RchiOBHm_Chr2g0111821

Lectin-domain containing receptor kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
23411487 .. 23411864
378 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48539

Sequence Viewer

Length: 378 bp
ATGACAGTAGCAGTGAAGAAAATTTTAAACAAGTCTGGTAAGGGAAGAAAGGAGTACATAACAGAGGTGAATCTCATTAGTAGCTTGAGGCACCCAAATCTGGTGCAACTCAAAGGATGGTGCCATGACGGAGGCCAGACTACATTCCTTCTTGTTTACGAGTTCATGTCAGAGGGTAGCCTCGATTCTCACCTCTTTAGGGCGAGGCCTGCTCTAACCTGGAGTGTGAGATACAAGATATATAAGGGACTGGCCCTAGCATTGCTTTATCTCCATGATGTATATCTCCGCTTTGGGACAAGCTATGGTACTGTGATGTTGATGGTGTCCTCGCTGCGATTAAAGGCTATCGAGTTCCATTCTACCTGTGGGGTGTAG

Protein Analysis

125

Amino Acids

14.19

Weight (kDa)

9.7

Isoelectric Point (pI)

31.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 2 - 93 3.2e-14 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 2 - 93 1.8e-11 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10530 AT5G65600
fragaria_vesca FvH4_1g17770 FvH4_1g19171 FvH4_1g19180 FvH4_1g19922 FvH4_1g19923 FvH4_1g19940 FvH4_1g19950 FvH4_3g19030 FvH4_3g19040 FvH4_3g19350 FvH4_3g19361 FvH4_3g19370 FvH4_3g19372 FvH4_3g19390 FvH4_3g19390 FvH4_3g19400 FvH4_3g19400 FvH4_3g23100 FvH4_3g32500 FvH4_3g39140 FvH4_4g12891 FvH4_4g12900 FvH4_5g13890 FvH4_6g23490 FvH4_7g14930 FvH4_7g14950 FvH4_7g15082 FvH4_7g16980
malus_domestica MD01G1043400.v1.1 MD01G1043500.v1.1 MD03G1232800.v1.1 MD03G1232900.v1.1 MD03G1233000.v1.1 MD03G1233100.v1.1 MD03G1233200.v1.1 MD03G1233300.v1.1 MD03G1233600.v1.1 MD03G1233700.v1.1 MD03G1233900.v1.1 MD03G1234100.v1.1 MD03G1234300.v1.1 MD03G1234400.v1.1 MD03G1234500.v1.1 MD03G1234600.v1.1 MD08G1053200.v1.1 MD08G1053400.v1.1 MD08G1053500.v1.1 MD08G1053600.v1.1 MD08G1053800.v1.1 MD08G1053900.v1.1 MD08G1054000.v1.1 MD08G1054100.v1.1 MD08G1054200.v1.1 MD08G1054400.v1.1 MD08G1054600.v1.1 MD09G1175200.v1.1 MD09G1289800.v1.1 MD09G1289900.v1.1 MD11G1253600.v1.1 MD11G1254300.v1.1 MD11G1254500.v1.1 MD11G1254900.v1.1 MD11G1255100.v1.1 MD15G1042500.v1.1 MD15G1053100.v1.1 MD15G1053200.v1.1 MD15G1307500.v1.1
prunus_persica Prupe.1G157800_v2.0.a1 Prupe.1G395700_v2.0.a1 Prupe.4G174600_v2.0.a1 Prupe.4G174800_v2.0.a1 Prupe.4G174900_v2.0.a1 Prupe.4G175000_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175300_v2.0.a1 Prupe.4G175400_v2.0.a1 Prupe.4G175500_v2.0.a1 Prupe.4G175600_v2.0.a1 Prupe.4G175700_v2.0.a1 Prupe.4G241200_v2.0.a1 Prupe.6G208500_v2.0.a1 Prupe.6G208700_v2.0.a1 Prupe.6G208800_v2.0.a1 Prupe.8G117500_v2.0.a1 Prupe.I004200_v2.0.a1 Prupe.I004300_v2.0.a1
pyrus_communis pycom03g18010 pycom03g18050 pycom03g18070 pycom03g18100 pycom08g04440 pycom09g19760 pycom11g22500 pycom11g22510 pycom11g22520
rosa_chinensis RchiOBHm_Chr1g0318811 RchiOBHm_Chr1g0329471 RchiOBHm_Chr1g0340841 RchiOBHm_Chr1g0340931 RchiOBHm_Chr1g0356861 RchiOBHm_Chr1g0357251 RchiOBHm_Chr1g0357261 RchiOBHm_Chr1g0357321 RchiOBHm_Chr1g0360231 RchiOBHm_Chr1g0365521 RchiOBHm_Chr1g0365571 RchiOBHm_Chr1g0365581 RchiOBHm_Chr2g0108101 RchiOBHm_Chr2g0108131 RchiOBHm_Chr2g0108161 RchiOBHm_Chr2g0108191 RchiOBHm_Chr2g0108201 RchiOBHm_Chr2g0110211 RchiOBHm_Chr2g0110221 RchiOBHm_Chr2g0110261 RchiOBHm_Chr2g0110301 RchiOBHm_Chr2g0111801 RchiOBHm_Chr2g0111821 RchiOBHm_Chr2g0128081 RchiOBHm_Chr2g0151141 RchiOBHm_Chr3g0469441 RchiOBHm_Chr3g0481491 RchiOBHm_Chr4g0399611 RchiOBHm_Chr4g0414891 RchiOBHm_Chr5g0031941 RchiOBHm_Chr5g0032011 RchiOBHm_Chr5g0032051 RchiOBHm_Chr5g0032101 RchiOBHm_Chr5g0032421 RchiOBHm_Chr5g0032461 RchiOBHm_Chr5g0032481 RchiOBHm_Chr5g0032541 RchiOBHm_Chr5g0032571 RchiOBHm_Chr5g0032591 RchiOBHm_Chr5g0032631 RchiOBHm_Chr5g0037251 RchiOBHm_Chr5g0037271 RchiOBHm_Chr5g0037281 RchiOBHm_Chr5g0037291 RchiOBHm_Chr5g0040701 RchiOBHm_Chr5g0040731 RchiOBHm_Chr5g0059491 RchiOBHm_Chr6g0257841 RchiOBHm_Chr6g0274701 RchiOBHm_Chr7g0212711
rosa_laevigata RLG00000002585 RLG00000002586 RLG00000008111 RLG00000009258 RLG00000012123 RLG00000014148 RLG00000014734 RLG00000017640 RLG00000017642 RLG00000017645 RLG00000017646 RLG00000017795 RLG00000017796 RLG00000017925 RLG00000017926 RLG00000020068 RLG00000023393 RLG00000024495 RLG00000028027 RLG00000028033 RLG00000028034 RLG00000028035 RLG00000028037 RLG00000028040 RLG00000028041 RLG00000028072 RLG00000028159 RLG00000028160 RLG00000033360 RLG00000033399 RLG00000033401 RLG00000033402 RLG00000033403 RLG00000033404 RLG00000033405 RLG00000033407 RLG00000033408 RLG00000033411 RLG00000033414 RLG00000033470 RLG00000033769 RLG00000033772 RLG00000033997
rosa_multiflora Rmu_co8044118.1_g000001 Rmu_co8077552.1_g000001 Rmu_co8082100.1_g000001 Rmu_co8171646.1_g000001 Rmu_co8225604.1_g000001 Rmu_co8285705.1_g000001 Rmu_co8296369.1_g000001 Rmu_co8319685.1_g000001 Rmu_co8326977.1_g000001 Rmu_co8421957.1_g000001 Rmu_co8457997.1_g000001 Rmu_co8464379.1_g000001 Rmu_co8466539.1_g000001 Rmu_sc0000055.1_g000016 Rmu_sc0000064.1_g000032 Rmu_sc0000316.1_g000004 Rmu_sc0000316.1_g000010 Rmu_sc0000316.1_g000011 Rmu_sc0000394.1_g000016 Rmu_sc0001017.1_g000022 Rmu_sc0001484.1_g000003 Rmu_sc0002530.1_g000028 Rmu_sc0002530.1_g000031 Rmu_sc0002530.1_g000035 Rmu_sc0002587.1_g000043 Rmu_sc0002719.1_g000003 Rmu_sc0002719.1_g000005 Rmu_sc0002964.1_g000011 Rmu_sc0003031.1_g000001 Rmu_sc0003031.1_g000014 Rmu_sc0003031.1_g000027 Rmu_sc0003031.1_g000053 Rmu_sc0003552.1_g000003 Rmu_sc0003656.1_g000001 Rmu_sc0003916.1_g000001 Rmu_sc0003916.1_g000003 Rmu_sc0004100.1_g000001 Rmu_sc0004129.1_g000008 Rmu_sc0004365.1_g000001 Rmu_sc0004365.1_g000002 Rmu_sc0004542.1_g000017 Rmu_sc0004792.1_g000029 Rmu_sc0004792.1_g000032 Rmu_sc0004792.1_g000034 Rmu_sc0004792.1_g000035 Rmu_sc0004927.1_g000003 Rmu_sc0004927.1_g000005 Rmu_sc0004927.1_g000013 Rmu_sc0004927.1_g000023 Rmu_sc0005002.1_g000009 Rmu_sc0005002.1_g000028 Rmu_sc0005278.1_g000024 Rmu_sc0005278.1_g000025 Rmu_sc0005375.1_g000022 Rmu_sc0005728.1_g000005 Rmu_sc0005728.1_g000007 Rmu_sc0005770.1_g000017 Rmu_sc0005808.1_g000002 Rmu_sc0005808.1_g000004 Rmu_sc0006798.1_g000002 Rmu_sc0006798.1_g000003 Rmu_sc0006798.1_g000006 Rmu_sc0006798.1_g000007 Rmu_sc0006798.1_g000011 Rmu_sc0007406.1_g000014 Rmu_sc0007406.1_g000025 Rmu_sc0007965.1_g000011 Rmu_sc0009840.1_g000001 Rmu_sc0011812.1_g000005 Rmu_sc0015491.1_g000002 Rmu_sc0019008.1_g000001 Rmu_sc0019103.1_g000001 Rmu_sc0020236.1_g000002 Rmu_sc0021706.1_g000002 Rmu_sc0022958.1_g000008 Rmu_sc0026238.1_g000001 Rmu_sc0032550.1_g000001 Rmu_sc0034983.1_g000001 Rmu_sc0039890.1_g000002 Rmu_sc0041272.1_g000001 Rmu_sc0041373.1_g000001 Rmu_ssc0000100.1_g000012 Rmu_ssc0000100.1_g000017 Rmu_ssc0000100.1_g000031 Rmu_ssc0000100.1_g000033 Rmu_ssc0000386.1_g000042
rosa_roxburghii Rroxscaffold_1G00039940 Rroxscaffold_1G00039970 Rroxscaffold_1G00039980 Rroxscaffold_1G00043650 Rroxscaffold_1G00043700 Rroxscaffold_1G00047420 Rroxscaffold_1G00047430 Rroxscaffold_1G00047450 Rroxscaffold_1G00047470 Rroxscaffold_1G00047480 Rroxscaffold_1G00047500 Rroxscaffold_1G00047510 Rroxscaffold_1G00047520 Rroxscaffold_1G00047540 Rroxscaffold_1G00047570 Rroxscaffold_1G00047690 Rroxscaffold_1G00047720 Rroxscaffold_1G00047730 Rroxscaffold_1G00047740 Rroxscaffold_1G00047880 Rroxscaffold_1G00047900 Rroxscaffold_1G00047910 Rroxscaffold_1G00047920 Rroxscaffold_1G00047940 Rroxscaffold_1G00047950 Rroxscaffold_1G00047970 Rroxscaffold_1G00047980 Rroxscaffold_1G00048000 Rroxscaffold_2G00132060 Rroxscaffold_2G00132100 Rroxscaffold_2G00132110 Rroxscaffold_2G00133580 Rroxscaffold_2G00133630 Rroxscaffold_2G00133640 Rroxscaffold_2G00135480 Rroxscaffold_2G00135490 Rroxscaffold_2G00135530 Rroxscaffold_2G00135600 Rroxscaffold_2G00135630 Rroxscaffold_4G00291170 Rroxscaffold_4G00296260 Rroxscaffold_4G00296270 Rroxscaffold_4G00298840 Rroxscaffold_4G00298890 Rroxscaffold_4G00298900 Rroxscaffold_4G00298930 Rroxscaffold_4G00298960 Rroxscaffold_4G00299220 Rroxscaffold_5G00344530 Rroxscaffold_5G00353770 Rroxscaffold_5G00358640 Rroxscaffold_7G00202240 Rroxscaffold_7G00209000
rosa_rugosa Rorug01G0218600 Rorug01G0251800 Rorug01G0255100 Rorug01G0255200 Rorug01G0255500 Rorug01G0255700 Rorug01G0256400 Rorug01G0276200 Rorug01G0322400 Rorug02G0150200 Rorug02G0150300 Rorug02G0150400 Rorug02G0150700 Rorug02G0150800 Rorug02G0150900 Rorug02G0151000 Rorug02G0151100 Rorug02G0166000 Rorug02G0166100.1 Rorug02G0176300 Rorug02G0176400 Rorug02G0176700 Rorug03G0192200 Rorug03G0193100 Rorug04G0017700 Rorug04G0331400 Rorug05G0129400 Rorug05G0131900 Rorug05G0132200 Rorug05G0132300 Rorug05G0132300 Rorug05G0132400 Rorug05G0132500 Rorug05G0132600 Rorug05G0132700 Rorug05G0132800 Rorug05G0132900 Rorug05G0164000 Rorug05G0164000 Rorug05G0186700 Rorug05G0187000 Rorug05G0323000 Rorug05G0323000 Rorug05G0567400 Rorug07G0136000 Rorug07G0159500
rosa_samantha Rh1CG249900 Rh1CG253000 Rh1DG261400 Rh1DG264400 Rh1DG264800 Rh1DG264900 Rh1DG265600 Rh2AG218700 Rh2AG228900 Rh2AG229000 Rh2BG227800 Rh2BG241900 Rh2BG297700 Rh2DG224600 Rh2DG225000 Rh2DG236900 Rh3AG243400 Rh3CG273500 Rh4DG088000 Rh5CG246800 Rh5CG247800 Rh5CG252000 Rh5CG252100 Rh5CG252200 Rh5CG252500 Rh5CG252600 Rh5CG252800 Rh5CG253100 Rh5CG253200 Rh5CG253300 Rh5CG253900 Rh5CG254100 Rh5CG288700 Rh5CG288800 Rh5CG309700 Rh5CG309800 Rh5DG415100 Rh6BG078900 Rh6BG142900 Rh6CG073600 Rh6CG139500 Rh7CG210700
rosa_wichuraiana Rw0G015410 Rw1G023790 Rw1G023810 Rw1G023830 Rw1G023890 Rw1G023960 Rw1G024030 Rw1G024060 Rw1G024080 Rw1G024100 Rw2G015830 Rw2G015870 Rw2G015890 Rw2G016830 Rw2G016870 Rw2G016890 Rw2G017700 Rw2G017710 Rw2G017730 Rw3G021740 Rw3G026100 Rw4G007870 Rw5G020370 Rw5G020560 Rw5G020590 Rw5G020610 Rw5G020620 Rw5G020640 Rw5G020660 Rw5G023440 Rw5G023480 Rw5G025580 Rw5G025610 Rw5G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 90, 120
AciI CCGC 1 cut(s) 289
AcsI RAATTY 1 cut(s) 21
AfaI GTAC 2 cut(s) 56, 310
AfiI CCNNNNNNNGG 2 cut(s) 100, 199
AjnI CCWGG 1 cut(s) 218
AluBI AGCT 2 cut(s) 84, 303
AluI AGCT 2 cut(s) 84, 303
AoxI GGCC 3 cut(s) 133, 206, 252
ApeKI GCWGC 1 cut(s) 334
ApoI RAATTY 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 253
AsuHPI GGTGA 2 cut(s) 79, 182
BanI GGYRCC 2 cut(s) 90, 120
BbvI GCAGC 1 cut(s) 321
BccI CCATC 2 cut(s) 111, 316
BciT130I CCWGG 1 cut(s) 220
BfaI CTAG 1 cut(s) 257
BisI GCNGC 1 cut(s) 335
BlsI GCNGC 1 cut(s) 336
Bme1390I CCNGG 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 253
BmiI GGNNCC 2 cut(s) 92, 122
BmrFI CCNGG 1 cut(s) 220
BplI GAGNNNNNCTC 2 cut(s) 196, 228
BpmI CTGGAG 1 cut(s) 241
BpuEI CTTGAG 1 cut(s) 106
BsaBI GATNNNNATC 1 cut(s) 282
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 199
Bse1I ACTGG 1 cut(s) 255
Bse3DI GCAATG 1 cut(s) 260
Bse8I GATNNNNATC 1 cut(s) 282
BseBI CCWGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 122
BseJI GATNNNNATC 1 cut(s) 282
BseLI CCNNNNNNNGG 2 cut(s) 100, 199
BseMI GCAATG 1 cut(s) 260
BseNI ACTGG 1 cut(s) 255
BseXI GCAGC 1 cut(s) 321
BshFI GGCC 3 cut(s) 135, 208, 254
BshNI GGYRCC 2 cut(s) 90, 120
BslFI GGGAC 2 cut(s) 261, 310
BslI CCNNNNNNNGG 2 cut(s) 100, 199
BsmFI GGGAC 2 cut(s) 261, 310
BsnI GGCC 3 cut(s) 135, 208, 254
BspACI CCGC 1 cut(s) 289
BspANI GGCC 3 cut(s) 135, 208, 254
BspLI GGNNCC 2 cut(s) 92, 122
BspT107I GGYRCC 2 cut(s) 90, 120
BsrDI GCAATG 1 cut(s) 260
BsrI ACTGG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 220
Bst4CI ACNGT 2 cut(s) 7, 313
BstC8I GCNNGC 1 cut(s) 210
BstF5I GGATG 1 cut(s) 122
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 220
BstSCI CCNGG 1 cut(s) 218
BstV1I GCAGC 1 cut(s) 321
BsuRI GGCC 3 cut(s) 135, 208, 254
BtsCI GGATG 1 cut(s) 122
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
Cac8I GCNNGC 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 253
Csp6I GTAC 2 cut(s) 55, 309
CviAII CATG 3 cut(s) 125, 166, 275
CviJI RGCY 7 cut(s) 84, 135, 180, 208, 254, 303, 347
CviKI_1 RGCY 7 cut(s) 84, 135, 180, 208, 254, 303, 347
CviQI GTAC 2 cut(s) 55, 309
DraI TTTAAA 1 cut(s) 27
Eco147I AGGCCT 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 218
FaeI CATG 3 cut(s) 128, 169, 278
FaiI YATR 8 cut(s) 59, 126, 167, 241, 243, 276, 283, 306
FaqI GGGAC 2 cut(s) 261, 310
FatI CATG 3 cut(s) 124, 165, 274
Fnu4HI GCNGC 1 cut(s) 335
FokI GGATG 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 335
FspBI CTAG 1 cut(s) 257
GluI GCNGC 1 cut(s) 335
GsuI CTGGAG 1 cut(s) 241
HaeIII GGCC 3 cut(s) 135, 208, 254
Hin1II CATG 3 cut(s) 128, 169, 278
HinfI GANTC 2 cut(s) 70, 185
HphI GGTGA 2 cut(s) 79, 182
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 172
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 2 cut(s) 7, 313
HpyCH4V TGCA 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
Hsp92II CATG 3 cut(s) 128, 169, 278
LpnPI CCDG 7 cut(s) 21, 86, 149, 205, 222, 232, 236
Lsp1109I GCAGC 1 cut(s) 321
MaeI CTAG 1 cut(s) 257
MboII GAAGA 2 cut(s) 28, 57
MluCI AATT 1 cut(s) 21
MnlI CCTC 8 cut(s) 58, 81, 125, 166, 191, 198, 203, 340
MseI TTAA 2 cut(s) 26, 341
MspR9I CCNGG 1 cut(s) 220
MvaI CCWGG 1 cut(s) 220
MwoI GCNNNNNNNGC 1 cut(s) 209
NlaIII CATG 3 cut(s) 128, 169, 278
NlaIV GGNNCC 2 cut(s) 92, 122
PceI AGGCCT 1 cut(s) 208
PfeI GAWTC 2 cut(s) 70, 185
PkrI GCNGC 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 218
PspGI CCWGG 1 cut(s) 218
PspN4I GGNNCC 2 cut(s) 92, 122
PspPI GGNCC 1 cut(s) 253
RsaI GTAC 2 cut(s) 56, 310
RsaNI GTAC 2 cut(s) 55, 309
SaqAI TTAA 2 cut(s) 26, 341
SatI GCNGC 1 cut(s) 335
Sau96I GGNCC 1 cut(s) 253
ScrFI CCNGG 1 cut(s) 220
SetI ASST 6 cut(s) 69, 86, 195, 221, 305, 368
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
Sse9I AATT 1 cut(s) 21
SseBI AGGCCT 1 cut(s) 208
SsiI CCGC 1 cut(s) 289
SspMI CTAG 1 cut(s) 257
StuI AGGCCT 1 cut(s) 208
StyD4I CCNGG 1 cut(s) 218
TaaI ACNGT 2 cut(s) 7, 313
TaqI TCGA 2 cut(s) 183, 351
TasI AATT 1 cut(s) 21
TatI WGTACW 1 cut(s) 54
TfiI GAWTC 2 cut(s) 70, 185
Tru1I TTAA 2 cut(s) 26, 341
Tru9I TTAA 2 cut(s) 26, 341
TscAI CASTG 1 cut(s) 18
TseI GCWGC 1 cut(s) 334
TspDTI ATGAA 1 cut(s) 154
TspGWI ACGGA 1 cut(s) 144
TspRI CASTG 1 cut(s) 18
XapI RAATTY 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 365
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.