmu_sc0005808.1_g000002 Rmu_sc0005808.1_g000004 Rmu_sc0006798.1_g000002 Rmu_sc0006798.1_g000003 Rmu_sc0006798.1_g000006 Rmu_sc0006798.1_g000007 Rmu_sc0006798.1_g000011 Rmu_sc0007406.1_g000014 Rmu_sc0007406.1_g000025 Rmu_sc0007965.1_g000011 Rmu_sc0009840.1_g000001 Rmu_sc0011812.1_g000005 Rmu_sc0015491.1_g000002 Rmu_sc0019008.1_g000001 Rmu_sc0019103.1_g000001 Rmu_sc0020236.1_g000002 Rmu_sc0021706.1_g000002 Rmu_sc0022958.1_g000008 Rmu_sc0026238.1_g000001 Rmu_sc0032550.1_g000001 Rmu_sc0034983.1_g000001 Rmu_sc0039890.1_g000002 Rmu_sc0041272.1_g000001 Rmu_sc0041373.1_g000001 Rmu_ssc0000100.1_g000012 Rmu_ssc0000100.1_g000017 Rmu_ssc0000100.1_g000031 Rmu_ssc0000100.1_g000033 Rmu_ssc0000386.1_g000042
rosa_roxburghii Rroxscaffold_1G00039940 Rroxscaffold_1G00039970 Rroxscaffold_1G00039980 Rroxscaffold_1G00043650 Rroxscaffold_1G00043700 Rroxscaffold_1G00047420 Rroxscaffold_1G00047430 Rroxscaffold_1G00047450 Rroxscaffold_1G00047470 Rroxscaffold_1G00047480 Rroxscaffold_1G00047500 Rroxscaffold_1G00047510 Rroxscaffold_1G00047520 Rroxscaffold_1G00047540 Rroxscaffold_1G00047570 Rroxscaffold_1G00047690 Rroxscaffold_1G00047720 Rroxscaffold_1G00047730 Rroxscaffold_1G00047740 Rroxscaffold_1G00047880 Rroxscaffold_1G00047900 Rroxscaffold_1G00047910 Rroxscaffold_1G00047920 Rroxscaffold_1G00047940 Rroxscaffold_1G00047950 Rroxscaffold_1G00047970 Rroxscaffold_1G00047980 Rroxscaffold_1G00048000 Rroxscaffold_2G00132060 Rroxscaffold_2G00132100 Rroxscaffold_2G00132110 Rroxscaffold_2G00133580 Rroxscaffold_2G00133630 Rroxscaffold_2G00133640 Rroxscaffold_2G00135480 Rroxscaffold_2G00135490 Rroxscaffold_2G00135530 Rroxscaffold_2G00135600 Rroxscaffold_2G00135630 Rroxscaffold_4G00291170 Rroxscaffold_4G00296260 Rroxscaffold_4G00296270 Rroxscaffold_4G00298840 Rroxscaffold_4G00298890 Rroxscaffold_4G00298900 Rroxscaffold_4G00298930 Rroxscaffold_4G00298960 Rroxscaffold_4G00299220 Rroxscaffold_5G00344530 Rroxscaffold_5G00353770 Rroxscaffold_5G00358640 Rroxscaffold_7G00202240 Rroxscaffold_7G00209000
rosa_rugosa Rorug01G0218600 Rorug01G0251800 Rorug01G0255100 Rorug01G0255200 Rorug01G0255500 Rorug01G0255700 Rorug01G0256400 Rorug01G0276200 Rorug01G0322400 Rorug02G0150200 Rorug02G0150300 Rorug02G0150400 Rorug02G0150700 Rorug02G0150800 Rorug02G0150900 Rorug02G0151000 Rorug02G0151100 Rorug02G0166000 Rorug02G0166100.1 Rorug02G0176300 Rorug02G0176400 Rorug02G0176700 Rorug03G0192200 Rorug03G0193100 Rorug04G0017700 Rorug04G0331400 Rorug05G0129400 Rorug05G0131900 Rorug05G0132200 Rorug05G0132300 Rorug05G0132300 Rorug05G0132400 Rorug05G0132500 Rorug05G0132600 Rorug05G0132700 Rorug05G0132800 Rorug05G0132900 Rorug05G0164000 Rorug05G0164000 Rorug05G0186700 Rorug05G0187000 Rorug05G0323000 Rorug05G0323000 Rorug05G0567400 Rorug07G0136000 Rorug07G0159500
rosa_samantha Rh1CG249900 Rh1CG253000 Rh1DG261400 Rh1DG264400 Rh1DG264800 Rh1DG264900 Rh1DG265600 Rh2AG218700 Rh2AG228900 Rh2AG229000 Rh2BG227800 Rh2BG241900 Rh2BG297700 Rh2DG224600 Rh2DG225000 Rh2DG236900 Rh3AG243400 Rh3CG273500 Rh4DG088000 Rh5CG246800 Rh5CG247800 Rh5CG252000 Rh5CG252100 Rh5CG252200 Rh5CG252500 Rh5CG252600 Rh5CG252800 Rh5CG253100 Rh5CG253200 Rh5CG253300 Rh5CG253900 Rh5CG254100 Rh5CG288700 Rh5CG288800 Rh5CG309700 Rh5CG309800 Rh5DG415100 Rh6BG078900 Rh6BG142900 Rh6CG073600 Rh6CG139500 Rh7CG210700
rosa_wichuraiana Rw0G015410 Rw1G023790 Rw1G023810 Rw1G023830 Rw1G023890 Rw1G023960 Rw1G024030 Rw1G024060 Rw1G024080 Rw1G024100 Rw2G015830 Rw2G015870 Rw2G015890 Rw2G016830 Rw2G016870 Rw2G016890 Rw2G017700 Rw2G017710 Rw2G017730 Rw3G021740 Rw3G026100 Rw4G007870 Rw5G020370 Rw5G020560 Rw5G020590 Rw5G020610 Rw5G020620 Rw5G020640 Rw5G020660 Rw5G023440 Rw5G023480 Rw5G025580 Rw5G025610 Rw5G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 531
AasI GACNNNNNNGTC 1 cut(s) 1316
Acc36I ACCTGC 1 cut(s) 1201
AccB1I GGYRCC 1 cut(s) 1092
AccB7I CCANNNNNTGG 1 cut(s) 1976
AccII CGCG 1 cut(s) 1596
AciI CCGC 3 cut(s) 179, 1314, 1596
AclWI GGATC 3 cut(s) 1721, 1961, 1974
AcoI YGGCCR 2 cut(s) 370, 1127
AcsI RAATTY 2 cut(s) 1460, 1586
AcuI CTGAAG 2 cut(s) 987, 1098
AcyI GRCGYC 2 cut(s) 1093, 2046
AdeI CACNNNGTG 1 cut(s) 608
AfaI GTAC 5 cut(s) 660, 1013, 1695, 1995, 2016
AfiI CCNNNNNNNGG 5 cut(s) 201, 1241, 1400, 1976, 2105
AgsI TTSAA 7 cut(s) 325, 437, 1151, 1159, 1204, 1259, 1583
AjnI CCWGG 2 cut(s) 188, 1060
AjuI GAANNNNNNNTTGG 4 cut(s) 109, 141, 469, 501
Alw21I GWGCWC 2 cut(s) 928, 1918
Alw26I GTCTC 1 cut(s) 244
Alw44I GTGCAC 1 cut(s) 1914
AlwI GGATC 3 cut(s) 1721, 1961, 1974
AlwNI CAGNNNCTG 1 cut(s) 1976
Ama87I CYCGRG 1 cut(s) 1363
AoxI GGCC 6 cut(s) 203, 370, 504, 1058, 1127, 1980
ApaI GGGCCC 1 cut(s) 1984
ApaLI GTGCAC 1 cut(s) 1914
ApeKI GCWGC 3 cut(s) 85, 1510, 1688
ApoI RAATTY 2 cut(s) 1460, 1586
AseI ATTAAT 1 cut(s) 1278
Asp700I GAANNNNTTC 1 cut(s) 1535
AspLEI GCGC 3 cut(s) 364, 1095, 1596
AspS9I GGNCC 8 cut(s) 192, 204, 1058, 1190, 1559, 1883, 1980, 1981
AsuC2I CCSGG 3 cut(s) 1090, 1364, 1365
AsuHPI GGTGA 3 cut(s) 1379, 1616, 2054
AvaI CYCGRG 1 cut(s) 1363
AvaII GGWCC 4 cut(s) 192, 1190, 1559, 1883
AxyI CCTNAGG 1 cut(s) 215
BaeGI GKGCMC 2 cut(s) 1918, 1984
BalI TGGCCA 2 cut(s) 372, 1129
BamHI GGATCC 1 cut(s) 1966
BanI GGYRCC 1 cut(s) 1092
BanII GRGCYC 1 cut(s) 1984
BauI CACGAG 1 cut(s) 1683
BbsI GAAGAC 1 cut(s) 516
Bbv12I GWGCWC 2 cut(s) 928, 1918
BbvI GCAGC 3 cut(s) 97, 1497, 1700
BccI CCATC 7 cut(s) 477, 859, 914, 1043, 1049, 1299, 1538
BcgI CGANNNNNNTGC 2 cut(s) 452, 486
BciT130I CCWGG 2 cut(s) 190, 1062
BciVI GTATCC 3 cut(s) 787, 826, 970
BclI TGATCA 3 cut(s) 1141, 1744, 1987
BcnI CCSGG 3 cut(s) 1090, 1364, 1365
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 2 cut(s) 269, 1073
BfmI CTRYAG 1 cut(s) 1377
BfoI RGCGCY 1 cut(s) 1096
BfuAI ACCTGC 1 cut(s) 1201
BfuI GTATCC 3 cut(s) 787, 826, 970
BglII AGATCT 1 cut(s) 1336
BisI GCNGC 3 cut(s) 86, 1511, 1689
BlpI GCTNAGC 1 cut(s) 1818
BlsI GCNGC 3 cut(s) 87, 1512, 1690
BmcAI AGTACT 2 cut(s) 1013, 1695
Bme1390I CCNGG 5 cut(s) 190, 1062, 1090, 1364, 1365
Bme18I GGWCC 4 cut(s) 192, 1190, 1559, 1883
BmeT110I CYCGRG 1 cut(s) 1363
BmgT120I GGNCC 8 cut(s) 192, 204, 1058, 1190, 1559, 1883, 1980, 1981
BmiI GGNNCC 9 cut(s) 79, 600, 1094, 1191, 1884, 1968, 1981, 1982, 2035
BmrFI CCNGG 5 cut(s) 190, 1062, 1090, 1364, 1365
BmrI ACTGGG 1 cut(s) 1335
BmsI GCATC 5 cut(s) 1100, 1153, 1411, 1782, 1831
BmuI ACTGGG 1 cut(s) 1335
BpiI GAAGAC 1 cut(s) 516
BpmI CTGGAG 1 cut(s) 1535
Bpu1102I GCTNAGC 1 cut(s) 1818
BpuEI CTTGAG 1 cut(s) 40
BpuMI CCSGG 3 cut(s) 1090, 1364, 1365
BsaAI YACGTR 1 cut(s) 2083
BsaHI GRCGYC 2 cut(s) 1093, 2046
BsaJI CCNNGG 5 cut(s) 188, 933, 1096, 1363, 1476
Bsc4I CCNNNNNNNGG 5 cut(s) 201, 1241, 1400, 1976, 2105
Bse1I ACTGG 3 cut(s) 600, 1330, 2077
Bse21I CCTNAGG 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 885
BseBI CCWGG 2 cut(s) 190, 1062
BseDI CCNNGG 5 cut(s) 188, 933, 1096, 1363, 1476
BseGI GGATG 5 cut(s) 826, 961, 1348, 1648, 1852
BseLI CCNNNNNNNGG 5 cut(s) 201, 1241, 1400, 1976, 2105
BseMI GCAATG 1 cut(s) 885
BseMII CTCAG 2 cut(s) 229, 1832
BseNI ACTGG 3 cut(s) 600, 1330, 2077
BseRI GAGGAG 4 cut(s) 111, 626, 918, 933
BseSI GKGCMC 2 cut(s) 1918, 1984
BseXI GCAGC 3 cut(s) 97, 1497, 1700
BseYI CCCAGC 1 cut(s) 1976
Bsh1236I CGCG 1 cut(s) 1596
BshFI GGCC 6 cut(s) 205, 372, 506, 1060, 1129, 1982
BshNI GGYRCC 1 cut(s) 1092
BsiHKAI GWGCWC 2 cut(s) 928, 1918
BsiHKCI CYCGRG 1 cut(s) 1363
BsiSI CCGG 2 cut(s) 1090, 1364
BslFI GGGAC 3 cut(s) 776, 1203, 1346
BslI CCNNNNNNNGG 5 cut(s) 201, 1241, 1400, 1976, 2105
BsmAI GTCTC 1 cut(s) 244
BsmFI GGGAC 3 cut(s) 776, 1203, 1346
BsmI GAATGC 1 cut(s) 1225
BsnI GGCC 6 cut(s) 205, 372, 506, 1060, 1129, 1982
BsoBI CYCGRG 1 cut(s) 1363
Bsp120I GGGCCC 1 cut(s) 1980
Bsp1286I GDGCHC 3 cut(s) 928, 1918, 1984
Bsp143I GATC 8 cut(s) 700, 1141, 1336, 1675, 1726, 1744, 1966, 1987
Bsp1720I GCTNAGC 1 cut(s) 1818
Bsp19I CCATGG 1 cut(s) 1476
BspACI CCGC 3 cut(s) 179, 1314, 1596
BspANI GGCC 6 cut(s) 205, 372, 506, 1060, 1129, 1982
BspCNI CTCAG 2 cut(s) 228, 1831
BspFNI CGCG 1 cut(s) 1596
BspLI GGNNCC 9 cut(s) 79, 600, 1094, 1191, 1884, 1968, 1981, 1982, 2035
BspMI ACCTGC 1 cut(s) 1201
BspPI GGATC 3 cut(s) 1721, 1961, 1974
BspQI GCTCTTC 2 cut(s) 72, 963
BspT107I GGYRCC 1 cut(s) 1092
BsrDI GCAATG 1 cut(s) 885
BsrI ACTGG 3 cut(s) 600, 1330, 2077
BssECI CCNNGG 5 cut(s) 188, 933, 1096, 1363, 1476
BssMI GATC 8 cut(s) 700, 1141, 1336, 1675, 1726, 1744, 1966, 1987
BssNI GRCGYC 2 cut(s) 1093, 2046
BssSI CACGAG 1 cut(s) 1683
BssT1I CCWWGG 3 cut(s) 933, 1096, 1476
Bst2BI CACGAG 1 cut(s) 1683
Bst2UI CCWGG 2 cut(s) 190, 1062
Bst4CI ACNGT 3 cut(s) 658, 1812, 1863
Bst6I CTCTTC 4 cut(s) 36, 72, 963, 1096
BstACI GRCGYC 2 cut(s) 1093, 2046
BstAPI GCANNNNNTGC 1 cut(s) 1708
BstBAI YACGTR 1 cut(s) 2083
BstC8I GCNNGC 5 cut(s) 876, 892, 1115, 1127, 1500
BstDEI CTNAG 3 cut(s) 215, 1697, 1818
BstDSI CCRYGG 1 cut(s) 1476
BstENI CCTNNNNNAGG 1 cut(s) 1398
BstF5I GGATG 5 cut(s) 826, 961, 1348, 1648, 1852
BstFNI CGCG 1 cut(s) 1596
BstH2I RGCGCY 1 cut(s) 1096
BstHHI GCGC 3 cut(s) 364, 1095, 1596
BstKTI GATC 8 cut(s) 703, 1144, 1339, 1678, 1729, 1747, 1969, 1990
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 8 cut(s) 700, 1141, 1336, 1675, 1726, 1744, 1966, 1987
BstMWI GCNNNNNNNGC 3 cut(s) 399, 1688, 1708
BstNI CCWGG 2 cut(s) 190, 1062
BstNSI RCATGY 2 cut(s) 248, 1502
BstSCI CCNGG 5 cut(s) 188, 1060, 1088, 1362, 1363
BstSFI CTRYAG 1 cut(s) 1377
BstSLI GKGCMC 2 cut(s) 1918, 1984
BstUI CGCG 1 cut(s) 1596
BstV1I GCAGC 3 cut(s) 97, 1497, 1700
BstV2I GAAGAC 1 cut(s) 516
BstX2I RGATCY 2 cut(s) 1336, 1966
BstYI RGATCY 2 cut(s) 1336, 1966
Bsu36I CCTNAGG 1 cut(s) 215
BsuI GTATCC 3 cut(s) 787, 826, 970
BsuRI GGCC 6 cut(s) 205, 372, 506, 1060, 1129, 1982
BtgI CCRYGG 1 cut(s) 1476
BtgZI GCGATG 1 cut(s) 455
BtsCI GGATG 5 cut(s) 826, 961, 1348, 1648, 1852
BtsI GCAGTG 3 cut(s) 60, 470, 585
BtsIMutI CAGTG 4 cut(s) 60, 470, 585, 1044
BveI ACCTGC 1 cut(s) 1201
Cac8I GCNNGC 5 cut(s) 876, 892, 1115, 1127, 1500
CaiI CAGNNNCTG 1 cut(s) 1976
CfoI GCGC 3 cut(s) 364, 1095, 1596
Cfr13I GGNCC 8 cut(s) 192, 204, 1058, 1190, 1559, 1883, 1980, 1981
Cfr9I CCCGGG 1 cut(s) 1363
CseI GACGC 2 cut(s) 1557, 2054
Csp6I GTAC 5 cut(s) 659, 1012, 1694, 1994, 2015
CspCI CAANNNNNGTGG 4 cut(s) 362, 397, 977, 1012
CviAII CATG 8 cut(s) 245, 1180, 1307, 1477, 1499, 1703, 1826, 1835
CviQI GTAC 5 cut(s) 659, 1012, 1694, 1994, 2015
DdeI CTNAG 3 cut(s) 215, 1697, 1818
DinI GGCGCC 1 cut(s) 1094
DpnI GATC 8 cut(s) 702, 1143, 1338, 1677, 1728, 1746, 1968, 1989
DpnII GATC 8 cut(s) 700, 1141, 1336, 1675, 1726, 1744, 1966, 1987
DraIII CACNNNGTG 1 cut(s) 608
DrdI GACNNNNNNGTC 1 cut(s) 1316
DseDI GACNNNNNNGTC 1 cut(s) 1316
EaeI YGGCCR 2 cut(s) 370, 1127
Eam1104I CTCTTC 4 cut(s) 36, 72, 963, 1096
EarI CTCTTC 4 cut(s) 36, 72, 963, 1096
EciI GGCGGA 1 cut(s) 168
Eco130I CCWWGG 3 cut(s) 933, 1096, 1476
Eco24I GRGCYC 1 cut(s) 1984
Eco32I GATATC 1 cut(s) 844
Eco47I GGWCC 4 cut(s) 192, 1190, 1559, 1883
Eco57I CTGAAG 2 cut(s) 987, 1098
Eco81I CCTNAGG 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 1363
EcoNI CCTNNNNNAGG 1 cut(s) 1398
EcoO109I RGGNCCY 4 cut(s) 1190, 1883, 1980, 1981
EcoRII CCWGG 2 cut(s) 188, 1060
EcoRV GATATC 1 cut(s) 844
EcoT14I CCWWGG 3 cut(s) 933, 1096, 1476
EcoT22I ATGCAT 1 cut(s) 1285
EcoT38I GRGCYC 1 cut(s) 1984
EgeI GGCGCC 1 cut(s) 1094
EheI GGCGCC 1 cut(s) 1094
ErhI CCWWGG 3 cut(s) 933, 1096, 1476
FaeI CATG 8 cut(s) 248, 1183, 1310, 1480, 1502, 1706, 1829, 1838
FalI AAGNNNNNCTT 4 cut(s) 508, 540, 1523, 1555
FaqI GGGAC 3 cut(s) 776, 1203, 1346
FatI CATG 8 cut(s) 244, 1179, 1306, 1476, 1498, 1702, 1825, 1834
FauI CCCGC 1 cut(s) 1589
FauNDI CATATG 1 cut(s) 2059
FbaI TGATCA 3 cut(s) 1141, 1744, 1987
Fnu4HI GCNGC 3 cut(s) 86, 1511, 1689
FokI GGATG 5 cut(s) 833, 968, 1355, 1655, 1839
FriOI GRGCYC 1 cut(s) 1984
Fsp4HI GCNGC 3 cut(s) 86, 1511, 1689
FspBI CTAG 2 cut(s) 269, 1073
GlaI GCGC 3 cut(s) 363, 1094, 1595
GluI GCNGC 3 cut(s) 86, 1511, 1689
GsaI CCCAGC 1 cut(s) 1980
GsuI CTGGAG 1 cut(s) 1535
HaeII RGCGCY 1 cut(s) 1096
HaeIII GGCC 6 cut(s) 205, 372, 506, 1060, 1129, 1982
HapII CCGG 2 cut(s) 1090, 1364
HgaI GACGC 2 cut(s) 1557, 2054
HhaI GCGC 3 cut(s) 364, 1095, 1596
Hin1I GRCGYC 2 cut(s) 1093, 2046
Hin1II CATG 8 cut(s) 248, 1183, 1310, 1480, 1502, 1706, 1829, 1838
Hin6I GCGC 3 cut(s) 362, 1093, 1594
HinP1I GCGC 3 cut(s) 362, 1093, 1594
HincII GTYRAC 1 cut(s) 1374
HindII GTYRAC 1 cut(s) 1374
HindIII AAGCTT 2 cut(s) 38, 872
HinfI GANTC 5 cut(s) 159, 404, 1025, 1119, 1646
HpaII CCGG 2 cut(s) 1090, 1364
HphI GGTGA 3 cut(s) 1379, 1616, 2054
Hpy166II GTNNAC 5 cut(s) 99, 1374, 1715, 1757, 1916
Hpy188I TCNGA 7 cut(s) 409, 634, 705, 1253, 1296, 1791, 2094
Hpy188III TCNNGA 8 cut(s) 217, 761, 947, 1259, 1340, 1673, 1964, 1970
Hpy8I GTNNAC 5 cut(s) 99, 1374, 1715, 1757, 1916
HpyAV CCTTC 8 cut(s) 135, 319, 784, 851, 1015, 1198, 1439, 1661
HpyCH4III ACNGT 3 cut(s) 658, 1812, 1863
HpyCH4IV ACGT 2 cut(s) 1753, 2082
HpyF10VI GCNNNNNNNGC 3 cut(s) 399, 1688, 1708
HpyF3I CTNAG 3 cut(s) 215, 1697, 1818
HpySE526I ACGT 2 cut(s) 1753, 2082
Hsp92I GRCGYC 2 cut(s) 1093, 2046
Hsp92II CATG 8 cut(s) 248, 1183, 1310, 1480, 1502, 1706, 1829, 1838
HspAI GCGC 3 cut(s) 362, 1093, 1594
KasI GGCGCC 1 cut(s) 1092
Ksp22I TGATCA 3 cut(s) 1141, 1744, 1987
Kzo9I GATC 8 cut(s) 700, 1141, 1336, 1675, 1726, 1744, 1966, 1987
LguI GCTCTTC 2 cut(s) 72, 963
LmnI GCTCC 2 cut(s) 931, 1495
Lsp1109I GCAGC 3 cut(s) 97, 1497, 1700
LweI GCATC 5 cut(s) 1100, 1153, 1411, 1782, 1831
MaeI CTAG 2 cut(s) 269, 1073
MaeII ACGT 2 cut(s) 1753, 2082
MaeIII GTNAC 3 cut(s) 1381, 1934, 2042
MalI GATC 8 cut(s) 702, 1143, 1338, 1677, 1728, 1746, 1968, 1989
MboI GATC 8 cut(s) 700, 1141, 1336, 1675, 1726, 1744, 1966, 1987
MflI RGATCY 2 cut(s) 1336, 1966
MhlI GDGCHC 3 cut(s) 928, 1918, 1984
MlsI TGGCCA 2 cut(s) 372, 1129
MluNI TGGCCA 2 cut(s) 372, 1129
Mly113I GGCGCC 1 cut(s) 1093
MlyI GAGTC 2 cut(s) 153, 1128
MmeI TCCRAC 1 cut(s) 1436
Mox20I TGGCCA 2 cut(s) 372, 1129
Mph1103I ATGCAT 1 cut(s) 1285
MroXI GAANNNNTTC 1 cut(s) 1535
MscI TGGCCA 2 cut(s) 372, 1129
MseI TTAA 4 cut(s) 377, 1016, 1278, 1610
MslI CAYNNNNRTG 1 cut(s) 249
Msp20I TGGCCA 2 cut(s) 372, 1129
MspA1I CMGCKG 1 cut(s) 1125
MspI CCGG 2 cut(s) 1090, 1364
MspR9I CCNGG 5 cut(s) 190, 1062, 1090, 1364, 1365
Mva1269I GAATGC 1 cut(s) 1225
MvaI CCWGG 2 cut(s) 190, 1062
MvnI CGCG 1 cut(s) 1596
MwoI GCNNNNNNNGC 3 cut(s) 399, 1688, 1708
NarI GGCGCC 1 cut(s) 1093
NciI CCSGG 3 cut(s) 1090, 1364, 1365
NcoI CCATGG 1 cut(s) 1476
NdeI CATATG 1 cut(s) 2059
NdeII GATC 8 cut(s) 700, 1141, 1336, 1675, 1726, 1744, 1966, 1987
NlaIII CATG 8 cut(s) 248, 1183, 1310, 1480, 1502, 1706, 1829, 1838
NlaIV GGNNCC 9 cut(s) 79, 600, 1094, 1191, 1884, 1968, 1981, 1982, 2035
NmeAIII GCCGAG 1 cut(s) 181
NmuCI GTSAC 2 cut(s) 1934, 2042
NsiI ATGCAT 1 cut(s) 1285
NspI RCATGY 2 cut(s) 248, 1502
PaeI GCATGC 1 cut(s) 1502
PciSI GCTCTTC 2 cut(s) 72, 963
PctI GAATGC 1 cut(s) 1225
PdmI GAANNNNTTC 1 cut(s) 1535
PfeI GAWTC 3 cut(s) 404, 1025, 1646
PflMI CCANNNNNTGG 1 cut(s) 1976
PkrI GCNGC 3 cut(s) 87, 1512, 1690
PleI GAGTC 2 cut(s) 153, 1127
PluTI GGCGCC 1 cut(s) 1096
PpsI GAGTC 2 cut(s) 153, 1127
Ppu21I YACGTR 1 cut(s) 2083
PpuMI RGGWCCY 2 cut(s) 1190, 1883
PshBI ATTAAT 1 cut(s) 1278
PsiI TTATAA 1 cut(s) 531
Psp5II RGGWCCY 2 cut(s) 1190, 1883
Psp6I CCWGG 2 cut(s) 188, 1060
PspFI CCCAGC 1 cut(s) 1976
PspGI CCWGG 2 cut(s) 188, 1060
PspN4I GGNNCC 9 cut(s) 79, 600, 1094, 1191, 1884, 1968, 1981, 1982, 2035
PspOMI GGGCCC 1 cut(s) 1980
PspPI GGNCC 8 cut(s) 192, 204, 1058, 1190, 1559, 1883, 1980, 1981
PspPPI RGGWCCY 2 cut(s) 1190, 1883
PsrI GAACNNNNNNTAC 2 cut(s) 1374, 1406
PstNI CAGNNNCTG 1 cut(s) 1976
PsuI RGATCY 2 cut(s) 1336, 1966
PvuII CAGCTG 1 cut(s) 1125
RsaI GTAC 5 cut(s) 660, 1013, 1695, 1995, 2016
RsaNI GTAC 5 cut(s) 659, 1012, 1694, 1994, 2015
RseI CAYNNNNRTG 1 cut(s) 249
SapI GCTCTTC 2 cut(s) 72, 963
SaqAI TTAA 4 cut(s) 377, 1016, 1278, 1610
SatI GCNGC 3 cut(s) 86, 1511, 1689
Sau3AI GATC 8 cut(s) 700, 1141, 1336, 1675, 1726, 1744, 1966, 1987
Sau96I GGNCC 8 cut(s) 192, 204, 1058, 1190, 1559, 1883, 1980, 1981
ScaI AGTACT 2 cut(s) 1013, 1695
SchI GAGTC 2 cut(s) 153, 1128
ScrFI CCNGG 5 cut(s) 190, 1062, 1090, 1364, 1365
SduI GDGCHC 3 cut(s) 928, 1918, 1984
SfaNI GCATC 5 cut(s) 1100, 1153, 1411, 1782, 1831
SfcI CTRYAG 1 cut(s) 1377
SfoI GGCGCC 1 cut(s) 1094
SinI GGWCC 4 cut(s) 192, 1190, 1559, 1883
SmaI CCCGGG 1 cut(s) 1365
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
SphI GCATGC 1 cut(s) 1502
SsiI CCGC 3 cut(s) 179, 1314, 1596
SspDI GGCGCC 1 cut(s) 1092
SspMI CTAG 2 cut(s) 269, 1073
StyD4I CCNGG 5 cut(s) 188, 1060, 1088, 1362, 1363
StyI CCWWGG 3 cut(s) 933, 1096, 1476
TaaI ACNGT 3 cut(s) 658, 1812, 1863
TaiI ACGT 2 cut(s) 1756, 2085
TaqI TCGA 2 cut(s) 25, 2077
TatI WGTACW 4 cut(s) 658, 1011, 1693, 1993
TfiI GAWTC 3 cut(s) 404, 1025, 1646
Tru1I TTAA 4 cut(s) 377, 1016, 1278, 1610
Tru9I TTAA 4 cut(s) 377, 1016, 1278, 1610
TscAI CASTG 4 cut(s) 67, 470, 585, 1051
TseFI GTSAC 2 cut(s) 1934, 2042
TseI GCWGC 3 cut(s) 85, 1510, 1688
Tsp45I GTSAC 2 cut(s) 1934, 2042
TspDTI ATGAA 7 cut(s) 11, 23, 360, 1287, 1458, 1912, 1943
TspGWI ACGGA 1 cut(s) 2032
TspMI CCCGGG 1 cut(s) 1363
TspRI CASTG 4 cut(s) 67, 470, 585, 1051
Van91I CCANNNNNTGG 1 cut(s) 1976
VneI GTGCAC 1 cut(s) 1914
VpaK11BI GGWCC 4 cut(s) 192, 1190, 1559, 1883
VspI ATTAAT 1 cut(s) 1278
XagI CCTNNNNNAGG 1 cut(s) 1398
XapI RAATTY 2 cut(s) 1460, 1586
XceI RCATGY 2 cut(s) 248, 1502
XcmI CCANNNNNNNNNTGG 1 cut(s) 1662
XmaI CCCGGG 1 cut(s) 1363
XmnI GAANNNNTTC 1 cut(s) 1535
XspI CTAG 2 cut(s) 269, 1073
ZrmI AGTACT 2 cut(s) 1013, 1695
Zsp2I ATGCAT 1 cut(s) 1285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.