Rmu_sc0005808.1_g000004

Lectin-domain containing receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005808.1
OG0000038
Physical Location & Seq
Forward (+)
15517 .. 19020
3504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005808.1_g000004.1.cds

Sequence Viewer

Length: 2817 bp
atgaaactaccacatataccagtccatatcctctttttccttttgtttcttccctatgctagctcaatttctttccaaataccccgatttgatgcgagtgcaaccaacattgtgtatgagggagatgcactgcctgctgtaggagttatcgaactgatcaacaaatataggtatatatgccgtgtcggcagggccacctacgctgagagaatcccaatttggaactctcgtacggggaaggtcactgacttcacaacccatttctcattcgtcatccaaagacaagaaagcgcagcttatggcagcggaattgcattctttcttgctccttttggatatcaaatccccccaaattcagctggtggaatgctaggcctactcaacaccacaaccagtgacttcgccggaaaccagattgttgtagttgagtttgacaccttcgtgaaccctgaatgggaccctccttatcagcatgtggggatcaacaaaaactcaatttcttctgttgcgagcacgccttggaatgttagcttacacgatggagacactactgatgtatggatcacctacagtgctacaacaaccacactcagtgtcgattggagctaccgaactacccctgcttctgcagaggagacaactagtctttcataccaaattgatctggcaaaagtcctgcctgagtgggtcacagttggattttcagctggtactggtggagacgctgggacacgaaatcagattgaatcgtgggaattcaattcgactttgaataggaagtatcccggtccaggtctcggaaagggtgcaaagaagatcttagtgataatagcagtactagtggcagtttcagtggtttctctgattgctgggatggttgcagcaaacattccgaggttgtacaggtggagatacaaaaaaggaatcgtgacagaaccaggagcagaggaagaaagattgacttcaatcaatcaagacagtagtgacagaagagccggaatgagaaggttcccttattcagaaatcgaaagagctacaaacaacttctccaaggaggtgggtgaaggagggtctagtacggtttacaggggtaaccttcctactgatgataccgctgtcgctgtgaagaaaatttcaagcaggtcagggcaggggagaaaggagtgtatgacggaagtgaagctcattagtagcttgagacacccaaatcttgtgcaactgaaaggatgggggcacgacaaagaggagaagacgttcctacttgtttacgagttcatgccaaagggaagccttgatgctcacctctttgggaaggggtgtgctttaacctgggatgatagatacaagatatgcggggggttggccactgcattgctctatcttcatgatccatatcttcatcaagggtggaagcaatgcgtggtgcaccgagacattaaatcaagcaacatcctattagactctagctttaatgtcaagctaggcgactttgggttagctcggcttatggattttgagctagatccagagacaactgggtgggctggaacaccaggttatgtggatccagaatatgtactcagcagaaaggctagtacagagtcggatgtttatagctttggggtcgttatcttggaaattgctactggagaaaggtcggtggactctaggggactggtagagagggtttgggacctttacgaacaaggtaagcttccttcagctgtggataagaggttgcaggagtatgataagaaacaagcagagagattgatgctggtaggactgtggtgtgctcaccctgttcgaaatgaaaggccctctataaggaaagcaattgagtatattcactttgatgctgatttgccatatcttcctaagaagatgcctgttcgagtgtatcagcaacctacaccgccgccctcggtcagctccaccgaagctttaagtacaacaagccttcaagatgatactactggcaaagtcggactgcttccggagcagaagatgacagctgccttgcgaatgcttgcttatggtgcaggggcaaatcaatgtgctaagtattgtcagatgatgatctccacttctgtcgcagcccttcagcactttacacgagaaattgttaatctttactcagcagaatacctccgcgctcctagtgttgccgacctcagacgacttcttgccaaaactgagaggagaggttttccaggaatgattgggagcatcgactgtatgcattggcaatggaagaattgtccgataggttgggctggagaatatagtggaaggaaacagatccccaccatcctggaagcagtcgcatcttacgacacctggatttggcactcattctttggaatgcccggggcatgcaacaacctcaacgtcttggcaaagtctccattgtttgatgagcttaccgccgacagcgatgataagttggattccgacgatgaagaggataacaatatgaggcccaggattgctgaggtatgggagagaccaaccggtagagactttgatcatgttggtagagatgctcatcatatgaacggattcatggaccgctaccaacaaattatatctgagcacagtcactccaaccttcaggaagacctcattcaacacttttgggaatttcaaggcaacatgtgtatctggatctgctatttgtgtgtggactccaccggtgaatggtggttgtggatagccaccggtgaatggtgtttgtgggaagtcaccggtgaatgttggttgtggaaaaccaccggggaaatgagattgtggataatacccaccggagaatggtag

Protein Analysis

938

Amino Acids

105.52

Weight (kDa)

5.78

Isoelectric Point (pI)

36.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10530 AT5G65600
fragaria_vesca FvH4_1g17770 FvH4_1g19171 FvH4_1g19180 FvH4_1g19922 FvH4_1g19923 FvH4_1g19940 FvH4_1g19950 FvH4_3g19030 FvH4_3g19040 FvH4_3g19350 FvH4_3g19361 FvH4_3g19370 FvH4_3g19372 FvH4_3g19390 FvH4_3g19390 FvH4_3g19400 FvH4_3g19400 FvH4_3g23100 FvH4_3g32500 FvH4_3g39140 FvH4_4g12891 FvH4_4g12900 FvH4_5g13890 FvH4_6g23490 FvH4_7g14930 FvH4_7g14950 FvH4_7g15082 FvH4_7g16980
malus_domestica MD01G1043400.v1.1 MD01G1043500.v1.1 MD03G1232800.v1.1 MD03G1232900.v1.1 MD03G1233000.v1.1 MD03G1233100.v1.1 MD03G1233200.v1.1 MD03G1233300.v1.1 MD03G1233600.v1.1 MD03G1233700.v1.1 MD03G1233900.v1.1 MD03G1234100.v1.1 MD03G1234300.v1.1 MD03G1234400.v1.1 MD03G1234500.v1.1 MD03G1234600.v1.1 MD08G1053200.v1.1 MD08G1053400.v1.1 MD08G1053500.v1.1 MD08G1053600.v1.1 MD08G1053800.v1.1 MD08G1053900.v1.1 MD08G1054000.v1.1 MD08G1054100.v1.1 MD08G1054200.v1.1 MD08G1054400.v1.1 MD08G1054600.v1.1 MD09G1175200.v1.1 MD09G1289800.v1.1 MD09G1289900.v1.1 MD11G1253600.v1.1 MD11G1254300.v1.1 MD11G1254500.v1.1 MD11G1254900.v1.1 MD11G1255100.v1.1 MD15G1042500.v1.1 MD15G1053100.v1.1 MD15G1053200.v1.1 MD15G1307500.v1.1
prunus_persica Prupe.1G157800_v2.0.a1 Prupe.1G395700_v2.0.a1 Prupe.4G174600_v2.0.a1 Prupe.4G174800_v2.0.a1 Prupe.4G174900_v2.0.a1 Prupe.4G175000_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175300_v2.0.a1 Prupe.4G175400_v2.0.a1 Prupe.4G175500_v2.0.a1 Prupe.4G175600_v2.0.a1 Prupe.4G175700_v2.0.a1 Prupe.4G241200_v2.0.a1 Prupe.6G208500_v2.0.a1 Prupe.6G208700_v2.0.a1 Prupe.6G208800_v2.0.a1 Prupe.8G117500_v2.0.a1 Prupe.I004200_v2.0.a1 Prupe.I004300_v2.0.a1
pyrus_communis pycom03g18010 pycom03g18050 pycom03g18070 pycom03g18100 pycom08g04440 pycom09g19760 pycom11g22500 pycom11g22510 pycom11g22520
rosa_chinensis RchiOBHm_Chr1g0318811 RchiOBHm_Chr1g0329471 RchiOBHm_Chr1g0340841 RchiOBHm_Chr1g0340931 RchiOBHm_Chr1g0356861 RchiOBHm_Chr1g0357251 RchiOBHm_Chr1g0357261 RchiOBHm_Chr1g0357321 RchiOBHm_Chr1g0360231 RchiOBHm_Chr1g0365521 RchiOBHm_Chr1g0365571 RchiOBHm_Chr1g0365581 RchiOBHm_Chr2g0108101 RchiOBHm_Chr2g0108131 RchiOBHm_Chr2g0108161 RchiOBHm_Chr2g0108191 RchiOBHm_Chr2g0108201 RchiOBHm_Chr2g0110211 RchiOBHm_Chr2g0110221 RchiOBHm_Chr2g0110261 RchiOBHm_Chr2g0110301 RchiOBHm_Chr2g0111801 RchiOBHm_Chr2g0111821 RchiOBHm_Chr2g0128081 RchiOBHm_Chr2g0151141 RchiOBHm_Chr3g0469441 RchiOBHm_Chr3g0481491 RchiOBHm_Chr4g0399611 RchiOBHm_Chr4g0414891 RchiOBHm_Chr5g0031941 RchiOBHm_Chr5g0032011 RchiOBHm_Chr5g0032051 RchiOBHm_Chr5g0032101 RchiOBHm_Chr5g0032421 RchiOBHm_Chr5g0032461 RchiOBHm_Chr5g0032481 RchiOBHm_Chr5g0032541 RchiOBHm_Chr5g0032571 RchiOBHm_Chr5g0032591 RchiOBHm_Chr5g0032631 RchiOBHm_Chr5g0037251 RchiOBHm_Chr5g0037271 RchiOBHm_Chr5g0037281 RchiOBHm_Chr5g0037291 RchiOBHm_Chr5g0040701 RchiOBHm_Chr5g0040731 RchiOBHm_Chr5g0059491 RchiOBHm_Chr6g0257841 RchiOBHm_Chr6g0274701 RchiOBHm_Chr7g0212711
rosa_laevigata RLG00000002585 RLG00000002586 RLG00000008111 RLG00000009258 RLG00000012123 RLG00000014148 RLG00000014734 RLG00000017640 RLG00000017642 RLG00000017645 RLG00000017646 RLG00000017795 RLG00000017796 RLG00000017925 RLG00000017926 RLG00000020068 RLG00000023393 RLG00000024495 RLG00000028027 RLG00000028033 RLG00000028034 RLG00000028035 RLG00000028037 RLG00000028040 RLG00000028041 RLG00000028072 RLG00000028159 RLG00000028160 RLG00000033360 RLG00000033399 RLG00000033401 RLG00000033402 RLG00000033403 RLG00000033404 RLG00000033405 RLG00000033407 RLG00000033408 RLG00000033411 RLG00000033414 RLG00000033470 RLG00000033769 RLG00000033772 RLG00000033997
rosa_multiflora Rmu_co8044118.1_g000001 Rmu_co8077552.1_g000001 Rmu_co8082100.1_g000001 Rmu_co8171646.1_g000001 Rmu_co8225604.1_g000001 Rmu_co8285705.1_g000001 Rmu_co8296369.1_g000001 Rmu_co8319685.1_g000001 Rmu_co8326977.1_g000001 Rmu_co8421957.1_g000001 Rmu_co8457997.1_g000001 Rmu_co8464379.1_g000001 Rmu_co8466539.1_g000001 Rmu_sc0000055.1_g000016 Rmu_sc0000064.1_g000032 Rmu_sc0000316.1_g000004 Rmu_sc0000316.1_g000010 Rmu_sc0000316.1_g000011 Rmu_sc0000394.1_g000016 Rmu_sc0001017.1_g000022 Rmu_sc0001484.1_g000003 Rmu_sc0002530.1_g000028 Rmu_sc0002530.1_g000031 Rmu_sc0002530.1_g000035 Rmu_sc0002587.1_g000043 Rmu_sc0002719.1_g000003 Rmu_sc0002719.1_g000005 Rmu_sc0002964.1_g000011 Rmu_sc0003031.1_g000001 Rmu_sc0003031.1_g000014 Rmu_sc0003031.1_g000027 Rmu_sc0003031.1_g000053 Rmu_sc0003552.1_g000003 Rmu_sc0003656.1_g000001 Rmu_sc0003916.1_g000001 Rmu_sc0003916.1_g000003 Rmu_sc0004100.1_g000001 Rmu_sc0004129.1_g000008 Rmu_sc0004365.1_g000001 Rmu_sc0004365.1_g000002 Rmu_sc0004542.1_g000017 Rmu_sc0004792.1_g000029 Rmu_sc0004792.1_g000032 Rmu_sc0004792.1_g000034 Rmu_sc0004792.1_g000035 Rmu_sc0004927.1_g000003 Rmu_sc0004927.1_g000005 Rmu_sc0004927.1_g000013 Rmu_sc0004927.1_g000023 Rmu_sc0005002.1_g000009 Rmu_sc0005002.1_g000028 Rmu_sc0005278.1_g000024 Rmu_sc0005278.1_g000025 Rmu_sc0005375.1_g000022 Rmu_sc0005728.1_g000005 Rmu_sc0005728.1_g000007 Rmu_sc0005770.1_g000017 Rmu_sc0005808.1_g000002 Rmu_sc0005808.1_g000004 Rmu_sc0006798.1_g000002 Rmu_sc0006798.1_g000003 Rmu_sc0006798.1_g000006 Rmu_sc0006798.1_g000007 Rmu_sc0006798.1_g000011 Rmu_sc0007406.1_g000014 Rmu_sc0007406.1_g000025 Rmu_sc0007965.1_g000011 Rmu_sc0009840.1_g000001 Rmu_sc0011812.1_g000005 Rmu_sc0015491.1_g000002 Rmu_sc0019008.1_g000001 Rmu_sc0019103.1_g000001 Rmu_sc0020236.1_g000002 Rmu_sc0021706.1_g000002 Rmu_sc0022958.1_g000008 Rmu_sc0026238.1_g000001 Rmu_sc0032550.1_g000001 Rmu_sc0034983.1_g000001 Rmu_sc0039890.1_g000002 Rmu_sc0041272.1_g000001 Rmu_sc0041373.1_g000001 Rmu_ssc0000100.1_g000012 Rmu_ssc0000100.1_g000017 Rmu_ssc0000100.1_g000031 Rmu_ssc0000100.1_g000033 Rmu_ssc0000386.1_g000042
rosa_roxburghii Rroxscaffold_1G00039940 Rroxscaffold_1G00039970 Rroxscaffold_1G00039980 Rroxscaffold_1G00043650 Rroxscaffold_1G00043700 Rroxscaffold_1G00047420 Rroxscaffold_1G00047430 Rroxscaffold_1G00047450 Rroxscaffold_1G00047470 Rroxscaffold_1G00047480 Rroxscaffold_1G00047500 Rroxscaffold_1G00047510 Rroxscaffold_1G00047520 Rroxscaffold_1G00047540 Rroxscaffold_1G00047570 Rroxscaffold_1G00047690 Rroxscaffold_1G00047720 Rroxscaffold_1G00047730 Rroxscaffold_1G00047740 Rroxscaffold_1G00047880 Rroxscaffold_1G00047900 Rroxscaffold_1G00047910 Rroxscaffold_1G00047920 Rroxscaffold_1G00047940 Rroxscaffold_1G00047950 Rroxscaffold_1G00047970 Rroxscaffold_1G00047980 Rroxscaffold_1G00048000 Rroxscaffold_2G00132060 Rroxscaffold_2G00132100 Rroxscaffold_2G00132110 Rroxscaffold_2G00133580 Rroxscaffold_2G00133630 Rroxscaffold_2G00133640 Rroxscaffold_2G00135480 Rroxscaffold_2G00135490 Rroxscaffold_2G00135530 Rroxscaffold_2G00135600 Rroxscaffold_2G00135630 Rroxscaffold_4G00291170 Rroxscaffold_4G00296260 Rroxscaffold_4G00296270 Rroxscaffold_4G00298840 Rroxscaffold_4G00298890 Rroxscaffold_4G00298900 Rroxscaffold_4G00298930 Rroxscaffold_4G00298960 Rroxscaffold_4G00299220 Rroxscaffold_5G00344530 Rroxscaffold_5G00353770 Rroxscaffold_5G00358640 Rroxscaffold_7G00202240 Rroxscaffold_7G00209000
rosa_rugosa Rorug01G0218600 Rorug01G0251800 Rorug01G0255100 Rorug01G0255200 Rorug01G0255500 Rorug01G0255700 Rorug01G0256400 Rorug01G0276200 Rorug01G0322400 Rorug02G0150200 Rorug02G0150300 Rorug02G0150400 Rorug02G0150700 Rorug02G0150800 Rorug02G0150900 Rorug02G0151000 Rorug02G0151100 Rorug02G0166000 Rorug02G0166100.1 Rorug02G0176300 Rorug02G0176400 Rorug02G0176700 Rorug03G0192200 Rorug03G0193100 Rorug04G0017700 Rorug04G0331400 Rorug05G0129400 Rorug05G0131900 Rorug05G0132200 Rorug05G0132300 Rorug05G0132300 Rorug05G0132400 Rorug05G0132500 Rorug05G0132600 Rorug05G0132700 Rorug05G0132800 Rorug05G0132900 Rorug05G0164000 Rorug05G0164000 Rorug05G0186700 Rorug05G0187000 Rorug05G0323000 Rorug05G0323000 Rorug05G0567400 Rorug07G0136000 Rorug07G0159500
rosa_samantha Rh1CG249900 Rh1CG253000 Rh1DG261400 Rh1DG264400 Rh1DG264800 Rh1DG264900 Rh1DG265600 Rh2AG218700 Rh2AG228900 Rh2AG229000 Rh2BG227800 Rh2BG241900 Rh2BG297700 Rh2DG224600 Rh2DG225000 Rh2DG236900 Rh3AG243400 Rh3CG273500 Rh4DG088000 Rh5CG246800 Rh5CG247800 Rh5CG252000 Rh5CG252100 Rh5CG252200 Rh5CG252500 Rh5CG252600 Rh5CG252800 Rh5CG253100 Rh5CG253200 Rh5CG253300 Rh5CG253900 Rh5CG254100 Rh5CG288700 Rh5CG288800 Rh5CG309700 Rh5CG309800 Rh5DG415100 Rh6BG078900 Rh6BG142900 Rh6CG073600 Rh6CG139500 Rh7CG210700
rosa_wichuraiana Rw0G015410 Rw1G023790 Rw1G023810 Rw1G023830 Rw1G023890 Rw1G023960 Rw1G024030 Rw1G024060 Rw1G024080 Rw1G024100 Rw2G015830 Rw2G015870 Rw2G015890 Rw2G016830 Rw2G016870 Rw2G016890 Rw2G017700 Rw2G017710 Rw2G017730 Rw3G021740 Rw3G026100 Rw4G007870 Rw5G020370 Rw5G020560 Rw5G020590 Rw5G020610 Rw5G020620 Rw5G020640 Rw5G020660 Rw5G023440 Rw5G023480 Rw5G025580 Rw5G025610 Rw5G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1131
AccII CGCG 1 cut(s) 2154
AccIII TCCGGA 1 cut(s) 1996
AciI CCGC 8 cut(s) 306, 1113, 1353, 1916, 1919, 2152, 2427, 2572
AclWI GGATC 8 cut(s) 488, 569, 1382, 1517, 1559, 1572, 2296, 2675
AcoI YGGCCR 1 cut(s) 1362
AcsI RAATTY 4 cut(s) 352, 755, 1131, 2642
AcuI CTGAAG 3 cut(s) 1704, 2087, 2597
AdeI CACNNNGTG 1 cut(s) 593
AfaI GTAC 8 cut(s) 232, 712, 837, 902, 1078, 1578, 1597, 1951
AfiI CCNNNNNNNGG 9 cut(s) 140, 454, 791, 797, 1827, 2346, 2700, 2727, 2811
AflIII ACRYGT 1 cut(s) 2655
AgeI ACCGGT 4 cut(s) 2513, 2693, 2720, 2747
AgsI TTSAA 8 cut(s) 746, 760, 772, 966, 1137, 1964, 2630, 2648
AhdI GACNNNNNGTC 1 cut(s) 642
AhlI ACTAGT 2 cut(s) 641, 838
AjnI CCWGG 8 cut(s) 790, 937, 1328, 1552, 2212, 2313, 2339, 2483
AjuI GAANNNNNNNTTGG 2 cut(s) 202, 234
AleI CACNNNNGTG 1 cut(s) 440
AloI GAACNNNNNNTCC 2 cut(s) 1238, 1270
Alw21I GWGCWC 4 cut(s) 515, 1428, 1798, 2598
Alw44I GTGCAC 1 cut(s) 1424
AlwI GGATC 8 cut(s) 488, 569, 1382, 1517, 1559, 1572, 2296, 2675
Ama87I CYCGRG 1 cut(s) 2369
Aor13HI TCCGGA 1 cut(s) 1996
AoxI GGCC 5 cut(s) 192, 373, 1362, 1817, 2480
ApaLI GTGCAC 1 cut(s) 1424
ApeKI GCWGC 5 cut(s) 293, 303, 881, 2015, 2096
ApoI RAATTY 4 cut(s) 352, 755, 1131, 2642
AsiGI ACCGGT 4 cut(s) 2513, 2693, 2720, 2747
Asp700I GAANNNNTTC 2 cut(s) 1253, 2561
AspLEI GCGC 2 cut(s) 293, 2156
AspS9I GGNCC 7 cut(s) 192, 457, 788, 1693, 1818, 2481, 2569
AsuC2I CCSGG 4 cut(s) 786, 2370, 2371, 2776
AsuHPI GGTGA 8 cut(s) 556, 1073, 1292, 1790, 2708, 2735, 2737, 2762
AsuII TTCGAA 1 cut(s) 1807
AsuNHI GCTAGC 1 cut(s) 59
AvaI CYCGRG 1 cut(s) 2369
AvaII GGWCC 4 cut(s) 457, 788, 1693, 2569
BaeGI GKGCMC 2 cut(s) 1236, 1428
BaeI ACNNNNGTAYC 4 cut(s) 1101, 1134, 2644, 2677
BalI TGGCCA 1 cut(s) 1364
BamHI GGATCC 1 cut(s) 1564
BarI GAAGNNNNNNTAC 2 cut(s) 1702, 1734
BauI CACGAG 1 cut(s) 2115
BbsI GAAGAC 2 cut(s) 1256, 2625
Bbv12I GWGCWC 4 cut(s) 515, 1428, 1798, 2598
BbvCI CCTCAGC 1 cut(s) 2493
BbvI GCAGC 5 cut(s) 305, 315, 893, 2002, 2108
BccI CCATC 4 cut(s) 533, 868, 1221, 2318
BceAI ACGGC 1 cut(s) 165
BciT130I CCWGG 8 cut(s) 792, 939, 1330, 1554, 2214, 2315, 2341, 2485
BciVI GTATCC 1 cut(s) 792
BclI TGATCA 2 cut(s) 156, 2527
BcnI CCSGG 4 cut(s) 786, 2370, 2371, 2776
BcuI ACTAGT 2 cut(s) 641, 838
BfmI CTRYAG 3 cut(s) 138, 568, 627
BfuAI ACCTGC 1 cut(s) 1131
BfuI GTATCC 1 cut(s) 792
BglI GCCNNNNNGGC 1 cut(s) 186
BglII AGATCT 1 cut(s) 816
BisI GCNGC 6 cut(s) 294, 304, 882, 1919, 2016, 2097
BlsI GCNGC 6 cut(s) 295, 305, 883, 1920, 2017, 2098
BmcAI AGTACT 1 cut(s) 837
Bme18I GGWCC 4 cut(s) 457, 788, 1693, 2569
BmeRI GACNNNNNGTC 1 cut(s) 642
BmeT110I CYCGRG 1 cut(s) 2369
BmgT120I GGNCC 7 cut(s) 192, 457, 788, 1693, 1818, 2481, 2569
BmiI GGNNCC 5 cut(s) 458, 459, 1010, 1566, 1694
BmrI ACTGGG 1 cut(s) 1545
BmsI GCATC 9 cut(s) 82, 115, 1285, 1764, 1846, 1875, 2238, 2336, 2533
BmtI GCTAGC 1 cut(s) 63
BmuI ACTGGG 1 cut(s) 1545
BpiI GAAGAC 2 cut(s) 1256, 2625
BpmI CTGGAG 2 cut(s) 1668, 2298
Bpu10I CCTNAGC 1 cut(s) 2493
Bpu14I TTCGAA 1 cut(s) 1807
BpuEI CTTGAG 1 cut(s) 1216
BpuMI CCSGG 4 cut(s) 786, 2370, 2371, 2776
BsaBI GATNNNNATC 3 cut(s) 1392, 2078, 2547
BsaI GGTCTC 2 cut(s) 800, 2500
BsaJI CCNNGG 9 cut(s) 518, 893, 1050, 1329, 1923, 2369, 2370, 2483, 2775
BsaWI WCCGGW 6 cut(s) 1996, 2513, 2693, 2720, 2747, 2804
BsaXI ACNNNNNCTCC 6 cut(s) 1031, 1061, 1238, 1268, 2588, 2618
Bsc4I CCNNNNNNNGG 9 cut(s) 140, 454, 791, 797, 1827, 2346, 2700, 2727, 2811
Bse118I RCCGGY 4 cut(s) 2513, 2693, 2720, 2747
Bse1I ACTGG 7 cut(s) 20, 393, 718, 1540, 1651, 1680, 1981
Bse3DI GCAATG 3 cut(s) 1370, 1421, 2255
Bse8I GATNNNNATC 3 cut(s) 1392, 2078, 2547
BseAI TCCGGA 1 cut(s) 1996
BseBI CCWGG 8 cut(s) 792, 939, 1330, 1554, 2214, 2315, 2341, 2485
BseDI CCNNGG 9 cut(s) 518, 893, 1050, 1329, 1923, 2369, 2370, 2483, 2775
BseGI GGATG 7 cut(s) 273, 879, 1232, 1339, 1449, 1612, 2310
BseJI GATNNNNATC 3 cut(s) 1392, 2078, 2547
BseLI CCNNNNNNNGG 9 cut(s) 140, 454, 791, 797, 1827, 2346, 2700, 2727, 2811
BseMI GCAATG 3 cut(s) 1370, 1421, 2255
BseMII CTCAG 9 cut(s) 195, 604, 672, 1594, 2151, 2187, 2188, 2484, 2583
BseNI ACTGG 7 cut(s) 20, 393, 718, 1540, 1651, 1680, 1981
BseRI GAGGAG 3 cut(s) 647, 1259, 2215
BseSI GKGCMC 2 cut(s) 1236, 1428
BseXI GCAGC 5 cut(s) 305, 315, 893, 2002, 2108
BseYI CCCAGC 2 cut(s) 725, 869
BsgI GTGCAG 1 cut(s) 2061
Bsh1236I CGCG 1 cut(s) 2154
BshFI GGCC 5 cut(s) 194, 375, 1364, 1819, 2482
BshTI ACCGGT 4 cut(s) 2513, 2693, 2720, 2747
BsiHKAI GWGCWC 4 cut(s) 515, 1428, 1798, 2598
BsiHKCI CYCGRG 1 cut(s) 2369
BsiWI CGTACG 1 cut(s) 230
BslFI GGGAC 4 cut(s) 470, 742, 1686, 1706
BslI CCNNNNNNNGG 9 cut(s) 140, 454, 791, 797, 1827, 2346, 2700, 2727, 2811
BsmBI CGTCTC 1 cut(s) 714
BsmFI GGGAC 4 cut(s) 470, 742, 1686, 1706
BsmI GAATGC 4 cut(s) 314, 372, 2031, 2370
BsnI GGCC 5 cut(s) 194, 375, 1364, 1819, 2482
Bso31I GGTCTC 2 cut(s) 800, 2500
BsoBI CYCGRG 1 cut(s) 2369
Bsp119I TTCGAA 1 cut(s) 1807
Bsp1286I GDGCHC 5 cut(s) 515, 1236, 1428, 1798, 2598
Bsp13I TCCGGA 1 cut(s) 1996
Bsp1407I TGTACA 1 cut(s) 900
BspACI CCGC 8 cut(s) 306, 1113, 1353, 1916, 1919, 2152, 2427, 2572
BspANI GGCC 5 cut(s) 194, 375, 1364, 1819, 2482
BspCNI CTCAG 9 cut(s) 196, 603, 673, 1593, 2150, 2187, 2188, 2485, 2584
BspEI TCCGGA 1 cut(s) 1996
BspFNI CGCG 1 cut(s) 2154
BspHI TCATGA 1 cut(s) 1384
BspLI GGNNCC 5 cut(s) 458, 459, 1010, 1566, 1694
BspMAI CTGCAG 1 cut(s) 631
BspMI ACCTGC 1 cut(s) 1131
BspOI GCTAGC 1 cut(s) 63
BspPI GGATC 8 cut(s) 488, 569, 1382, 1517, 1559, 1572, 2296, 2675
BspQI GCTCTTC 1 cut(s) 985
BspT104I TTCGAA 1 cut(s) 1807
BspTNI GGTCTC 2 cut(s) 800, 2500
BsrDI GCAATG 3 cut(s) 1370, 1421, 2255
BsrFI RCCGGY 4 cut(s) 2513, 2693, 2720, 2747
BsrGI TGTACA 1 cut(s) 900
BsrI ACTGG 7 cut(s) 20, 393, 718, 1540, 1651, 1680, 1981
BssAI RCCGGY 4 cut(s) 2513, 2693, 2720, 2747
BssECI CCNNGG 9 cut(s) 518, 893, 1050, 1329, 1923, 2369, 2370, 2483, 2775
BssSI CACGAG 1 cut(s) 2115
BssT1I CCWWGG 2 cut(s) 518, 1050
Bst2BI CACGAG 1 cut(s) 2115
Bst2UI CCWGG 8 cut(s) 792, 939, 1330, 1554, 2214, 2315, 2341, 2485
Bst4CI ACNGT 7 cut(s) 572, 694, 980, 1081, 1788, 2237, 2600
Bst6I CTCTTC 2 cut(s) 985, 2457
BstAPI GCANNNNNTGC 1 cut(s) 134
BstAUI TGTACA 1 cut(s) 900
BstBI TTCGAA 1 cut(s) 1807
BstC8I GCNNGC 6 cut(s) 61, 135, 511, 515, 2031, 2377
BstEII GGTNACC 1 cut(s) 1091
BstENI CCTNNNNNAGG 2 cut(s) 138, 1825
BstF5I GGATG 7 cut(s) 273, 879, 1232, 1339, 1449, 1612, 2310
BstFNI CGCG 1 cut(s) 2154
BstHHI GCGC 2 cut(s) 293, 2156
BstMWI GCNNNNNNNGC 5 cut(s) 134, 186, 200, 1999, 2039
BstNI CCWGG 8 cut(s) 792, 939, 1330, 1554, 2214, 2315, 2341, 2485
BstNSI RCATGY 3 cut(s) 476, 2379, 2659
BstPI GGTNACC 1 cut(s) 1091
BstSFI CTRYAG 3 cut(s) 138, 568, 627
BstSLI GKGCMC 2 cut(s) 1236, 1428
BstUI CGCG 1 cut(s) 2154
BstV1I GCAGC 5 cut(s) 305, 315, 893, 2002, 2108
BstV2I GAAGAC 2 cut(s) 1256, 2625
BstX2I RGATCY 5 cut(s) 816, 1522, 1564, 2301, 2667
BstXI CCANNNNNNTGG 2 cut(s) 1057, 2314
BstYI RGATCY 5 cut(s) 816, 1522, 1564, 2301, 2667
BsuI GTATCC 1 cut(s) 792
BsuRI GGCC 5 cut(s) 194, 375, 1364, 1819, 2482
BtgZI GCGATG 1 cut(s) 2451
BtsCI GGATG 7 cut(s) 273, 879, 1232, 1339, 1449, 1612, 2310
BtsI GCAGTG 2 cut(s) 128, 1365
BtsIMutI CAGTG 7 cut(s) 128, 243, 400, 577, 598, 858, 1365
BveI ACCTGC 1 cut(s) 1131
Cac8I GCNNGC 6 cut(s) 61, 135, 511, 515, 2031, 2377
CciI TCATGA 1 cut(s) 1384
CfoI GCGC 2 cut(s) 293, 2156
Cfr10I RCCGGY 4 cut(s) 2513, 2693, 2720, 2747
Cfr13I GGNCC 7 cut(s) 192, 457, 788, 1693, 1818, 2481, 2569
Cfr9I CCCGGG 1 cut(s) 2369
CseI GACGC 1 cut(s) 731
CsiI ACCWGGT 1 cut(s) 1552
Csp6I GTAC 8 cut(s) 231, 711, 836, 901, 1077, 1577, 1596, 1950
CspAI ACCGGT 4 cut(s) 2513, 2693, 2720, 2747
CviAII CATG 7 cut(s) 473, 1276, 1385, 2376, 2531, 2566, 2656
CviQI GTAC 8 cut(s) 231, 711, 836, 901, 1077, 1577, 1596, 1950
DraIII CACNNNGTG 1 cut(s) 593
DriI GACNNNNNGTC 1 cut(s) 642
EaeI YGGCCR 1 cut(s) 1362
Eam1104I CTCTTC 2 cut(s) 985, 2457
Eam1105I GACNNNNNGTC 1 cut(s) 642
EarI CTCTTC 2 cut(s) 985, 2457
Eco130I CCWWGG 2 cut(s) 518, 1050
Eco147I AGGCCT 1 cut(s) 375
Eco31I GGTCTC 2 cut(s) 800, 2500
Eco32I GATATC 1 cut(s) 338
Eco47I GGWCC 4 cut(s) 457, 788, 1693, 2569
Eco57I CTGAAG 3 cut(s) 1704, 2087, 2597
Eco88I CYCGRG 1 cut(s) 2369
Eco91I GGTNACC 1 cut(s) 1091
EcoNI CCTNNNNNAGG 2 cut(s) 138, 1825
EcoO109I RGGNCCY 3 cut(s) 457, 1693, 1818
EcoO65I GGTNACC 1 cut(s) 1091
EcoRI GAATTC 1 cut(s) 755
EcoRII CCWGG 8 cut(s) 790, 937, 1328, 1552, 2212, 2313, 2339, 2483
EcoRV GATATC 1 cut(s) 338
EcoT14I CCWWGG 2 cut(s) 518, 1050
EcoT22I ATGCAT 1 cut(s) 2244
ErhI CCWWGG 2 cut(s) 518, 1050
Esp3I CGTCTC 1 cut(s) 714
FaeI CATG 7 cut(s) 476, 1279, 1388, 2379, 2534, 2569, 2659
FaqI GGGAC 4 cut(s) 470, 742, 1686, 1706
FatI CATG 7 cut(s) 472, 1275, 1384, 2375, 2530, 2565, 2655
FauI CCCGC 1 cut(s) 1346
FauNDI CATATG 1 cut(s) 2553
FbaI TGATCA 2 cut(s) 156, 2527
Fnu4HI GCNGC 6 cut(s) 294, 304, 882, 1919, 2016, 2097
FokI GGATG 7 cut(s) 260, 886, 1239, 1346, 1436, 1619, 2297
Fsp4HI GCNGC 6 cut(s) 294, 304, 882, 1919, 2016, 2097
GlaI GCGC 2 cut(s) 292, 2155
GluI GCNGC 6 cut(s) 294, 304, 882, 1919, 2016, 2097
GsaI CCCAGC 2 cut(s) 729, 873
GsuI CTGGAG 2 cut(s) 1668, 2298
HaeIII GGCC 5 cut(s) 194, 375, 1364, 1819, 2482
HgaI GACGC 1 cut(s) 731
HhaI GCGC 2 cut(s) 293, 2156
Hin1II CATG 7 cut(s) 476, 1279, 1388, 2379, 2534, 2569, 2659
Hin6I GCGC 2 cut(s) 291, 2154
HinP1I GCGC 2 cut(s) 291, 2154
HindIII AAGCTT 2 cut(s) 1712, 1941
HinfI GANTC 9 cut(s) 210, 746, 924, 1460, 1601, 1664, 2450, 2562, 2687
HphI GGTGA 8 cut(s) 556, 1073, 1292, 1790, 2708, 2735, 2737, 2762
Hpy166II GTNNAC 6 cut(s) 445, 1084, 1267, 1426, 1663, 2686
Hpy8I GTNNAC 6 cut(s) 445, 1084, 1267, 1426, 1663, 2686
Hpy99I CGWCG 1 cut(s) 2459
HpyCH4III ACNGT 7 cut(s) 572, 694, 980, 1081, 1788, 2237, 2600
HpyCH4IV ACGT 2 cut(s) 1253, 2391
HpyF10VI GCNNNNNNNGC 5 cut(s) 134, 186, 200, 1999, 2039
HpySE526I ACGT 2 cut(s) 1253, 2391
Hsp92II CATG 7 cut(s) 476, 1279, 1388, 2379, 2534, 2569, 2659
HspAI GCGC 2 cut(s) 291, 2154
KflI GGGWCCC 1 cut(s) 457
Kpn2I TCCGGA 1 cut(s) 1996
Ksp22I TGATCA 2 cut(s) 156, 2527
LguI GCTCTTC 1 cut(s) 985
LmnI GCTCC 7 cut(s) 331, 603, 941, 1937, 1999, 2161, 2226
Lsp1109I GCAGC 5 cut(s) 305, 315, 893, 2002, 2108
LweI GCATC 9 cut(s) 82, 115, 1285, 1764, 1846, 1875, 2238, 2336, 2533
MabI ACCWGGT 1 cut(s) 1552
MaeII ACGT 2 cut(s) 1253, 2391
MaeIII GTNAC 8 cut(s) 241, 395, 688, 928, 983, 1091, 2600, 2743
MfeI CAATTG 1 cut(s) 1836
MflI RGATCY 5 cut(s) 816, 1522, 1564, 2301, 2667
MhlI GDGCHC 5 cut(s) 515, 1236, 1428, 1798, 2598
MlsI TGGCCA 1 cut(s) 1364
MluNI TGGCCA 1 cut(s) 1364
MlyI GAGTC 4 cut(s) 1454, 1610, 1658, 2681
MmeI TCCRAC 6 cut(s) 676, 1584, 1966, 2427, 2478, 2631
Mox20I TGGCCA 1 cut(s) 1364
Mph1103I ATGCAT 1 cut(s) 2244
MroI TCCGGA 1 cut(s) 1996
MroXI GAANNNNTTC 2 cut(s) 1253, 2561
MscI TGGCCA 1 cut(s) 1364
MseI TTAA 5 cut(s) 1325, 1437, 1470, 1946, 2127
MslI CAYNNNNRTG 2 cut(s) 440, 1854
Msp20I TGGCCA 1 cut(s) 1364
MspA1I CMGCKG 6 cut(s) 306, 359, 707, 1115, 1724, 2015
MunI CAATTG 1 cut(s) 1836
Mva1269I GAATGC 4 cut(s) 314, 372, 2031, 2370
MvaI CCWGG 8 cut(s) 792, 939, 1330, 1554, 2214, 2315, 2341, 2485
MvnI CGCG 1 cut(s) 2154
MwoI GCNNNNNNNGC 5 cut(s) 134, 186, 200, 1999, 2039
NciI CCSGG 4 cut(s) 786, 2370, 2371, 2776
NdeI CATATG 1 cut(s) 2553
NheI GCTAGC 1 cut(s) 59
NlaIII CATG 7 cut(s) 476, 1279, 1388, 2379, 2534, 2569, 2659
NlaIV GGNNCC 5 cut(s) 458, 459, 1010, 1566, 1694
NmeAIII GCCGAG 1 cut(s) 1480
NmuCI GTSAC 7 cut(s) 241, 395, 688, 928, 983, 2600, 2743
NsiI ATGCAT 1 cut(s) 2244
NspI RCATGY 3 cut(s) 476, 2379, 2659
NspV TTCGAA 1 cut(s) 1807
OliI CACNNNNGTG 1 cut(s) 440
PaeI GCATGC 1 cut(s) 2379
PagI TCATGA 1 cut(s) 1384
PceI AGGCCT 1 cut(s) 375
PciI ACATGT 1 cut(s) 2655
PciSI GCTCTTC 1 cut(s) 985
PcsI WCGNNNNNNNCGW 1 cut(s) 2331
PctI GAATGC 4 cut(s) 314, 372, 2031, 2370
PdmI GAANNNNTTC 2 cut(s) 1253, 2561
PfeI GAWTC 5 cut(s) 210, 746, 924, 2450, 2562
Pfl23II CGTACG 1 cut(s) 230
PfoI TCCNGGA 2 cut(s) 2212, 2313
PinAI ACCGGT 4 cut(s) 2513, 2693, 2720, 2747
PkrI GCNGC 6 cut(s) 295, 305, 883, 1920, 2017, 2098
PleI GAGTC 4 cut(s) 1454, 1609, 1658, 2681
PpsI GAGTC 4 cut(s) 1454, 1609, 1658, 2681
PpuMI RGGWCCY 2 cut(s) 457, 1693
PscI ACATGT 1 cut(s) 2655
Psp5II RGGWCCY 2 cut(s) 457, 1693
Psp6I CCWGG 8 cut(s) 790, 937, 1328, 1552, 2212, 2313, 2339, 2483
PspEI GGTNACC 1 cut(s) 1091
PspFI CCCAGC 2 cut(s) 725, 869
PspGI CCWGG 8 cut(s) 790, 937, 1328, 1552, 2212, 2313, 2339, 2483
PspLI CGTACG 1 cut(s) 230
PspN4I GGNNCC 5 cut(s) 458, 459, 1010, 1566, 1694
PspPI GGNCC 7 cut(s) 192, 457, 788, 1693, 1818, 2481, 2569
PspPPI RGGWCCY 2 cut(s) 457, 1693
PstI CTGCAG 1 cut(s) 631
PsuI RGATCY 5 cut(s) 816, 1522, 1564, 2301, 2667
PvuII CAGCTG 4 cut(s) 359, 707, 1724, 2015
RsaI GTAC 8 cut(s) 232, 712, 837, 902, 1078, 1578, 1597, 1951
RsaNI GTAC 8 cut(s) 231, 711, 836, 901, 1077, 1577, 1596, 1950
RseI CAYNNNNRTG 2 cut(s) 440, 1854
SapI GCTCTTC 1 cut(s) 985
SaqAI TTAA 5 cut(s) 1325, 1437, 1470, 1946, 2127
SatI GCNGC 6 cut(s) 294, 304, 882, 1919, 2016, 2097
Sau96I GGNCC 7 cut(s) 192, 457, 788, 1693, 1818, 2481, 2569
ScaI AGTACT 1 cut(s) 837
SchI GAGTC 4 cut(s) 1454, 1610, 1658, 2681
SduI GDGCHC 5 cut(s) 515, 1236, 1428, 1798, 2598
SexAI ACCWGGT 1 cut(s) 1552
SfaNI GCATC 9 cut(s) 82, 115, 1285, 1764, 1846, 1875, 2238, 2336, 2533
SfcI CTRYAG 3 cut(s) 138, 568, 627
SfuI TTCGAA 1 cut(s) 1807
SgrAI CRCCGGYG 3 cut(s) 2693, 2720, 2747
SinI GGWCC 4 cut(s) 457, 788, 1693, 2569
SmaI CCCGGG 1 cut(s) 2371
SmiMI CAYNNNNRTG 2 cut(s) 440, 1854
SmlI CTYRAG 1 cut(s) 1195
SmoI CTYRAG 1 cut(s) 1195
SpeI ACTAGT 2 cut(s) 641, 838
SphI GCATGC 1 cut(s) 2379
SseBI AGGCCT 1 cut(s) 375
SsiI CCGC 8 cut(s) 306, 1113, 1353, 1916, 1919, 2152, 2427, 2572
StuI AGGCCT 1 cut(s) 375
StyI CCWWGG 2 cut(s) 518, 1050
TaaI ACNGT 7 cut(s) 572, 694, 980, 1081, 1788, 2237, 2600
TaiI ACGT 2 cut(s) 1256, 2394
TaqI TCGA 7 cut(s) 150, 597, 764, 1026, 1807, 1894, 2232
TaqII GACCGA 1 cut(s) 1915
TatI WGTACW 5 cut(s) 835, 900, 1576, 1595, 1949
TauI GCSGC 1 cut(s) 1921
TfiI GAWTC 5 cut(s) 210, 746, 924, 2450, 2562
Tru1I TTAA 5 cut(s) 1325, 1437, 1470, 1946, 2127
Tru9I TTAA 5 cut(s) 1325, 1437, 1470, 1946, 2127
TscAI CASTG 7 cut(s) 135, 250, 400, 577, 598, 858, 1372
TseFI GTSAC 7 cut(s) 241, 395, 688, 928, 983, 2600, 2743
TseI GCWGC 5 cut(s) 293, 303, 881, 2015, 2096
Tsp45I GTSAC 7 cut(s) 241, 395, 688, 928, 983, 2600, 2743
TspDTI ATGAA 9 cut(s) 17, 639, 1264, 1373, 1388, 1827, 2475, 2554, 2570
TspGWI ACGGA 2 cut(s) 1187, 2574
TspMI CCCGGG 1 cut(s) 2369
TspRI CASTG 7 cut(s) 135, 250, 400, 577, 598, 858, 1372
VneI GTGCAC 1 cut(s) 1424
VpaK11BI GGWCC 4 cut(s) 457, 788, 1693, 2569
XagI CCTNNNNNAGG 2 cut(s) 138, 1825
XapI RAATTY 4 cut(s) 352, 755, 1131, 2642
XceI RCATGY 3 cut(s) 476, 2379, 2659
XmaI CCCGGG 1 cut(s) 2369
XmnI GAANNNNTTC 2 cut(s) 1253, 2561
ZrmI AGTACT 1 cut(s) 837
Zsp2I ATGCAT 1 cut(s) 2244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.