RchiOBHm_Chr4g0414891

L-type lectin-domain containing receptor kinase IX.1-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
39410565 .. 39412568
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38522

Sequence Viewer

Length: 2004 bp
ATGTCTGTAAGCAGAAGCAACCAGGCAATCTGCTTATGCAATCTTTGCTTCTTAAGTTTCATAATTTTTTTCCCTCACTTTTCTCATCCACTTTCCTTCAGCATAAATCAATTCAACGCTGCTACAAAGGGGGTTGTCTACCAAGGTGATGCCTGGCCTTCGTCGGAAGTGATTGAGCTCAACAAAATAACTTATAAATACCGTGTTGGACGGGCTATGTATGCCGAGCCTTTGCATCTATGGAACAGTAACAGTACTACTGGGCCACTCGCCGACTTCAGTACTCATTTCACTTTCATGGTCGACACTGATAATAGCGAAGTCTTCAGTGATGGAGTTGCCTTTTTCCTATCTCCCGTGGGCTATCAGTTTCCGCCAGACTTTTCAGTTGGTGGTCTAGGACTCTTCAACACCCATGCCAGTACTCTTAATGCTTCCCAAAGCCAAGTTGTAAGCGTGGAGTTTGATACTTGGTCGAACAACGAATGGGATCCACCAGGACCTCATATTGGGATCAATATCAAAGATGTCGCTTCAGTTGTTTACGCCGATTGGAATGTTAGCATCATCTCGGGGAAGCTTGGTAATGCATGGATAACTTATAGCGCTACTGCCAACAACCTTACTGTGTTTTGGACGTTCACTGAGAAATTTGACCCTGCGTCTTTGGGGAATGCTTCTTCTATCACTTACCATGTTGACTTGCGAAAGGTTCTTCCCGAATGGGTTACAATCGGTTTTTCTGCTTCAAGTGGAGAATTCTCTGAGCGGCATGTCATAAGTTCATGGGAATTCAATTCAACTTTGGTTGATAACGATATTACAAGGGGCAAAATCAAGCAGAAGAAGAAGAAGAAGAAGAAGACATTCTTGATATTGGTCATTGCAATTCTTGGCTTCACTCTGATGCTTGGTGTCGTCGTATGTTGGTTAGTGGTATCAAGGAAGAGGAGAAACAATAACTCCCAGGATGTGTCCACTGTAAATACAGATCTTGAGAGAGTGACCTTGCCAAAACGATTTGGTTACAAGGAATTAGTTGCTGCTACGGACAACTTTGCAAGCGATAGAAGGCTAGGCCAAGGAGGATCCGGACAGGTATATAAAGGACTCCTACAAGATCTTGGAGGTTGCACAGTTGCTGTGAAGAGACTCTTTGCAGAATCTAATCAGCAATATGAGAAGGTCTTCATTAATGAAGTCAGAATCATAAGCCGCGTAATCCATCGAAACCTGGTGCAGTTCATTGGATGGTGTCATGAGCAGGGTGAATGCTTACTTGTTTATGCATACATGCCTAACACCAGCCTTGACACCCACCTATTTGGCACCAGAACAACCCTTCAATGGGATAACAGGTACAAGATAGCTTTAGGCTTAGTCTCAGCCCTTCATTATCTACATGAGGAGGCAGAGCAATGTGTCCTTCATAGGGATATCAAATCAGCCAACGTAATGTTGGATAACGACTTCAGCACTAAGCTTGGTGATTTTGGCATTGCTAAGCTCGTGGATCCCCGGTTCAGGACTCAGACAAGAGGAGTAGTAGGGACTTTTGGATACATGGCCCCAGAATATGCTAATGAAGGAAAGGCTAGTAAGGAATCTGACATGTTTAGTTTTGGAGTTGTAGCCTTGGAAATTGCATGTGGAAGGAAGACATACCAACATGGAGAATATCACTTGCCACTTTTTAGTTGGGTTTTCCAGTTACACCTTGCAGGAAATCTTCTTGATGCAGCTGATGAAAGATTAGAAATGAATTATAATGAAAATGAAATGAAATGCCTGTTGATTGTTGGACTATGGTGTACTCACCGCAACAACAAGAAAAGACCAAAAGCAGGGCAAGTAATGAAGGTTCTTCAGCTTGAAGCACCATTACCAGAACTTCCAAGGGACATGCATGATCATTCAGTACAACCTGAACATCAACTACAAACTCAGGCTGCTTCCTCTCAGATATCCTTAACTTCTTCTAGCCTTGTTACTGTGGGTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

667

Amino Acids

74.88

Weight (kDa)

7.06

Isoelectric Point (pI)

36.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 31 - 274 5.9e-64 Legume lectin domain
Pkinase PF00069 355 - 620 7.7e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 356 - 619 6.4e-42 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10530 AT5G65600
fragaria_vesca FvH4_1g17770 FvH4_1g19171 FvH4_1g19180 FvH4_1g19922 FvH4_1g19923 FvH4_1g19940 FvH4_1g19950 FvH4_3g19030 FvH4_3g19040 FvH4_3g19350 FvH4_3g19361 FvH4_3g19370 FvH4_3g19372 FvH4_3g19390 FvH4_3g19390 FvH4_3g19400 FvH4_3g19400 FvH4_3g23100 FvH4_3g32500 FvH4_3g39140 FvH4_4g12891 FvH4_4g12900 FvH4_5g13890 FvH4_6g23490 FvH4_7g14930 FvH4_7g14950 FvH4_7g15082 FvH4_7g16980
malus_domestica MD01G1043400.v1.1 MD01G1043500.v1.1 MD03G1232800.v1.1 MD03G1232900.v1.1 MD03G1233000.v1.1 MD03G1233100.v1.1 MD03G1233200.v1.1 MD03G1233300.v1.1 MD03G1233600.v1.1 MD03G1233700.v1.1 MD03G1233900.v1.1 MD03G1234100.v1.1 MD03G1234300.v1.1 MD03G1234400.v1.1 MD03G1234500.v1.1 MD03G1234600.v1.1 MD08G1053200.v1.1 MD08G1053400.v1.1 MD08G1053500.v1.1 MD08G1053600.v1.1 MD08G1053800.v1.1 MD08G1053900.v1.1 MD08G1054000.v1.1 MD08G1054100.v1.1 MD08G1054200.v1.1 MD08G1054400.v1.1 MD08G1054600.v1.1 MD09G1175200.v1.1 MD09G1289800.v1.1 MD09G1289900.v1.1 MD11G1253600.v1.1 MD11G1254300.v1.1 MD11G1254500.v1.1 MD11G1254900.v1.1 MD11G1255100.v1.1 MD15G1042500.v1.1 MD15G1053100.v1.1 MD15G1053200.v1.1 MD15G1307500.v1.1
prunus_persica Prupe.1G157800_v2.0.a1 Prupe.1G395700_v2.0.a1 Prupe.4G174600_v2.0.a1 Prupe.4G174800_v2.0.a1 Prupe.4G174900_v2.0.a1 Prupe.4G175000_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175300_v2.0.a1 Prupe.4G175400_v2.0.a1 Prupe.4G175500_v2.0.a1 Prupe.4G175600_v2.0.a1 Prupe.4G175700_v2.0.a1 Prupe.4G241200_v2.0.a1 Prupe.6G208500_v2.0.a1 Prupe.6G208700_v2.0.a1 Prupe.6G208800_v2.0.a1 Prupe.8G117500_v2.0.a1 Prupe.I004200_v2.0.a1 Prupe.I004300_v2.0.a1
pyrus_communis pycom03g18010 pycom03g18050 pycom03g18070 pycom03g18100 pycom08g04440 pycom09g19760 pycom11g22500 pycom11g22510 pycom11g22520
rosa_chinensis RchiOBHm_Chr1g0318811 RchiOBHm_Chr1g0329471 RchiOBHm_Chr1g0340841 RchiOBHm_Chr1g0340931 RchiOBHm_Chr1g0356861 RchiOBHm_Chr1g0357251 RchiOBHm_Chr1g0357261 RchiOBHm_Chr1g0357321 RchiOBHm_Chr1g0360231 RchiOBHm_Chr1g0365521 RchiOBHm_Chr1g0365571 RchiOBHm_Chr1g0365581 RchiOBHm_Chr2g0108101 RchiOBHm_Chr2g0108131 RchiOBHm_Chr2g0108161 RchiOBHm_Chr2g0108191 RchiOBHm_Chr2g0108201 RchiOBHm_Chr2g0110211 RchiOBHm_Chr2g0110221 RchiOBHm_Chr2g0110261 RchiOBHm_Chr2g0110301 RchiOBHm_Chr2g0111801 RchiOBHm_Chr2g0111821 RchiOBHm_Chr2g0128081 RchiOBHm_Chr2g0151141 RchiOBHm_Chr3g0469441 RchiOBHm_Chr3g0481491 RchiOBHm_Chr4g0399611 RchiOBHm_Chr4g0414891 RchiOBHm_Chr5g0031941 RchiOBHm_Chr5g0032011 RchiOBHm_Chr5g0032051 RchiOBHm_Chr5g0032101 RchiOBHm_Chr5g0032421 RchiOBHm_Chr5g0032461 RchiOBHm_Chr5g0032481 RchiOBHm_Chr5g0032541 RchiOBHm_Chr5g0032571 RchiOBHm_Chr5g0032591 RchiOBHm_Chr5g0032631 RchiOBHm_Chr5g0037251 RchiOBHm_Chr5g0037271 RchiOBHm_Chr5g0037281 RchiOBHm_Chr5g0037291 RchiOBHm_Chr5g0040701 RchiOBHm_Chr5g0040731 RchiOBHm_Chr5g0059491 RchiOBHm_Chr6g0257841 RchiOBHm_Chr6g0274701 RchiOBHm_Chr7g0212711
rosa_laevigata RLG00000002585 RLG00000002586 RLG00000008111 RLG00000009258 RLG00000012123 RLG00000014148 RLG00000014734 RLG00000017640 RLG00000017642 RLG00000017645 RLG00000017646 RLG00000017795 RLG00000017796 RLG00000017925 RLG00000017926 RLG00000020068 RLG00000023393 RLG00000024495 RLG00000028027 RLG00000028033 RLG00000028034 RLG00000028035 RLG00000028037 RLG00000028040 RLG00000028041 RLG00000028072 RLG00000028159 RLG00000028160 RLG00000033360 RLG00000033399 RLG00000033401 RLG00000033402 RLG00000033403 RLG00000033404 RLG00000033405 RLG00000033407 RLG00000033408 RLG00000033411 RLG00000033414 RLG00000033470 RLG00000033769 RLG00000033772 RLG00000033997
rosa_multiflora Rmu_co8044118.1_g000001 Rmu_co8077552.1_g000001 Rmu_co8082100.1_g000001 Rmu_co8171646.1_g000001 Rmu_co8225604.1_g000001 Rmu_co8285705.1_g000001 Rmu_co8296369.1_g000001 Rmu_co8319685.1_g000001 Rmu_co8326977.1_g000001 Rmu_co8421957.1_g000001 Rmu_co8457997.1_g000001 Rmu_co8464379.1_g000001 Rmu_co8466539.1_g000001 Rmu_sc0000055.1_g000016 Rmu_sc0000064.1_g000032 Rmu_sc0000316.1_g000004 Rmu_sc0000316.1_g000010 Rmu_sc0000316.1_g000011 Rmu_sc0000394.1_g000016 Rmu_sc0001017.1_g000022 Rmu_sc0001484.1_g000003 Rmu_sc0002530.1_g000028 Rmu_sc0002530.1_g000031 Rmu_sc0002530.1_g000035 Rmu_sc0002587.1_g000043 Rmu_sc0002719.1_g000003 Rmu_sc0002719.1_g000005 Rmu_sc0002964.1_g000011 Rmu_sc0003031.1_g000001 Rmu_sc0003031.1_g000014 Rmu_sc0003031.1_g000027 Rmu_sc0003031.1_g000053 Rmu_sc0003552.1_g000003 Rmu_sc0003656.1_g000001 Rmu_sc0003916.1_g000001 Rmu_sc0003916.1_g000003 Rmu_sc0004100.1_g000001 Rmu_sc0004129.1_g000008 Rmu_sc0004365.1_g000001 Rmu_sc0004365.1_g000002 Rmu_sc0004542.1_g000017 Rmu_sc0004792.1_g000029 Rmu_sc0004792.1_g000032 Rmu_sc0004792.1_g000034 Rmu_sc0004792.1_g000035 Rmu_sc0004927.1_g000003 Rmu_sc0004927.1_g000005 Rmu_sc0004927.1_g000013 Rmu_sc0004927.1_g000023 Rmu_sc0005002.1_g000009 Rmu_sc0005002.1_g000028 Rmu_sc0005278.1_g000024 Rmu_sc0005278.1_g000025 Rmu_sc0005375.1_g000022 Rmu_sc0005728.1_g000005 Rmu_sc0005728.1_g000007 Rmu_sc0005770.1_g000017 Rmu_sc0005808.1_g000002 Rmu_sc0005808.1_g000004 Rmu_sc0006798.1_g000002 Rmu_sc0006798.1_g000003 Rmu_sc0006798.1_g000006 Rmu_sc0006798.1_g000007 Rmu_sc0006798.1_g000011 Rmu_sc0007406.1_g000014 Rmu_sc0007406.1_g000025 Rmu_sc0007965.1_g000011 Rmu_sc0009840.1_g000001 Rmu_sc0011812.1_g000005 Rmu_sc0015491.1_g000002 Rmu_sc0019008.1_g000001 Rmu_sc0019103.1_g000001 Rmu_sc0020236.1_g000002 Rmu_sc0021706.1_g000002 Rmu_sc0022958.1_g000008 Rmu_sc0026238.1_g000001 Rmu_sc0032550.1_g000001 Rmu_sc0034983.1_g000001 Rmu_sc0039890.1_g000002 Rmu_sc0041272.1_g000001 Rmu_sc0041373.1_g000001 Rmu_ssc0000100.1_g000012 Rmu_ssc0000100.1_g000017 Rmu_ssc0000100.1_g000031 Rmu_ssc0000100.1_g000033 Rmu_ssc0000386.1_g000042
rosa_roxburghii Rroxscaffold_1G00039940 Rroxscaffold_1G00039970 Rroxscaffold_1G00039980 Rroxscaffold_1G00043650 Rroxscaffold_1G00043700 Rroxscaffold_1G00047420 Rroxscaffold_1G00047430 Rroxscaffold_1G00047450 Rroxscaffold_1G00047470 Rroxscaffold_1G00047480 Rroxscaffold_1G00047500 Rroxscaffold_1G00047510 Rroxscaffold_1G00047520 Rroxscaffold_1G00047540 Rroxscaffold_1G00047570 Rroxscaffold_1G00047690 Rroxscaffold_1G00047720 Rroxscaffold_1G00047730 Rroxscaffold_1G00047740 Rroxscaffold_1G00047880 Rroxscaffold_1G00047900 Rroxscaffold_1G00047910 Rroxscaffold_1G00047920 Rroxscaffold_1G00047940 Rroxscaffold_1G00047950 Rroxscaffold_1G00047970 Rroxscaffold_1G00047980 Rroxscaffold_1G00048000 Rroxscaffold_2G00132060 Rroxscaffold_2G00132100 Rroxscaffold_2G00132110 Rroxscaffold_2G00133580 Rroxscaffold_2G00133630 Rroxscaffold_2G00133640 Rroxscaffold_2G00135480 Rroxscaffold_2G00135490 Rroxscaffold_2G00135530 Rroxscaffold_2G00135600 Rroxscaffold_2G00135630 Rroxscaffold_4G00291170 Rroxscaffold_4G00296260 Rroxscaffold_4G00296270 Rroxscaffold_4G00298840 Rroxscaffold_4G00298890 Rroxscaffold_4G00298900 Rroxscaffold_4G00298930 Rroxscaffold_4G00298960 Rroxscaffold_4G00299220 Rroxscaffold_5G00344530 Rroxscaffold_5G00353770 Rroxscaffold_5G00358640 Rroxscaffold_7G00202240 Rroxscaffold_7G00209000
rosa_rugosa Rorug01G0218600 Rorug01G0251800 Rorug01G0255100 Rorug01G0255200 Rorug01G0255500 Rorug01G0255700 Rorug01G0256400 Rorug01G0276200 Rorug01G0322400 Rorug02G0150200 Rorug02G0150300 Rorug02G0150400 Rorug02G0150700 Rorug02G0150800 Rorug02G0150900 Rorug02G0151000 Rorug02G0151100 Rorug02G0166000 Rorug02G0166100.1 Rorug02G0176300 Rorug02G0176400 Rorug02G0176700 Rorug03G0192200 Rorug03G0193100 Rorug04G0017700 Rorug04G0331400 Rorug05G0129400 Rorug05G0131900 Rorug05G0132200 Rorug05G0132300 Rorug05G0132300 Rorug05G0132400 Rorug05G0132500 Rorug05G0132600 Rorug05G0132700 Rorug05G0132800 Rorug05G0132900 Rorug05G0164000 Rorug05G0164000 Rorug05G0186700 Rorug05G0187000 Rorug05G0323000 Rorug05G0323000 Rorug05G0567400 Rorug07G0136000 Rorug07G0159500
rosa_samantha Rh1CG249900 Rh1CG253000 Rh1DG261400 Rh1DG264400 Rh1DG264800 Rh1DG264900 Rh1DG265600 Rh2AG218700 Rh2AG228900 Rh2AG229000 Rh2BG227800 Rh2BG241900 Rh2BG297700 Rh2DG224600 Rh2DG225000 Rh2DG236900 Rh3AG243400 Rh3CG273500 Rh4DG088000 Rh5CG246800 Rh5CG247800 Rh5CG252000 Rh5CG252100 Rh5CG252200 Rh5CG252500 Rh5CG252600 Rh5CG252800 Rh5CG253100 Rh5CG253200 Rh5CG253300 Rh5CG253900 Rh5CG254100 Rh5CG288700 Rh5CG288800 Rh5CG309700 Rh5CG309800 Rh5DG415100 Rh6BG078900 Rh6BG142900 Rh6CG073600 Rh6CG139500 Rh7CG210700
rosa_wichuraiana Rw0G015410 Rw1G023790 Rw1G023810 Rw1G023830 Rw1G023890 Rw1G023960 Rw1G024030 Rw1G024060 Rw1G024080 Rw1G024100 Rw2G015830 Rw2G015870 Rw2G015890 Rw2G016830 Rw2G016870 Rw2G016890 Rw2G017700 Rw2G017710 Rw2G017730 Rw3G021740 Rw3G026100 Rw4G007870 Rw5G020370 Rw5G020560 Rw5G020590 Rw5G020610 Rw5G020620 Rw5G020640 Rw5G020660 Rw5G023440 Rw5G023480 Rw5G025580 Rw5G025610 Rw5G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 195, 1767
AccB1I GGYRCC 1 cut(s) 1328
AccBSI CCGCTC 1 cut(s) 769
AccI GTMKAC 2 cut(s) 138, 303
AccII CGCG 1 cut(s) 1218
AccIII TCCGGA 1 cut(s) 1091
AciI CCGC 4 cut(s) 374, 769, 1216, 1819
AclWI GGATC 7 cut(s) 485, 498, 521, 1083, 1096, 1508, 1521
AcsI RAATTY 3 cut(s) 650, 758, 791
AcuI CTGAAG 6 cut(s) 82, 262, 310, 519, 1456, 1850
AfaI GTAC 6 cut(s) 256, 283, 424, 1361, 1813, 1920
AfeI AGCGCT 1 cut(s) 607
AfiI CCNNNNNNNGG 6 cut(s) 509, 1347, 1348, 1432, 1524, 1844
AflII CTTAAG 1 cut(s) 52
AflIII ACRYGT 1 cut(s) 1611
AgsI TTSAA 7 cut(s) 115, 409, 750, 796, 801, 1346, 1874
AhdI GACNNNNNGTC 1 cut(s) 661
AjnI CCWGG 5 cut(s) 21, 152, 496, 966, 1233
AloI GAACNNNNNNTCC 2 cut(s) 1505, 1537
AluBI AGCT 7 cut(s) 178, 580, 1370, 1483, 1507, 1742, 1870
AluI AGCT 7 cut(s) 178, 580, 1370, 1483, 1507, 1742, 1870
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 2 cut(s) 1144, 1387
AlwI GGATC 7 cut(s) 485, 498, 521, 1083, 1096, 1508, 1521
AlwNI CAGNNNCTG 1 cut(s) 1142
Ama87I CYCGRG 1 cut(s) 571
Aor13HI TCCGGA 1 cut(s) 1091
Aor51HI AGCGCT 1 cut(s) 607
AoxI GGCC 4 cut(s) 155, 263, 1078, 1566
ApeKI GCWGC 4 cut(s) 119, 1043, 1739, 1949
ApoI RAATTY 3 cut(s) 650, 758, 791
AseI ATTAAT 1 cut(s) 1194
Asp700I GAANNNNTTC 2 cut(s) 866, 1187
AspLEI GCGC 1 cut(s) 608
AspS9I GGNCC 3 cut(s) 263, 500, 1567
AsuC2I CCSGG 1 cut(s) 1519
AsuHPI GGTGA 4 cut(s) 158, 1280, 1499, 1808
AvaI CYCGRG 1 cut(s) 571
AvaII GGWCC 1 cut(s) 500
BamHI GGATCC 3 cut(s) 490, 1088, 1513
BanI GGYRCC 1 cut(s) 1328
BanII GRGCYC 1 cut(s) 180
BarI GAAGNNNNNNTAC 2 cut(s) 1866, 1898
BauI CACGAG 1 cut(s) 1508
BbsI GAAGAC 4 cut(s) 316, 869, 1180, 1664
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 4 cut(s) 106, 1030, 1751, 1936
BccI CCATC 3 cut(s) 326, 1233, 1245
BciT130I CCWGG 5 cut(s) 23, 154, 498, 968, 1235
BciVI GTATCC 1 cut(s) 1553
BclI TGATCA 1 cut(s) 1909
BcnI CCSGG 1 cut(s) 1519
BcoDI GTCTC 2 cut(s) 1144, 1387
BfaI CTAG 4 cut(s) 398, 1076, 1596, 1980
BfoI RGCGCY 1 cut(s) 609
BfrI CTTAAG 1 cut(s) 52
BfuI GTATCC 1 cut(s) 1553
BglII AGATCT 2 cut(s) 991, 1120
BisI GCNGC 6 cut(s) 120, 770, 1044, 1216, 1740, 1950
BlpI GCTNAGC 1 cut(s) 1503
BlsI GCNGC 6 cut(s) 121, 771, 1045, 1217, 1741, 1951
BmcAI AGTACT 3 cut(s) 256, 283, 424
Bme1390I CCNGG 6 cut(s) 23, 154, 498, 968, 1235, 1519
Bme18I GGWCC 1 cut(s) 500
BmeRI GACNNNNNGTC 1 cut(s) 661
BmeT110I CYCGRG 1 cut(s) 571
BmgT120I GGNCC 3 cut(s) 263, 500, 1567
BmiI GGNNCC 5 cut(s) 492, 1090, 1330, 1515, 1569
BmrFI CCNGG 6 cut(s) 23, 154, 498, 968, 1235, 1519
BmrI ACTGGG 1 cut(s) 270
BmsI GCATC 5 cut(s) 139, 244, 573, 897, 1726
BmuI ACTGGG 1 cut(s) 270
BpiI GAAGAC 4 cut(s) 316, 869, 1180, 1664
Bpu1102I GCTNAGC 1 cut(s) 1503
BpuEI CTTGAG 1 cut(s) 1016
BpuMI CCSGG 1 cut(s) 1519
BsaBI GATNNNNATC 1 cut(s) 518
BsaJI CCNNGG 7 cut(s) 142, 357, 966, 1081, 1517, 1635, 1895
BsaWI WCCGGW 1 cut(s) 1091
BsaXI ACNNNNNCTCC 2 cut(s) 947, 977
Bsc4I CCNNNNNNNGG 6 cut(s) 509, 1347, 1348, 1432, 1524, 1844
Bse1I ACTGG 3 cut(s) 265, 420, 1708
Bse3DI GCAATG 3 cut(s) 882, 1424, 1497
Bse8I GATNNNNATC 1 cut(s) 518
BseAI TCCGGA 1 cut(s) 1091
BseBI CCWGG 5 cut(s) 23, 154, 498, 968, 1235
BseDI CCNNGG 7 cut(s) 142, 357, 966, 1081, 1517, 1635, 1895
BseGI GGATG 3 cut(s) 85, 976, 1256
BseJI GATNNNNATC 1 cut(s) 518
BseLI CCNNNNNNNGG 6 cut(s) 509, 1347, 1348, 1432, 1524, 1844
BseMI GCAATG 3 cut(s) 882, 1424, 1497
BseMII CTCAG 6 cut(s) 636, 756, 1398, 1544, 1958, 1973
BseNI ACTGG 3 cut(s) 265, 420, 1708
BseRI GAGGAG 3 cut(s) 964, 1421, 1554
BseXI GCAGC 4 cut(s) 106, 1030, 1751, 1936
BsgI GTGCAG 1 cut(s) 1259
Bsh1236I CGCG 1 cut(s) 1218
BshFI GGCC 4 cut(s) 157, 265, 1080, 1568
BshNI GGYRCC 1 cut(s) 1328
BsiHKAI GWGCWC 1 cut(s) 180
BsiHKCI CYCGRG 1 cut(s) 571
BsiSI CCGG 2 cut(s) 1092, 1519
BslFI GGGAC 2 cut(s) 1564, 1913
BslI CCNNNNNNNGG 6 cut(s) 509, 1347, 1348, 1432, 1524, 1844
BsmAI GTCTC 2 cut(s) 1144, 1387
BsmFI GGGAC 2 cut(s) 1564, 1913
BsmI GAATGC 2 cut(s) 679, 1277
BsnI GGCC 4 cut(s) 157, 265, 1080, 1568
BsoBI CYCGRG 1 cut(s) 571
Bsp1286I GDGCHC 1 cut(s) 180
Bsp13I TCCGGA 1 cut(s) 1091
Bsp143I GATC 7 cut(s) 490, 513, 991, 1088, 1120, 1513, 1909
Bsp1720I GCTNAGC 1 cut(s) 1503
BspACI CCGC 4 cut(s) 374, 769, 1216, 1819
BspANI GGCC 4 cut(s) 157, 265, 1080, 1568
BspCNI CTCAG 6 cut(s) 637, 757, 1397, 1543, 1957, 1972
BspEI TCCGGA 1 cut(s) 1091
BspFNI CGCG 1 cut(s) 1218
BspHI TCATGA 1 cut(s) 1258
BspLI GGNNCC 5 cut(s) 492, 1090, 1330, 1515, 1569
BspPI GGATC 7 cut(s) 485, 498, 521, 1083, 1096, 1508, 1521
BspT107I GGYRCC 1 cut(s) 1328
BspTI CTTAAG 1 cut(s) 52
BsrBI CCGCTC 1 cut(s) 769
BsrDI GCAATG 3 cut(s) 882, 1424, 1497
BsrI ACTGG 3 cut(s) 265, 420, 1708
BssECI CCNNGG 7 cut(s) 142, 357, 966, 1081, 1517, 1635, 1895
BssMI GATC 7 cut(s) 490, 513, 991, 1088, 1120, 1513, 1909
BssSI CACGAG 1 cut(s) 1508
BssT1I CCWWGG 4 cut(s) 142, 1081, 1635, 1895
Bst2BI CACGAG 1 cut(s) 1508
Bst2UI CCWGG 5 cut(s) 23, 154, 498, 968, 1235
Bst4CI ACNGT 7 cut(s) 203, 248, 254, 628, 982, 1138, 1993
Bst6I CTCTTC 3 cut(s) 410, 941, 1142
BstAFI CTTAAG 1 cut(s) 52
BstAPI GCANNNNNTGC 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 1063
BstDEI CTNAG 9 cut(s) 645, 765, 1378, 1384, 1479, 1503, 1530, 1944, 1959
BstDSI CCRYGG 1 cut(s) 357
BstF5I GGATG 3 cut(s) 85, 976, 1256
BstFNI CGCG 1 cut(s) 1218
BstH2I RGCGCY 1 cut(s) 609
BstHHI GCGC 1 cut(s) 608
BstKTI GATC 7 cut(s) 493, 516, 994, 1091, 1123, 1516, 1912
BstMAI GTCTC 2 cut(s) 1144, 1387
BstMBI GATC 7 cut(s) 490, 513, 991, 1088, 1120, 1513, 1909
BstMWI GCNNNNNNNGC 2 cut(s) 45, 221
BstNI CCWGG 5 cut(s) 23, 154, 498, 968, 1235
BstNSI RCATGY 5 cut(s) 776, 1297, 1615, 1650, 1906
BstSCI CCNGG 6 cut(s) 21, 152, 496, 966, 1233, 1517
BstUI CGCG 1 cut(s) 1218
BstV1I GCAGC 4 cut(s) 106, 1030, 1751, 1936
BstV2I GAAGAC 4 cut(s) 316, 869, 1180, 1664
BstX2I RGATCY 5 cut(s) 490, 991, 1088, 1120, 1513
BstXI CCANNNNNNTGG 1 cut(s) 1325
BstYI RGATCY 5 cut(s) 490, 991, 1088, 1120, 1513
BsuI GTATCC 1 cut(s) 1553
BsuRI GGCC 4 cut(s) 157, 265, 1080, 1568
BtgI CCRYGG 1 cut(s) 357
BtsCI GGATG 3 cut(s) 85, 976, 1256
BtsIMutI CAGTG 4 cut(s) 306, 334, 642, 978
Cac8I GCNNGC 1 cut(s) 1063
CaiI CAGNNNCTG 1 cut(s) 1142
CciI TCATGA 1 cut(s) 1258
CfoI GCGC 1 cut(s) 608
Cfr13I GGNCC 3 cut(s) 263, 500, 1567
CseI GACGC 1 cut(s) 651
CsiI ACCWGGT 1 cut(s) 1233
Csp6I GTAC 6 cut(s) 255, 282, 423, 1360, 1812, 1919
CviQI GTAC 6 cut(s) 255, 282, 423, 1360, 1812, 1919
DdeI CTNAG 9 cut(s) 645, 765, 1378, 1384, 1479, 1503, 1530, 1944, 1959
DpnI GATC 7 cut(s) 492, 515, 993, 1090, 1122, 1515, 1911
DpnII GATC 7 cut(s) 490, 513, 991, 1088, 1120, 1513, 1909
DriI GACNNNNNGTC 1 cut(s) 661
Eam1104I CTCTTC 3 cut(s) 410, 941, 1142
Eam1105I GACNNNNNGTC 1 cut(s) 661
EarI CTCTTC 3 cut(s) 410, 941, 1142
EciI GGCGGA 1 cut(s) 363
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 4 cut(s) 142, 1081, 1635, 1895
Eco24I GRGCYC 1 cut(s) 180
Eco32I GATATC 2 cut(s) 1438, 1965
Eco47I GGWCC 1 cut(s) 500
Eco47III AGCGCT 1 cut(s) 607
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 6 cut(s) 82, 262, 310, 519, 1456, 1850
Eco88I CYCGRG 1 cut(s) 571
EcoICRI GAGCTC 1 cut(s) 178
EcoO109I RGGNCCY 1 cut(s) 500
EcoRI GAATTC 2 cut(s) 758, 791
EcoRII CCWGG 5 cut(s) 21, 152, 496, 966, 1233
EcoRV GATATC 2 cut(s) 1438, 1965
EcoT14I CCWWGG 4 cut(s) 142, 1081, 1635, 1895
EcoT22I ATGCAT 3 cut(s) 592, 1291, 1908
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 4 cut(s) 142, 1081, 1635, 1895
FalI AAGNNNNNCTT 4 cut(s) 854, 886, 1139, 1171
FaqI GGGAC 2 cut(s) 1564, 1913
FbaI TGATCA 1 cut(s) 1909
FblI GTMKAC 2 cut(s) 138, 303
Fnu4HI GCNGC 6 cut(s) 120, 770, 1044, 1216, 1740, 1950
FokI GGATG 3 cut(s) 72, 983, 1263
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 6 cut(s) 120, 770, 1044, 1216, 1740, 1950
FspBI CTAG 4 cut(s) 398, 1076, 1596, 1980
GlaI GCGC 1 cut(s) 607
GluI GCNGC 6 cut(s) 120, 770, 1044, 1216, 1740, 1950
HaeII RGCGCY 1 cut(s) 609
HaeIII GGCC 4 cut(s) 157, 265, 1080, 1568
HapII CCGG 2 cut(s) 1092, 1519
HgaI GACGC 1 cut(s) 651
HhaI GCGC 1 cut(s) 608
Hin6I GCGC 1 cut(s) 606
HinP1I GCGC 1 cut(s) 606
HincII GTYRAC 2 cut(s) 304, 700
HindII GTYRAC 2 cut(s) 304, 700
HindIII AAGCTT 2 cut(s) 578, 1481
HinfI GANTC 7 cut(s) 402, 1110, 1152, 1163, 1206, 1528, 1604
HpaII CCGG 2 cut(s) 1092, 1519
HphI GGTGA 4 cut(s) 158, 1280, 1499, 1808
Hpy166II GTNNAC 7 cut(s) 139, 304, 544, 642, 700, 978, 1812
Hpy188I TCNGA 7 cut(s) 166, 766, 906, 1205, 1533, 1609, 1962
Hpy188III TCNNGA 7 cut(s) 719, 871, 995, 1092, 1259, 1525, 1733
Hpy8I GTNNAC 7 cut(s) 139, 304, 544, 642, 700, 978, 1812
Hpy99I CGWCG 2 cut(s) 166, 923
HpyCH4III ACNGT 7 cut(s) 203, 248, 254, 628, 982, 1138, 1993
HpyCH4IV ACGT 2 cut(s) 638, 1452
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 221
HpyF3I CTNAG 9 cut(s) 645, 765, 1378, 1384, 1479, 1503, 1530, 1944, 1959
HpySE526I ACGT 2 cut(s) 638, 1452
HspAI GCGC 1 cut(s) 606
Kpn2I TCCGGA 1 cut(s) 1091
Ksp22I TGATCA 1 cut(s) 1909
Kzo9I GATC 7 cut(s) 490, 513, 991, 1088, 1120, 1513, 1909
Lsp1109I GCAGC 4 cut(s) 106, 1030, 1751, 1936
LweI GCATC 5 cut(s) 139, 244, 573, 897, 1726
MabI ACCWGGT 1 cut(s) 1233
MaeI CTAG 4 cut(s) 398, 1076, 1596, 1980
MaeII ACGT 2 cut(s) 638, 1452
MaeIII GTNAC 6 cut(s) 248, 727, 1003, 1025, 1710, 1987
MalI GATC 7 cut(s) 492, 515, 993, 1090, 1122, 1515, 1911
MbiI CCGCTC 1 cut(s) 769
MboI GATC 7 cut(s) 490, 513, 991, 1088, 1120, 1513, 1909
MflI RGATCY 5 cut(s) 490, 991, 1088, 1120, 1513
MhlI GDGCHC 1 cut(s) 180
MlyI GAGTC 4 cut(s) 396, 1104, 1146, 1522
MmeI TCCRAC 4 cut(s) 144, 187, 1440, 1780
MnlI CCTC 9 cut(s) 84, 513, 942, 1079, 1121, 1399, 1402, 1532, 1966
Mph1103I ATGCAT 3 cut(s) 592, 1291, 1908
MroI TCCGGA 1 cut(s) 1091
MroXI GAANNNNTTC 2 cut(s) 866, 1187
MseI TTAA 5 cut(s) 53, 429, 1194, 1970, 2002
MslI CAYNNNNRTG 2 cut(s) 296, 905
MspA1I CMGCKG 1 cut(s) 1742
MspCI CTTAAG 1 cut(s) 52
MspI CCGG 2 cut(s) 1092, 1519
MspR9I CCNGG 6 cut(s) 23, 154, 498, 968, 1235, 1519
Mva1269I GAATGC 2 cut(s) 679, 1277
MvaI CCWGG 5 cut(s) 23, 154, 498, 968, 1235
MvnI CGCG 1 cut(s) 1218
MwoI GCNNNNNNNGC 2 cut(s) 45, 221
NciI CCSGG 1 cut(s) 1519
NdeII GATC 7 cut(s) 490, 513, 991, 1088, 1120, 1513, 1909
NlaIV GGNNCC 5 cut(s) 492, 1090, 1330, 1515, 1569
NmeAIII GCCGAG 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 1003
NsiI ATGCAT 3 cut(s) 592, 1291, 1908
NspI RCATGY 5 cut(s) 776, 1297, 1615, 1650, 1906
PagI TCATGA 1 cut(s) 1258
PciI ACATGT 1 cut(s) 1611
PctI GAATGC 2 cut(s) 679, 1277
PdmI GAANNNNTTC 2 cut(s) 866, 1187
PfeI GAWTC 3 cut(s) 1163, 1206, 1604
PkrI GCNGC 6 cut(s) 121, 771, 1045, 1217, 1741, 1951
PleI GAGTC 4 cut(s) 396, 1104, 1146, 1522
PpsI GAGTC 4 cut(s) 396, 1104, 1146, 1522
PpuMI RGGWCCY 1 cut(s) 500
PscI ACATGT 1 cut(s) 1611
PshBI ATTAAT 1 cut(s) 1194
PsiI TTATAA 2 cut(s) 195, 1767
Psp124BI GAGCTC 1 cut(s) 180
Psp5II RGGWCCY 1 cut(s) 500
Psp6I CCWGG 5 cut(s) 21, 152, 496, 966, 1233
PspGI CCWGG 5 cut(s) 21, 152, 496, 966, 1233
PspN4I GGNNCC 5 cut(s) 492, 1090, 1330, 1515, 1569
PspPI GGNCC 3 cut(s) 263, 500, 1567
PspPPI RGGWCCY 1 cut(s) 500
PsrI GAACNNNNNNTAC 4 cut(s) 1845, 1877, 1920, 1952
PstNI CAGNNNCTG 1 cut(s) 1142
PsuI RGATCY 5 cut(s) 490, 991, 1088, 1120, 1513
PvuII CAGCTG 1 cut(s) 1742
RsaI GTAC 6 cut(s) 256, 283, 424, 1361, 1813, 1920
RsaNI GTAC 6 cut(s) 255, 282, 423, 1360, 1812, 1919
RseI CAYNNNNRTG 2 cut(s) 296, 905
SacI GAGCTC 1 cut(s) 180
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 5 cut(s) 53, 429, 1194, 1970, 2002
SatI GCNGC 6 cut(s) 120, 770, 1044, 1216, 1740, 1950
Sau3AI GATC 7 cut(s) 490, 513, 991, 1088, 1120, 1513, 1909
Sau96I GGNCC 3 cut(s) 263, 500, 1567
ScaI AGTACT 3 cut(s) 256, 283, 424
SchI GAGTC 4 cut(s) 396, 1104, 1146, 1522
ScrFI CCNGG 6 cut(s) 23, 154, 498, 968, 1235, 1519
SduI GDGCHC 1 cut(s) 180
SexAI ACCWGGT 1 cut(s) 1233
SfaNI GCATC 5 cut(s) 139, 244, 573, 897, 1726
SinI GGWCC 1 cut(s) 500
SmiMI CAYNNNNRTG 2 cut(s) 296, 905
SmlI CTYRAG 2 cut(s) 52, 995
SmoI CTYRAG 2 cut(s) 52, 995
SsiI CCGC 4 cut(s) 374, 769, 1216, 1819
SspMI CTAG 4 cut(s) 398, 1076, 1596, 1980
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 6 cut(s) 21, 152, 496, 966, 1233, 1517
StyI CCWWGG 4 cut(s) 142, 1081, 1635, 1895
TaaI ACNGT 7 cut(s) 203, 248, 254, 628, 982, 1138, 1993
TaiI ACGT 2 cut(s) 641, 1455
TaqI TCGA 3 cut(s) 303, 476, 1228
TatI WGTACW 5 cut(s) 254, 281, 422, 1811, 1918
TauI GCSGC 2 cut(s) 772, 1218
TfiI GAWTC 3 cut(s) 1163, 1206, 1604
Tru1I TTAA 5 cut(s) 53, 429, 1194, 1970, 2002
Tru9I TTAA 5 cut(s) 53, 429, 1194, 1970, 2002
TscAI CASTG 4 cut(s) 313, 334, 649, 985
TseFI GTSAC 1 cut(s) 1003
TseI GCWGC 4 cut(s) 119, 1043, 1739, 1949
Tsp45I GTSAC 1 cut(s) 1003
TspGWI ACGGA 1 cut(s) 1064
TspRI CASTG 4 cut(s) 313, 334, 649, 985
Vha464I CTTAAG 1 cut(s) 52
VpaK11BI GGWCC 1 cut(s) 500
VspI ATTAAT 1 cut(s) 1194
XapI RAATTY 3 cut(s) 650, 758, 791
XceI RCATGY 5 cut(s) 776, 1297, 1615, 1650, 1906
XcmI CCANNNNNNNNNTGG 2 cut(s) 1456, 1695
XmiI GTMKAC 2 cut(s) 138, 303
XmnI GAANNNNTTC 2 cut(s) 866, 1187
XspI CTAG 4 cut(s) 398, 1076, 1596, 1980
ZrmI AGTACT 3 cut(s) 256, 283, 424
Zsp2I ATGCAT 3 cut(s) 592, 1291, 1908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.