Rroxscaffold_4G00298900

L-type lectin-domain containing receptor kinase IX.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000038
Physical Location & Seq
Forward (+)
18783763 .. 18785682
1920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00298900.1

Sequence Viewer

Length: 1920 bp
ATGATGTCTGAAATTAGAAGCAGCAGTGCGCAAGCAATCTGCTTCTGTAATATTTGCTTCCTAATTATTTTCATCAATTTCTTCTCCCACTTTGCTCATCCACTCAACTTCAATATACCTCAGTTCGACCAGAGTGCAAATGGAGTTGTCTTTGAAGGTGCTGCCCAGTTTTCATCGGGAAGGATTGAGCTCAACAGAGGCACTTATTTCGATACTGGACGTGCTATTTATGCAGAGCCTTTGCATCTATGGGACAATGTTACTGGGTCGCTGGCAGACTTCACTACTCATTTCACTTTCATGGTCAACCTTGGTTCTGATCCTAACGATGGGAGCGCCACCGATGGAATTGCCTTTTTCCTTGCTCCTGTTGGCTACGGTATTCCACCCAACTCTGGTGCTTATCGTCTGGGATTATTCAACTCCACCAACGATTTTAATGCCTTGTCCAACCAGATTGTAGCCGTAGAGTTCGACACCCTTGGAAACGGTGATTGGGATACCGCCGAGCCGCATATTGGGATAGACATCAATAAAATCTCTTCGGTTACGTCCGCCAATTGGAATACCAGTAACATCATCGGGAAGACAGGTAATGCAAGGATAACTTACAACGCTACTACCAACAACCTTACTGTGTTTTGGACATTCGAGGAAAACATAAACCTCGGTTTTCCGGGCAATTCTACTTTTAATCTTACTCACCATGTTGACTTGCGAAAGATTCTTCCCGAAAGGGTTACAATCGGTTTTTCTGCTTCATCTGGATTAAACCCTGGTCAGTATTCTTTATATTCATGGGCGTTTGATTCGACTTTGGTGGATAGTGATATTAGAAGAACCGGCAGCAAGGAAAAGAAGAAAAAGATATTCTTGATACTGGTCATTGCAGTTCCTGGTTTCACTTTGACGCTTGGTTCAGTCATATGTTGGTTGATGGTATTAAGGAATCGGAGAAACAATTACTCCGGCCAAGTCTCTGATCTGGAGAAGCTAGCCTTTCCAAAACGATTTGCTTACCAAGAATTGTTTGCTGCCACCAACGGGTTTGCAGACGATAGAAGGCTAGGCCAAGGAGGGTCGGGACAAGTATATAAAGGACTCCTACAAGACCTTGGAGGCTGCACAGTTGCCGTGAAGAGAATCTTTGCAAGATCTGATCAGCAAGATGAGAAAGTCTTCATCAATGAAGTCAAAATCATCAGCCGCTTAATCCATCGAAACATGGTGCAGTTCATTGGGTGGTGTCATGAGCAAGGGGAATGCTTACTTGTTTATGCATATATGCCAAATACCAGCCTCGACACGCATCTATTTGGCAACAGAACAATCCTGCAATGGGACAACAGGTACAAGATAGCTTTGGGCTTGGCCTCAGCCCTTCATTATCTACATGAAGATGCAGAGCAGTGTGTACTTCATAGGGATATCAAACCAGCTAACGTACTGTTGGATGATGACTTCAGCACTAAGCTTGGTGATTTTGGTATCGCTAAGCTCGTGGATCCCCGCTTGAGGTCTCAGACAACAGGATTGGTAGGGACGTTTGGATACATGGCCCCGGAATATGCTAATGAAGGGAGGGCTAGTAAGGAATCTGACATGTATAGTTTTGGAGTTGTAGCCTTGGAAATTGCTTGTGGAAGGAAGACTTACCACGACGGTAAAGATCACGTGCCACTCTTTAGGTGGGTTTGGCAGTTGTTCCTTGGAGGAAATATTCTGGACGCAGCTGATGAAAGATTAGAAATGAATTATGATCGAAATGAAATGAAATACTTGTTGATTGTTGGACTATGGTGTACTCACCCCAATTACAAGGAAAGACCCAAAGCAGGACAGGTGATGGAGGTTATTCAGCATAAAGCACCATTGCCGGAACTTCCATATGACATGTATGGTGATCTAGAATTGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

639

Amino Acids

71.58

Weight (kDa)

5.81

Isoelectric Point (pI)

38.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 35 - 276 1.6e-60 Legume lectin domain
Lectin_L-type_dom PF18483 93 - 258 5.5e-06 Legume lectin beta-barrel domain
Pkinase PF00069 352 - 616 2.7e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 353 - 556 2.3e-42 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10530 AT5G65600
fragaria_vesca FvH4_1g17770 FvH4_1g19171 FvH4_1g19180 FvH4_1g19922 FvH4_1g19923 FvH4_1g19940 FvH4_1g19950 FvH4_3g19030 FvH4_3g19040 FvH4_3g19350 FvH4_3g19361 FvH4_3g19370 FvH4_3g19372 FvH4_3g19390 FvH4_3g19390 FvH4_3g19400 FvH4_3g19400 FvH4_3g23100 FvH4_3g32500 FvH4_3g39140 FvH4_4g12891 FvH4_4g12900 FvH4_5g13890 FvH4_6g23490 FvH4_7g14930 FvH4_7g14950 FvH4_7g15082 FvH4_7g16980
malus_domestica MD01G1043400.v1.1 MD01G1043500.v1.1 MD03G1232800.v1.1 MD03G1232900.v1.1 MD03G1233000.v1.1 MD03G1233100.v1.1 MD03G1233200.v1.1 MD03G1233300.v1.1 MD03G1233600.v1.1 MD03G1233700.v1.1 MD03G1233900.v1.1 MD03G1234100.v1.1 MD03G1234300.v1.1 MD03G1234400.v1.1 MD03G1234500.v1.1 MD03G1234600.v1.1 MD08G1053200.v1.1 MD08G1053400.v1.1 MD08G1053500.v1.1 MD08G1053600.v1.1 MD08G1053800.v1.1 MD08G1053900.v1.1 MD08G1054000.v1.1 MD08G1054100.v1.1 MD08G1054200.v1.1 MD08G1054400.v1.1 MD08G1054600.v1.1 MD09G1175200.v1.1 MD09G1289800.v1.1 MD09G1289900.v1.1 MD11G1253600.v1.1 MD11G1254300.v1.1 MD11G1254500.v1.1 MD11G1254900.v1.1 MD11G1255100.v1.1 MD15G1042500.v1.1 MD15G1053100.v1.1 MD15G1053200.v1.1 MD15G1307500.v1.1
prunus_persica Prupe.1G157800_v2.0.a1 Prupe.1G395700_v2.0.a1 Prupe.4G174600_v2.0.a1 Prupe.4G174800_v2.0.a1 Prupe.4G174900_v2.0.a1 Prupe.4G175000_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175300_v2.0.a1 Prupe.4G175400_v2.0.a1 Prupe.4G175500_v2.0.a1 Prupe.4G175600_v2.0.a1 Prupe.4G175700_v2.0.a1 Prupe.4G241200_v2.0.a1 Prupe.6G208500_v2.0.a1 Prupe.6G208700_v2.0.a1 Prupe.6G208800_v2.0.a1 Prupe.8G117500_v2.0.a1 Prupe.I004200_v2.0.a1 Prupe.I004300_v2.0.a1
pyrus_communis pycom03g18010 pycom03g18050 pycom03g18070 pycom03g18100 pycom08g04440 pycom09g19760 pycom11g22500 pycom11g22510 pycom11g22520
rosa_chinensis RchiOBHm_Chr1g0318811 RchiOBHm_Chr1g0329471 RchiOBHm_Chr1g0340841 RchiOBHm_Chr1g0340931 RchiOBHm_Chr1g0356861 RchiOBHm_Chr1g0357251 RchiOBHm_Chr1g0357261 RchiOBHm_Chr1g0357321 RchiOBHm_Chr1g0360231 RchiOBHm_Chr1g0365521 RchiOBHm_Chr1g0365571 RchiOBHm_Chr1g0365581 RchiOBHm_Chr2g0108101 RchiOBHm_Chr2g0108131 RchiOBHm_Chr2g0108161 RchiOBHm_Chr2g0108191 RchiOBHm_Chr2g0108201 RchiOBHm_Chr2g0110211 RchiOBHm_Chr2g0110221 RchiOBHm_Chr2g0110261 RchiOBHm_Chr2g0110301 RchiOBHm_Chr2g0111801 RchiOBHm_Chr2g0111821 RchiOBHm_Chr2g0128081 RchiOBHm_Chr2g0151141 RchiOBHm_Chr3g0469441 RchiOBHm_Chr3g0481491 RchiOBHm_Chr4g0399611 RchiOBHm_Chr4g0414891 RchiOBHm_Chr5g0031941 RchiOBHm_Chr5g0032011 RchiOBHm_Chr5g0032051 RchiOBHm_Chr5g0032101 RchiOBHm_Chr5g0032421 RchiOBHm_Chr5g0032461 RchiOBHm_Chr5g0032481 RchiOBHm_Chr5g0032541 RchiOBHm_Chr5g0032571 RchiOBHm_Chr5g0032591 RchiOBHm_Chr5g0032631 RchiOBHm_Chr5g0037251 RchiOBHm_Chr5g0037271 RchiOBHm_Chr5g0037281 RchiOBHm_Chr5g0037291 RchiOBHm_Chr5g0040701 RchiOBHm_Chr5g0040731 RchiOBHm_Chr5g0059491 RchiOBHm_Chr6g0257841 RchiOBHm_Chr6g0274701 RchiOBHm_Chr7g0212711
rosa_laevigata RLG00000002585 RLG00000002586 RLG00000008111 RLG00000009258 RLG00000012123 RLG00000014148 RLG00000014734 RLG00000017640 RLG00000017642 RLG00000017645 RLG00000017646 RLG00000017795 RLG00000017796 RLG00000017925 RLG00000017926 RLG00000020068 RLG00000023393 RLG00000024495 RLG00000028027 RLG00000028033 RLG00000028034 RLG00000028035 RLG00000028037 RLG00000028040 RLG00000028041 RLG00000028072 RLG00000028159 RLG00000028160 RLG00000033360 RLG00000033399 RLG00000033401 RLG00000033402 RLG00000033403 RLG00000033404 RLG00000033405 RLG00000033407 RLG00000033408 RLG00000033411 RLG00000033414 RLG00000033470 RLG00000033769 RLG00000033772 RLG00000033997
rosa_multiflora Rmu_co8044118.1_g000001 Rmu_co8077552.1_g000001 Rmu_co8082100.1_g000001 Rmu_co8171646.1_g000001 Rmu_co8225604.1_g000001 Rmu_co8285705.1_g000001 Rmu_co8296369.1_g000001 Rmu_co8319685.1_g000001 Rmu_co8326977.1_g000001 Rmu_co8421957.1_g000001 Rmu_co8457997.1_g000001 Rmu_co8464379.1_g000001 Rmu_co8466539.1_g000001 Rmu_sc0000055.1_g000016 Rmu_sc0000064.1_g000032 Rmu_sc0000316.1_g000004 Rmu_sc0000316.1_g000010 Rmu_sc0000316.1_g000011 Rmu_sc0000394.1_g000016 Rmu_sc0001017.1_g000022 Rmu_sc0001484.1_g000003 Rmu_sc0002530.1_g000028 Rmu_sc0002530.1_g000031 Rmu_sc0002530.1_g000035 Rmu_sc0002587.1_g000043 Rmu_sc0002719.1_g000003 Rmu_sc0002719.1_g000005 Rmu_sc0002964.1_g000011 Rmu_sc0003031.1_g000001 Rmu_sc0003031.1_g000014 Rmu_sc0003031.1_g000027 Rmu_sc0003031.1_g000053 Rmu_sc0003552.1_g000003 Rmu_sc0003656.1_g000001 Rmu_sc0003916.1_g000001 Rmu_sc0003916.1_g000003 Rmu_sc0004100.1_g000001 Rmu_sc0004129.1_g000008 Rmu_sc0004365.1_g000001 Rmu_sc0004365.1_g000002 Rmu_sc0004542.1_g000017 Rmu_sc0004792.1_g000029 Rmu_sc0004792.1_g000032 Rmu_sc0004792.1_g000034 Rmu_sc0004792.1_g000035 Rmu_sc0004927.1_g000003 Rmu_sc0004927.1_g000005 Rmu_sc0004927.1_g000013 Rmu_sc0004927.1_g000023 Rmu_sc0005002.1_g000009 Rmu_sc0005002.1_g000028 Rmu_sc0005278.1_g000024 Rmu_sc0005278.1_g000025 Rmu_sc0005375.1_g000022 Rmu_sc0005728.1_g000005 Rmu_sc0005728.1_g000007 Rmu_sc0005770.1_g000017 Rmu_sc0005808.1_g000002 Rmu_sc0005808.1_g000004 Rmu_sc0006798.1_g000002 Rmu_sc0006798.1_g000003 Rmu_sc0006798.1_g000006 Rmu_sc0006798.1_g000007 Rmu_sc0006798.1_g000011 Rmu_sc0007406.1_g000014 Rmu_sc0007406.1_g000025 Rmu_sc0007965.1_g000011 Rmu_sc0009840.1_g000001 Rmu_sc0011812.1_g000005 Rmu_sc0015491.1_g000002 Rmu_sc0019008.1_g000001 Rmu_sc0019103.1_g000001 Rmu_sc0020236.1_g000002 Rmu_sc0021706.1_g000002 Rmu_sc0022958.1_g000008 Rmu_sc0026238.1_g000001 Rmu_sc0032550.1_g000001 Rmu_sc0034983.1_g000001 Rmu_sc0039890.1_g000002 Rmu_sc0041272.1_g000001 Rmu_sc0041373.1_g000001 Rmu_ssc0000100.1_g000012 Rmu_ssc0000100.1_g000017 Rmu_ssc0000100.1_g000031 Rmu_ssc0000100.1_g000033 Rmu_ssc0000386.1_g000042
rosa_roxburghii Rroxscaffold_1G00039940 Rroxscaffold_1G00039970 Rroxscaffold_1G00039980 Rroxscaffold_1G00043650 Rroxscaffold_1G00043700 Rroxscaffold_1G00047420 Rroxscaffold_1G00047430 Rroxscaffold_1G00047450 Rroxscaffold_1G00047470 Rroxscaffold_1G00047480 Rroxscaffold_1G00047500 Rroxscaffold_1G00047510 Rroxscaffold_1G00047520 Rroxscaffold_1G00047540 Rroxscaffold_1G00047570 Rroxscaffold_1G00047690 Rroxscaffold_1G00047720 Rroxscaffold_1G00047730 Rroxscaffold_1G00047740 Rroxscaffold_1G00047880 Rroxscaffold_1G00047900 Rroxscaffold_1G00047910 Rroxscaffold_1G00047920 Rroxscaffold_1G00047940 Rroxscaffold_1G00047950 Rroxscaffold_1G00047970 Rroxscaffold_1G00047980 Rroxscaffold_1G00048000 Rroxscaffold_2G00132060 Rroxscaffold_2G00132100 Rroxscaffold_2G00132110 Rroxscaffold_2G00133580 Rroxscaffold_2G00133630 Rroxscaffold_2G00133640 Rroxscaffold_2G00135480 Rroxscaffold_2G00135490 Rroxscaffold_2G00135530 Rroxscaffold_2G00135600 Rroxscaffold_2G00135630 Rroxscaffold_4G00291170 Rroxscaffold_4G00296260 Rroxscaffold_4G00296270 Rroxscaffold_4G00298840 Rroxscaffold_4G00298890 Rroxscaffold_4G00298900 Rroxscaffold_4G00298930 Rroxscaffold_4G00298960 Rroxscaffold_4G00299220 Rroxscaffold_5G00344530 Rroxscaffold_5G00353770 Rroxscaffold_5G00358640 Rroxscaffold_7G00202240 Rroxscaffold_7G00209000
rosa_rugosa Rorug01G0218600 Rorug01G0251800 Rorug01G0255100 Rorug01G0255200 Rorug01G0255500 Rorug01G0255700 Rorug01G0256400 Rorug01G0276200 Rorug01G0322400 Rorug02G0150200 Rorug02G0150300 Rorug02G0150400 Rorug02G0150700 Rorug02G0150800 Rorug02G0150900 Rorug02G0151000 Rorug02G0151100 Rorug02G0166000 Rorug02G0166100.1 Rorug02G0176300 Rorug02G0176400 Rorug02G0176700 Rorug03G0192200 Rorug03G0193100 Rorug04G0017700 Rorug04G0331400 Rorug05G0129400 Rorug05G0131900 Rorug05G0132200 Rorug05G0132300 Rorug05G0132300 Rorug05G0132400 Rorug05G0132500 Rorug05G0132600 Rorug05G0132700 Rorug05G0132800 Rorug05G0132900 Rorug05G0164000 Rorug05G0164000 Rorug05G0186700 Rorug05G0187000 Rorug05G0323000 Rorug05G0323000 Rorug05G0567400 Rorug07G0136000 Rorug07G0159500
rosa_samantha Rh1CG249900 Rh1CG253000 Rh1DG261400 Rh1DG264400 Rh1DG264800 Rh1DG264900 Rh1DG265600 Rh2AG218700 Rh2AG228900 Rh2AG229000 Rh2BG227800 Rh2BG241900 Rh2BG297700 Rh2DG224600 Rh2DG225000 Rh2DG236900 Rh3AG243400 Rh3CG273500 Rh4DG088000 Rh5CG246800 Rh5CG247800 Rh5CG252000 Rh5CG252100 Rh5CG252200 Rh5CG252500 Rh5CG252600 Rh5CG252800 Rh5CG253100 Rh5CG253200 Rh5CG253300 Rh5CG253900 Rh5CG254100 Rh5CG288700 Rh5CG288800 Rh5CG309700 Rh5CG309800 Rh5DG415100 Rh6BG078900 Rh6BG142900 Rh6CG073600 Rh6CG139500 Rh7CG210700
rosa_wichuraiana Rw0G015410 Rw1G023790 Rw1G023810 Rw1G023830 Rw1G023890 Rw1G023960 Rw1G024030 Rw1G024060 Rw1G024080 Rw1G024100 Rw2G015830 Rw2G015870 Rw2G015890 Rw2G016830 Rw2G016870 Rw2G016890 Rw2G017700 Rw2G017710 Rw2G017730 Rw3G021740 Rw3G026100 Rw4G007870 Rw5G020370 Rw5G020560 Rw5G020590 Rw5G020610 Rw5G020620 Rw5G020640 Rw5G020660 Rw5G023440 Rw5G023480 Rw5G025580 Rw5G025610 Rw5G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 30
AciI CCGC 5 cut(s) 504, 512, 555, 1207, 1510
AclWI GGATC 3 cut(s) 314, 1499, 1512
AcoI YGGCCR 1 cut(s) 970
AcuI CTGAAG 1 cut(s) 1447
AcvI CACGTG 1 cut(s) 1675
AfaI GTAC 4 cut(s) 1352, 1416, 1446, 1804
AfiI CCNNNNNNNGG 8 cut(s) 329, 395, 518, 561, 1044, 1339, 1515, 1835
AflIII ACRYGT 2 cut(s) 1602, 1893
AgsI TTSAA 3 cut(s) 112, 155, 421
AjiI CACGTC 1 cut(s) 221
AjnI CCWGG 2 cut(s) 775, 895
AjuI GAANNNNNNNTTGG 2 cut(s) 478, 510
AluBI AGCT 7 cut(s) 190, 994, 1361, 1439, 1474, 1498, 1733
AluI AGCT 7 cut(s) 190, 994, 1361, 1439, 1474, 1498, 1733
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 2 cut(s) 982, 1524
AlwI GGATC 3 cut(s) 314, 1499, 1512
AlwNI CAGNNNCTG 1 cut(s) 896
AoxI GGCC 4 cut(s) 970, 1069, 1371, 1557
ApeKI GCWGC 6 cut(s) 21, 161, 846, 1034, 1122, 1730
Asp700I GAANNNNTTC 1 cut(s) 1178
AspLEI GCGC 2 cut(s) 31, 338
AspS9I GGNCC 1 cut(s) 1558
AsuC2I CCSGG 2 cut(s) 678, 1562
AsuHPI GGTGA 6 cut(s) 503, 695, 1490, 1799, 1855, 1913
AsuNHI GCTAGC 1 cut(s) 994
BamHI GGATCC 1 cut(s) 1504
BanII GRGCYC 1 cut(s) 192
BauI CACGAG 1 cut(s) 1499
BbrPI CACGTG 1 cut(s) 1675
BbsI GAAGAC 3 cut(s) 593, 1171, 1655
Bbv12I GWGCWC 1 cut(s) 192
BbvCI CCTCAGC 1 cut(s) 1375
BbvI GCAGC 6 cut(s) 33, 148, 858, 1021, 1109, 1742
BccI CCATC 5 cut(s) 323, 338, 931, 1224, 1840
BceAI ACGGC 2 cut(s) 449, 1118
BcgI CGANNNNNNTGC 8 cut(s) 116, 150, 190, 224, 332, 366, 422, 456
BciT130I CCWGG 2 cut(s) 777, 897
BciVI GTATCC 2 cut(s) 493, 1544
BclI TGATCA 1 cut(s) 1159
BcnI CCSGG 2 cut(s) 678, 1562
BcoDI GTCTC 2 cut(s) 982, 1524
BfaI CTAG 4 cut(s) 995, 1067, 1587, 1907
BfoI RGCGCY 1 cut(s) 339
BfuI GTATCC 2 cut(s) 493, 1544
BglII AGATCT 1 cut(s) 1154
BisI GCNGC 8 cut(s) 22, 162, 512, 847, 1035, 1123, 1207, 1731
BlpI GCTNAGC 1 cut(s) 1494
BlsI GCNGC 8 cut(s) 23, 163, 513, 848, 1036, 1124, 1208, 1732
Bme1390I CCNGG 4 cut(s) 678, 777, 897, 1562
BmgBI CACGTC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 1558
BmiI GGNNCC 2 cut(s) 1506, 1560
BmrFI CCNGG 4 cut(s) 678, 777, 897, 1562
BmrI ACTGGG 2 cut(s) 160, 273
BmsI GCATC 3 cut(s) 253, 1318, 1390
BmtI GCTAGC 1 cut(s) 998
BmuI ACTGGG 2 cut(s) 160, 273
BpiI GAAGAC 3 cut(s) 593, 1171, 1655
BpmI CTGGAG 1 cut(s) 1007
Bpu10I CCTNAGC 1 cut(s) 1375
Bpu1102I GCTNAGC 1 cut(s) 1494
BpuEI CTTGAG 1 cut(s) 1534
BpuMI CCSGG 2 cut(s) 678, 1562
BsaAI YACGTR 1 cut(s) 1675
BsaBI GATNNNNATC 1 cut(s) 527
BsaI GGTCTC 1 cut(s) 1524
BsaJI CCNNGG 9 cut(s) 310, 481, 667, 775, 1072, 1114, 1560, 1626, 1708
BsaXI ACNNNNNCTCC 4 cut(s) 950, 980, 1573, 1603
Bsc4I CCNNNNNNNGG 8 cut(s) 329, 395, 518, 561, 1044, 1339, 1515, 1835
Bse118I RCCGGY 1 cut(s) 842
Bse1I ACTGG 5 cut(s) 166, 220, 268, 570, 885
Bse3DI GCAATG 3 cut(s) 885, 1343, 1871
Bse8I GATNNNNATC 1 cut(s) 527
BseBI CCWGG 2 cut(s) 777, 897
BseDI CCNNGG 9 cut(s) 310, 481, 667, 775, 1072, 1114, 1560, 1626, 1708
BseGI GGATG 2 cut(s) 97, 1459
BseJI GATNNNNATC 1 cut(s) 527
BseLI CCNNNNNNNGG 8 cut(s) 329, 395, 518, 561, 1044, 1339, 1515, 1835
BseMI GCAATG 3 cut(s) 885, 1343, 1871
BseMII CTCAG 3 cut(s) 134, 1389, 1535
BseNI ACTGG 5 cut(s) 166, 220, 268, 570, 885
BseXI GCAGC 6 cut(s) 33, 148, 858, 1021, 1109, 1742
BsgI GTGCAG 2 cut(s) 1108, 1250
BshFI GGCC 4 cut(s) 972, 1071, 1373, 1559
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 5 cut(s) 677, 843, 969, 1562, 1877
BslFI GGGAC 4 cut(s) 266, 1098, 1355, 1555
BslI CCNNNNNNNGG 8 cut(s) 329, 395, 518, 561, 1044, 1339, 1515, 1835
BsmAI GTCTC 2 cut(s) 982, 1524
BsmFI GGGAC 4 cut(s) 266, 1098, 1355, 1555
BsmI GAATGC 1 cut(s) 1268
BsnI GGCC 4 cut(s) 972, 1071, 1373, 1559
Bso31I GGTCTC 1 cut(s) 1524
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 8 cut(s) 319, 982, 1154, 1159, 1504, 1669, 1759, 1903
Bsp1720I GCTNAGC 1 cut(s) 1494
BspACI CCGC 5 cut(s) 504, 512, 555, 1207, 1510
BspANI GGCC 4 cut(s) 972, 1071, 1373, 1559
BspCNI CTCAG 3 cut(s) 133, 1388, 1534
BspHI TCATGA 1 cut(s) 1249
BspLI GGNNCC 2 cut(s) 1506, 1560
BspOI GCTAGC 1 cut(s) 998
BspPI GGATC 3 cut(s) 314, 1499, 1512
BspTNI GGTCTC 1 cut(s) 1524
BsrDI GCAATG 3 cut(s) 885, 1343, 1871
BsrFI RCCGGY 1 cut(s) 842
BsrI ACTGG 5 cut(s) 166, 220, 268, 570, 885
BssAI RCCGGY 1 cut(s) 842
BssECI CCNNGG 9 cut(s) 310, 481, 667, 775, 1072, 1114, 1560, 1626, 1708
BssMI GATC 8 cut(s) 319, 982, 1154, 1159, 1504, 1669, 1759, 1903
BssSI CACGAG 1 cut(s) 1499
BssT1I CCWWGG 6 cut(s) 310, 481, 1072, 1114, 1626, 1708
Bst2BI CACGAG 1 cut(s) 1499
Bst2UI CCWGG 2 cut(s) 777, 897
Bst4CI ACNGT 6 cut(s) 380, 491, 637, 1129, 1449, 1664
Bst6I CTCTTC 2 cut(s) 547, 1133
BstBAI YACGTR 1 cut(s) 1675
BstC8I GCNNGC 3 cut(s) 33, 273, 996
BstDEI CTNAG 5 cut(s) 120, 1375, 1470, 1494, 1521
BstF5I GGATG 2 cut(s) 97, 1459
BstH2I RGCGCY 1 cut(s) 339
BstHHI GCGC 2 cut(s) 31, 338
BstKTI GATC 8 cut(s) 322, 985, 1157, 1162, 1507, 1672, 1762, 1906
BstMAI GTCTC 2 cut(s) 982, 1524
BstMBI GATC 8 cut(s) 319, 982, 1154, 1159, 1504, 1669, 1759, 1903
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNI CCWGG 2 cut(s) 777, 897
BstNSI RCATGY 2 cut(s) 1606, 1897
BstSCI CCNGG 4 cut(s) 676, 775, 895, 1560
BstV1I GCAGC 6 cut(s) 33, 148, 858, 1021, 1109, 1742
BstV2I GAAGAC 3 cut(s) 593, 1171, 1655
BstX2I RGATCY 2 cut(s) 1154, 1504
BstYI RGATCY 2 cut(s) 1154, 1504
BsuI GTATCC 2 cut(s) 493, 1544
BsuRI GGCC 4 cut(s) 972, 1071, 1373, 1559
BtrI CACGTC 1 cut(s) 221
BtsCI GGATG 2 cut(s) 97, 1459
BtsI GCAGTG 2 cut(s) 31, 1415
BtsIMutI CAGTG 2 cut(s) 31, 1415
Cac8I GCNNGC 3 cut(s) 33, 273, 996
CaiI CAGNNNCTG 1 cut(s) 896
CciI TCATGA 1 cut(s) 1249
CfoI GCGC 2 cut(s) 31, 338
Cfr10I RCCGGY 1 cut(s) 842
Cfr13I GGNCC 1 cut(s) 1558
CseI GACGC 2 cut(s) 919, 1736
Csp6I GTAC 4 cut(s) 1351, 1415, 1445, 1803
CviAII CATG 9 cut(s) 301, 707, 798, 1225, 1250, 1394, 1555, 1603, 1894
CviQI GTAC 4 cut(s) 1351, 1415, 1445, 1803
DdeI CTNAG 5 cut(s) 120, 1375, 1470, 1494, 1521
DpnI GATC 8 cut(s) 321, 984, 1156, 1161, 1506, 1671, 1761, 1905
DpnII GATC 8 cut(s) 319, 982, 1154, 1159, 1504, 1669, 1759, 1903
EaeI YGGCCR 1 cut(s) 970
Eam1104I CTCTTC 2 cut(s) 547, 1133
EarI CTCTTC 2 cut(s) 547, 1133
EciI GGCGGA 1 cut(s) 544
Ecl136II GAGCTC 1 cut(s) 190
Eco130I CCWWGG 6 cut(s) 310, 481, 1072, 1114, 1626, 1708
Eco24I GRGCYC 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 1524
Eco32I GATATC 1 cut(s) 1429
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 1447
Eco72I CACGTG 1 cut(s) 1675
EcoICRI GAGCTC 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 775, 895
EcoRV GATATC 1 cut(s) 1429
EcoT14I CCWWGG 6 cut(s) 310, 481, 1072, 1114, 1626, 1708
EcoT22I ATGCAT 1 cut(s) 1282
EcoT38I GRGCYC 1 cut(s) 192
ErhI CCWWGG 6 cut(s) 310, 481, 1072, 1114, 1626, 1708
FaeI CATG 9 cut(s) 304, 710, 801, 1228, 1253, 1397, 1558, 1606, 1897
FaqI GGGAC 4 cut(s) 266, 1098, 1355, 1555
FatI CATG 9 cut(s) 300, 706, 797, 1224, 1249, 1393, 1554, 1602, 1893
FauI CCCGC 1 cut(s) 1517
FauNDI CATATG 2 cut(s) 926, 1888
FbaI TGATCA 1 cut(s) 1159
Fnu4HI GCNGC 8 cut(s) 22, 162, 512, 847, 1035, 1123, 1207, 1731
FokI GGATG 2 cut(s) 84, 1466
FriOI GRGCYC 1 cut(s) 192
Fsp4HI GCNGC 8 cut(s) 22, 162, 512, 847, 1035, 1123, 1207, 1731
FspBI CTAG 4 cut(s) 995, 1067, 1587, 1907
FspI TGCGCA 1 cut(s) 30
GlaI GCGC 2 cut(s) 30, 337
GluI GCNGC 8 cut(s) 22, 162, 512, 847, 1035, 1123, 1207, 1731
GsuI CTGGAG 1 cut(s) 1007
HaeII RGCGCY 1 cut(s) 339
HaeIII GGCC 4 cut(s) 972, 1071, 1373, 1559
HapII CCGG 5 cut(s) 677, 843, 969, 1562, 1877
HgaI GACGC 2 cut(s) 919, 1736
HhaI GCGC 2 cut(s) 31, 338
Hin1II CATG 9 cut(s) 304, 710, 801, 1228, 1253, 1397, 1558, 1606, 1897
Hin6I GCGC 2 cut(s) 29, 336
HinP1I GCGC 2 cut(s) 29, 336
HincII GTYRAC 2 cut(s) 307, 712
HindII GTYRAC 2 cut(s) 307, 712
HindIII AAGCTT 1 cut(s) 1472
HinfI GANTC 6 cut(s) 724, 809, 949, 1101, 1143, 1595
HpaII CCGG 5 cut(s) 677, 843, 969, 1562, 1877
HphI GGTGA 6 cut(s) 503, 695, 1490, 1799, 1855, 1913
Hpy166II GTNNAC 4 cut(s) 307, 712, 1415, 1803
Hpy188I TCNGA 7 cut(s) 10, 319, 954, 982, 1159, 1524, 1600
Hpy8I GTNNAC 4 cut(s) 307, 712, 1415, 1803
Hpy99I CGWCG 1 cut(s) 1664
HpyAV CCTTC 6 cut(s) 149, 174, 1056, 1391, 1571, 1638
HpyCH4III ACNGT 6 cut(s) 380, 491, 637, 1129, 1449, 1664
HpyCH4IV ACGT 5 cut(s) 220, 551, 1443, 1544, 1674
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 5 cut(s) 120, 1375, 1470, 1494, 1521
HpySE526I ACGT 5 cut(s) 220, 551, 1443, 1544, 1674
Hsp92II CATG 9 cut(s) 304, 710, 801, 1228, 1253, 1397, 1558, 1606, 1897
HspAI GCGC 2 cut(s) 29, 336
Ksp22I TGATCA 1 cut(s) 1159
Kzo9I GATC 8 cut(s) 319, 982, 1154, 1159, 1504, 1669, 1759, 1903
LmnI GCTCC 2 cut(s) 333, 370
Lsp1109I GCAGC 6 cut(s) 33, 148, 858, 1021, 1109, 1742
LweI GCATC 3 cut(s) 253, 1318, 1390
MaeI CTAG 4 cut(s) 995, 1067, 1587, 1907
MaeII ACGT 5 cut(s) 220, 551, 1443, 1544, 1674
MaeIII GTNAC 4 cut(s) 259, 547, 572, 739
MalI GATC 8 cut(s) 321, 984, 1156, 1161, 1506, 1671, 1761, 1905
MboI GATC 8 cut(s) 319, 982, 1154, 1159, 1504, 1669, 1759, 1903
MfeI CAATTG 1 cut(s) 559
MflI RGATCY 2 cut(s) 1154, 1504
MhlI GDGCHC 1 cut(s) 192
MlyI GAGTC 1 cut(s) 1095
MmeI TCCRAC 3 cut(s) 474, 1431, 1771
Mph1103I ATGCAT 1 cut(s) 1282
MroXI GAANNNNTTC 1 cut(s) 1178
MseI TTAA 6 cut(s) 438, 693, 770, 944, 1211, 1918
MslI CAYNNNNRTG 2 cut(s) 299, 1398
MspA1I CMGCKG 1 cut(s) 1733
MspI CCGG 5 cut(s) 677, 843, 969, 1562, 1877
MspR9I CCNGG 4 cut(s) 678, 777, 897, 1562
MunI CAATTG 1 cut(s) 559
Mva1269I GAATGC 1 cut(s) 1268
MvaI CCWGG 2 cut(s) 777, 897
MwoI GCNNNNNNNGC 1 cut(s) 230
NciI CCSGG 2 cut(s) 678, 1562
NdeI CATATG 2 cut(s) 926, 1888
NdeII GATC 8 cut(s) 319, 982, 1154, 1159, 1504, 1669, 1759, 1903
NheI GCTAGC 1 cut(s) 994
NlaIII CATG 9 cut(s) 304, 710, 801, 1228, 1253, 1397, 1558, 1606, 1897
NlaIV GGNNCC 2 cut(s) 1506, 1560
NmeAIII GCCGAG 1 cut(s) 532
NsbI TGCGCA 1 cut(s) 30
NsiI ATGCAT 1 cut(s) 1282
NspI RCATGY 2 cut(s) 1606, 1897
PagI TCATGA 1 cut(s) 1249
PciI ACATGT 2 cut(s) 1602, 1893
PcsI WCGNNNNNNNCGW 1 cut(s) 1497
PctI GAATGC 1 cut(s) 1268
PdmI GAANNNNTTC 1 cut(s) 1178
PfeI GAWTC 5 cut(s) 724, 809, 949, 1143, 1595
PkrI GCNGC 8 cut(s) 23, 163, 513, 848, 1036, 1124, 1208, 1732
PleI GAGTC 1 cut(s) 1095
PmaCI CACGTG 1 cut(s) 1675
PmlI CACGTG 1 cut(s) 1675
PpsI GAGTC 1 cut(s) 1095
Ppu21I YACGTR 1 cut(s) 1675
PscI ACATGT 2 cut(s) 1602, 1893
Psp124BI GAGCTC 1 cut(s) 192
Psp6I CCWGG 2 cut(s) 775, 895
PspCI CACGTG 1 cut(s) 1675
PspGI CCWGG 2 cut(s) 775, 895
PspN4I GGNNCC 2 cut(s) 1506, 1560
PspPI GGNCC 1 cut(s) 1558
PstNI CAGNNNCTG 1 cut(s) 896
PsuI RGATCY 2 cut(s) 1154, 1504
PvuII CAGCTG 1 cut(s) 1733
RsaI GTAC 4 cut(s) 1352, 1416, 1446, 1804
RsaNI GTAC 4 cut(s) 1351, 1415, 1445, 1803
RseI CAYNNNNRTG 2 cut(s) 299, 1398
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 6 cut(s) 438, 693, 770, 944, 1211, 1918
SatI GCNGC 8 cut(s) 22, 162, 512, 847, 1035, 1123, 1207, 1731
Sau3AI GATC 8 cut(s) 319, 982, 1154, 1159, 1504, 1669, 1759, 1903
Sau96I GGNCC 1 cut(s) 1558
SchI GAGTC 1 cut(s) 1095
ScrFI CCNGG 4 cut(s) 678, 777, 897, 1562
SduI GDGCHC 1 cut(s) 192
SfaNI GCATC 3 cut(s) 253, 1318, 1390
SmiMI CAYNNNNRTG 2 cut(s) 299, 1398
SmlI CTYRAG 1 cut(s) 1513
SmoI CTYRAG 1 cut(s) 1513
SsiI CCGC 5 cut(s) 504, 512, 555, 1207, 1510
SspI AATATT 2 cut(s) 52, 1720
SspMI CTAG 4 cut(s) 995, 1067, 1587, 1907
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 4 cut(s) 676, 775, 895, 1560
StyI CCWWGG 6 cut(s) 310, 481, 1072, 1114, 1626, 1708
TaaI ACNGT 6 cut(s) 380, 491, 637, 1129, 1449, 1664
TaiI ACGT 5 cut(s) 223, 554, 1446, 1547, 1677
TaqI TCGA 8 cut(s) 126, 210, 474, 651, 812, 1219, 1302, 1762
TatI WGTACW 2 cut(s) 1414, 1802
TauI GCSGC 2 cut(s) 514, 1209
TfiI GAWTC 5 cut(s) 724, 809, 949, 1143, 1595
Tru1I TTAA 6 cut(s) 438, 693, 770, 944, 1211, 1918
Tru9I TTAA 6 cut(s) 438, 693, 770, 944, 1211, 1918
TscAI CASTG 2 cut(s) 31, 1415
TseI GCWGC 6 cut(s) 21, 161, 846, 1034, 1122, 1730
TspRI CASTG 2 cut(s) 31, 1415
XbaI TCTAGA 1 cut(s) 1906
XceI RCATGY 2 cut(s) 1606, 1897
XcmI CCANNNNNNNNNTGG 2 cut(s) 137, 1686
XmnI GAANNNNTTC 1 cut(s) 1178
XspI CTAG 4 cut(s) 995, 1067, 1587, 1907
Zsp2I ATGCAT 1 cut(s) 1282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.