Rroxscaffold_2G00135530

L-type lectin-domain containing receptor kinase IX.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000038
Physical Location & Seq
Forward (+)
73110083 .. 73112089
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00135530.1

Sequence Viewer

Length: 1941 bp
ATGTCTCTACCAGTGCTGGCAACTCTTAGCTTTCACTTCATTTTCATCAATTTTCTCCTTCCCTTTTCCCACCAACTTTCCTTCAATATCAATAAGTTTAATCAAGGTGGAATTAATATTCTCTACGAAGGTGATGCTGCGCCTTCTTATTTACTAGGTATGGAAGTGATTGAGATTAACACAGACACGGTTTTCCGTGTCGGCAGGGCTACCTATGCCGAGCCTTTCCACTTGTGGCAAGGTTCACTTGCTGCAGACTTCACTACTAACTTCTCTTTCATTGTGGACACTGTTAACAGAACCCTAGGCCAGTTTGCTGCTGGGTTTGTCTTCTTCCTTGCTCCGGTTCACTTTCCGATTCCACCCAACTCTGCTGGTTCTGATCTAGGATTGTATAACTCCACCACTCGTTTTGCCTCCCAAAACCAACTTGTAACGGTTGAGTTCGACACTTTCTCGAAGCCATGGGATCCACCAGGCCCACACATTGGGATCAACAACCAGACTATCTCCTCAGTTGTTTATGCCAGTTGGGATCCTATCCTCCACAGTGGGAAAGAGGACCGAGCACGTATTACTTATAATGCTACCACCAACAACCTCAGTGTGTTTTGGACCTACGACGGAGGCCCGAACCTTGAACTTAATAGTTATGTGCCAAACTCTTCCCTTTCCATCCTTATTGACCTAAGAAATGCTCTTCCTGAGTGGGTTACAATTGGTTTTTCATCTGCTACAGGCCTTTTCTCGGAGCGCCATTTTATAAGTTCATGGGAATTCAGTTCTGATTTGGATACTGAAGATATCGTAAGAAAGAAAAAGAAGAAGAGGATAGTCATAAAGATTGGGGTCGTTGCAGTAGTTCTTTTCTTCATTTTGATGCTGGGTGTGGCCATATATTGGTGGGTGGTAATAAGGAAGCGGATGAAGAGGACTCGTGGAGATGGAAATGAGCTGAATGACTCCTCTAGTGTTGCATTGTCTCCCATAAATTCAAATCTTCAGATGCTAGCCTTGCCAAGACAATTTACTTACCAAGAACTAGTTGCAGCCACCAATGGCTTCGCAAATGACAGAAGGCTAGGCGAGGGAGGATCAGGACAAGTTTACGAAGGAATCATACAAGATCTAGGATGTGTAGTTGCTGTGAAGAGAATCTTTGCACAATCCGACAAGCACTATGAGAAAATCTTCATCAACGAAGTCAAGATCATAAGCCGCATAATACATAAAAACTTGGTTAGCCTTGACACGCATCTATTTGGCCCTAGAGCAACTTTACAATGGGAGTTTAGGTATAGAATAGCTCTAGGCTTGGCCTCGGCGCTTCATTATCTACATGAGGATGCAGAGCAGTGTGTCCTTCATAGGGACATCAAATCAGCTAACGTTTTGTTGGACAACGATTTTAGCACTAAACTTGGTGATTTTGGGATTGCTAAGTTTGTGGATCCGCGGTTAAGGTCTCAGACTACCGGGGTGGTAGGGACTTTTGGATACATGGCTCCAGAATATGTTATTGAAGGGAGGGCAAACAAAGAATCAGACATGTTTAGCTTTGGAGTTGTGGCCTTGGAAATTGCTTGTGGAAGAAGGACATACCACGACGGAGAATTCCACTTACCGCTTTATAGGTGGGTTTGGCATTTATACCTTGCAGGAAACTTACTGGATGCAGCTGATGAGAGATTGGGTGTGGATTTTGATCAAAATGAAATGGAATGCTTGTTAATTGTTGGATTATGGTGCACTCACCCCAACAACAAAGAAAGGCCAAAAGCAGGACAAGTAATTAAAGTTCTCCAACTTGAAGCACCATTGCCAAAACTTCCACATATCATGCCTGATTACCCAATGTCTCAACCCCAACAACAAGCTCAATGTGGCTCCTCTCAGTCTCAGTTATTCTTAACTTCTACTTTCAATGCTATGGGTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

646

Amino Acids

72.59

Weight (kDa)

6.23

Isoelectric Point (pI)

40.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 26 - 274 3.3e-58 Legume lectin domain
Pkinase PF00069 356 - 416 7.8e-08 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 416 - 536 9.2e-20 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 434 - 536 1.5e-24 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10530 AT5G65600
fragaria_vesca FvH4_1g17770 FvH4_1g19171 FvH4_1g19180 FvH4_1g19922 FvH4_1g19923 FvH4_1g19940 FvH4_1g19950 FvH4_3g19030 FvH4_3g19040 FvH4_3g19350 FvH4_3g19361 FvH4_3g19370 FvH4_3g19372 FvH4_3g19390 FvH4_3g19390 FvH4_3g19400 FvH4_3g19400 FvH4_3g23100 FvH4_3g32500 FvH4_3g39140 FvH4_4g12891 FvH4_4g12900 FvH4_5g13890 FvH4_6g23490 FvH4_7g14930 FvH4_7g14950 FvH4_7g15082 FvH4_7g16980
malus_domestica MD01G1043400.v1.1 MD01G1043500.v1.1 MD03G1232800.v1.1 MD03G1232900.v1.1 MD03G1233000.v1.1 MD03G1233100.v1.1 MD03G1233200.v1.1 MD03G1233300.v1.1 MD03G1233600.v1.1 MD03G1233700.v1.1 MD03G1233900.v1.1 MD03G1234100.v1.1 MD03G1234300.v1.1 MD03G1234400.v1.1 MD03G1234500.v1.1 MD03G1234600.v1.1 MD08G1053200.v1.1 MD08G1053400.v1.1 MD08G1053500.v1.1 MD08G1053600.v1.1 MD08G1053800.v1.1 MD08G1053900.v1.1 MD08G1054000.v1.1 MD08G1054100.v1.1 MD08G1054200.v1.1 MD08G1054400.v1.1 MD08G1054600.v1.1 MD09G1175200.v1.1 MD09G1289800.v1.1 MD09G1289900.v1.1 MD11G1253600.v1.1 MD11G1254300.v1.1 MD11G1254500.v1.1 MD11G1254900.v1.1 MD11G1255100.v1.1 MD15G1042500.v1.1 MD15G1053100.v1.1 MD15G1053200.v1.1 MD15G1307500.v1.1
prunus_persica Prupe.1G157800_v2.0.a1 Prupe.1G395700_v2.0.a1 Prupe.4G174600_v2.0.a1 Prupe.4G174800_v2.0.a1 Prupe.4G174900_v2.0.a1 Prupe.4G175000_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175300_v2.0.a1 Prupe.4G175400_v2.0.a1 Prupe.4G175500_v2.0.a1 Prupe.4G175600_v2.0.a1 Prupe.4G175700_v2.0.a1 Prupe.4G241200_v2.0.a1 Prupe.6G208500_v2.0.a1 Prupe.6G208700_v2.0.a1 Prupe.6G208800_v2.0.a1 Prupe.8G117500_v2.0.a1 Prupe.I004200_v2.0.a1 Prupe.I004300_v2.0.a1
pyrus_communis pycom03g18010 pycom03g18050 pycom03g18070 pycom03g18100 pycom08g04440 pycom09g19760 pycom11g22500 pycom11g22510 pycom11g22520
rosa_chinensis RchiOBHm_Chr1g0318811 RchiOBHm_Chr1g0329471 RchiOBHm_Chr1g0340841 RchiOBHm_Chr1g0340931 RchiOBHm_Chr1g0356861 RchiOBHm_Chr1g0357251 RchiOBHm_Chr1g0357261 RchiOBHm_Chr1g0357321 RchiOBHm_Chr1g0360231 RchiOBHm_Chr1g0365521 RchiOBHm_Chr1g0365571 RchiOBHm_Chr1g0365581 RchiOBHm_Chr2g0108101 RchiOBHm_Chr2g0108131 RchiOBHm_Chr2g0108161 RchiOBHm_Chr2g0108191 RchiOBHm_Chr2g0108201 RchiOBHm_Chr2g0110211 RchiOBHm_Chr2g0110221 RchiOBHm_Chr2g0110261 RchiOBHm_Chr2g0110301 RchiOBHm_Chr2g0111801 RchiOBHm_Chr2g0111821 RchiOBHm_Chr2g0128081 RchiOBHm_Chr2g0151141 RchiOBHm_Chr3g0469441 RchiOBHm_Chr3g0481491 RchiOBHm_Chr4g0399611 RchiOBHm_Chr4g0414891 RchiOBHm_Chr5g0031941 RchiOBHm_Chr5g0032011 RchiOBHm_Chr5g0032051 RchiOBHm_Chr5g0032101 RchiOBHm_Chr5g0032421 RchiOBHm_Chr5g0032461 RchiOBHm_Chr5g0032481 RchiOBHm_Chr5g0032541 RchiOBHm_Chr5g0032571 RchiOBHm_Chr5g0032591 RchiOBHm_Chr5g0032631 RchiOBHm_Chr5g0037251 RchiOBHm_Chr5g0037271 RchiOBHm_Chr5g0037281 RchiOBHm_Chr5g0037291 RchiOBHm_Chr5g0040701 RchiOBHm_Chr5g0040731 RchiOBHm_Chr5g0059491 RchiOBHm_Chr6g0257841 RchiOBHm_Chr6g0274701 RchiOBHm_Chr7g0212711
rosa_laevigata RLG00000002585 RLG00000002586 RLG00000008111 RLG00000009258 RLG00000012123 RLG00000014148 RLG00000014734 RLG00000017640 RLG00000017642 RLG00000017645 RLG00000017646 RLG00000017795 RLG00000017796 RLG00000017925 RLG00000017926 RLG00000020068 RLG00000023393 RLG00000024495 RLG00000028027 RLG00000028033 RLG00000028034 RLG00000028035 RLG00000028037 RLG00000028040 RLG00000028041 RLG00000028072 RLG00000028159 RLG00000028160 RLG00000033360 RLG00000033399 RLG00000033401 RLG00000033402 RLG00000033403 RLG00000033404 RLG00000033405 RLG00000033407 RLG00000033408 RLG00000033411 RLG00000033414 RLG00000033470 RLG00000033769 RLG00000033772 RLG00000033997
rosa_multiflora Rmu_co8044118.1_g000001 Rmu_co8077552.1_g000001 Rmu_co8082100.1_g000001 Rmu_co8171646.1_g000001 Rmu_co8225604.1_g000001 Rmu_co8285705.1_g000001 Rmu_co8296369.1_g000001 Rmu_co8319685.1_g000001 Rmu_co8326977.1_g000001 Rmu_co8421957.1_g000001 Rmu_co8457997.1_g000001 Rmu_co8464379.1_g000001 Rmu_co8466539.1_g000001 Rmu_sc0000055.1_g000016 Rmu_sc0000064.1_g000032 Rmu_sc0000316.1_g000004 Rmu_sc0000316.1_g000010 Rmu_sc0000316.1_g000011 Rmu_sc0000394.1_g000016 Rmu_sc0001017.1_g000022 Rmu_sc0001484.1_g000003 Rmu_sc0002530.1_g000028 Rmu_sc0002530.1_g000031 Rmu_sc0002530.1_g000035 Rmu_sc0002587.1_g000043 Rmu_sc0002719.1_g000003 Rmu_sc0002719.1_g000005 Rmu_sc0002964.1_g000011 Rmu_sc0003031.1_g000001 Rmu_sc0003031.1_g000014 Rmu_sc0003031.1_g000027 Rmu_sc0003031.1_g000053 Rmu_sc0003552.1_g000003 Rmu_sc0003656.1_g000001 Rmu_sc0003916.1_g000001 Rmu_sc0003916.1_g000003 Rmu_sc0004100.1_g000001 Rmu_sc0004129.1_g000008 Rmu_sc0004365.1_g000001 Rmu_sc0004365.1_g000002 Rmu_sc0004542.1_g000017 Rmu_sc0004792.1_g000029 Rmu_sc0004792.1_g000032 Rmu_sc0004792.1_g000034 Rmu_sc0004792.1_g000035 Rmu_sc0004927.1_g000003 Rmu_sc0004927.1_g000005 Rmu_sc0004927.1_g000013 Rmu_sc0004927.1_g000023 Rmu_sc0005002.1_g000009 Rmu_sc0005002.1_g000028 Rmu_sc0005278.1_g000024 Rmu_sc0005278.1_g000025 Rmu_sc0005375.1_g000022 Rmu_sc0005728.1_g000005 Rmu_sc0005728.1_g000007 Rmu_sc0005770.1_g000017 Rmu_sc0005808.1_g000002 Rmu_sc0005808.1_g000004 Rmu_sc0006798.1_g000002 Rmu_sc0006798.1_g000003 Rmu_sc0006798.1_g000006 Rmu_sc0006798.1_g000007 Rmu_sc0006798.1_g000011 Rmu_sc0007406.1_g000014 Rmu_sc0007406.1_g000025 Rmu_sc0007965.1_g000011 Rmu_sc0009840.1_g000001 Rmu_sc0011812.1_g000005 Rmu_sc0015491.1_g000002 Rmu_sc0019008.1_g000001 Rmu_sc0019103.1_g000001 Rmu_sc0020236.1_g000002 Rmu_sc0021706.1_g000002 Rmu_sc0022958.1_g000008 Rmu_sc0026238.1_g000001 Rmu_sc0032550.1_g000001 Rmu_sc0034983.1_g000001 Rmu_sc0039890.1_g000002 Rmu_sc0041272.1_g000001 Rmu_sc0041373.1_g000001 Rmu_ssc0000100.1_g000012 Rmu_ssc0000100.1_g000017 Rmu_ssc0000100.1_g000031 Rmu_ssc0000100.1_g000033 Rmu_ssc0000386.1_g000042
rosa_roxburghii Rroxscaffold_1G00039940 Rroxscaffold_1G00039970 Rroxscaffold_1G00039980 Rroxscaffold_1G00043650 Rroxscaffold_1G00043700 Rroxscaffold_1G00047420 Rroxscaffold_1G00047430 Rroxscaffold_1G00047450 Rroxscaffold_1G00047470 Rroxscaffold_1G00047480 Rroxscaffold_1G00047500 Rroxscaffold_1G00047510 Rroxscaffold_1G00047520 Rroxscaffold_1G00047540 Rroxscaffold_1G00047570 Rroxscaffold_1G00047690 Rroxscaffold_1G00047720 Rroxscaffold_1G00047730 Rroxscaffold_1G00047740 Rroxscaffold_1G00047880 Rroxscaffold_1G00047900 Rroxscaffold_1G00047910 Rroxscaffold_1G00047920 Rroxscaffold_1G00047940 Rroxscaffold_1G00047950 Rroxscaffold_1G00047970 Rroxscaffold_1G00047980 Rroxscaffold_1G00048000 Rroxscaffold_2G00132060 Rroxscaffold_2G00132100 Rroxscaffold_2G00132110 Rroxscaffold_2G00133580 Rroxscaffold_2G00133630 Rroxscaffold_2G00133640 Rroxscaffold_2G00135480 Rroxscaffold_2G00135490 Rroxscaffold_2G00135530 Rroxscaffold_2G00135600 Rroxscaffold_2G00135630 Rroxscaffold_4G00291170 Rroxscaffold_4G00296260 Rroxscaffold_4G00296270 Rroxscaffold_4G00298840 Rroxscaffold_4G00298890 Rroxscaffold_4G00298900 Rroxscaffold_4G00298930 Rroxscaffold_4G00298960 Rroxscaffold_4G00299220 Rroxscaffold_5G00344530 Rroxscaffold_5G00353770 Rroxscaffold_5G00358640 Rroxscaffold_7G00202240 Rroxscaffold_7G00209000
rosa_rugosa Rorug01G0218600 Rorug01G0251800 Rorug01G0255100 Rorug01G0255200 Rorug01G0255500 Rorug01G0255700 Rorug01G0256400 Rorug01G0276200 Rorug01G0322400 Rorug02G0150200 Rorug02G0150300 Rorug02G0150400 Rorug02G0150700 Rorug02G0150800 Rorug02G0150900 Rorug02G0151000 Rorug02G0151100 Rorug02G0166000 Rorug02G0166100.1 Rorug02G0176300 Rorug02G0176400 Rorug02G0176700 Rorug03G0192200 Rorug03G0193100 Rorug04G0017700 Rorug04G0331400 Rorug05G0129400 Rorug05G0131900 Rorug05G0132200 Rorug05G0132300 Rorug05G0132300 Rorug05G0132400 Rorug05G0132500 Rorug05G0132600 Rorug05G0132700 Rorug05G0132800 Rorug05G0132900 Rorug05G0164000 Rorug05G0164000 Rorug05G0186700 Rorug05G0187000 Rorug05G0323000 Rorug05G0323000 Rorug05G0567400 Rorug07G0136000 Rorug07G0159500
rosa_samantha Rh1CG249900 Rh1CG253000 Rh1DG261400 Rh1DG264400 Rh1DG264800 Rh1DG264900 Rh1DG265600 Rh2AG218700 Rh2AG228900 Rh2AG229000 Rh2BG227800 Rh2BG241900 Rh2BG297700 Rh2DG224600 Rh2DG225000 Rh2DG236900 Rh3AG243400 Rh3CG273500 Rh4DG088000 Rh5CG246800 Rh5CG247800 Rh5CG252000 Rh5CG252100 Rh5CG252200 Rh5CG252500 Rh5CG252600 Rh5CG252800 Rh5CG253100 Rh5CG253200 Rh5CG253300 Rh5CG253900 Rh5CG254100 Rh5CG288700 Rh5CG288800 Rh5CG309700 Rh5CG309800 Rh5DG415100 Rh6BG078900 Rh6BG142900 Rh6CG073600 Rh6CG139500 Rh7CG210700
rosa_wichuraiana Rw0G015410 Rw1G023790 Rw1G023810 Rw1G023830 Rw1G023890 Rw1G023960 Rw1G024030 Rw1G024060 Rw1G024080 Rw1G024100 Rw2G015830 Rw2G015870 Rw2G015890 Rw2G016830 Rw2G016870 Rw2G016890 Rw2G017700 Rw2G017710 Rw2G017730 Rw3G021740 Rw3G026100 Rw4G007870 Rw5G020370 Rw5G020560 Rw5G020590 Rw5G020610 Rw5G020620 Rw5G020640 Rw5G020660 Rw5G023440 Rw5G023480 Rw5G025580 Rw5G025610 Rw5G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 582, 764
AccB7I CCANNNNNTGG 2 cut(s) 488, 900
AccII CGCG 1 cut(s) 1456
AciI CCGC 5 cut(s) 922, 1219, 1454, 1456, 1625
AclI AACGTT 1 cut(s) 1389
AclWI GGATC 8 cut(s) 464, 477, 500, 530, 543, 1102, 1445, 1458
AcoI YGGCCR 1 cut(s) 891
AcsI RAATTY 3 cut(s) 776, 991, 1613
AcuI CTGAAG 2 cut(s) 819, 986
AfiI CCNNNNNNNGG 6 cut(s) 343, 488, 748, 900, 1369, 1781
AflIII ACRYGT 1 cut(s) 1548
AgsI TTSAA 6 cut(s) 85, 641, 996, 1523, 1811, 1924
AhlI ACTAGT 1 cut(s) 1042
AjnI CCWGG 1 cut(s) 475
AluBI AGCT 7 cut(s) 30, 955, 1307, 1385, 1557, 1679, 1877
AluI AGCT 7 cut(s) 30, 955, 1307, 1385, 1557, 1679, 1877
Alw21I GWGCWC 2 cut(s) 571, 1751
Alw26I GTCTC 5 cut(s) 9, 987, 1470, 1863, 1902
Alw44I GTGCAC 1 cut(s) 1747
AlwI GGATC 8 cut(s) 464, 477, 500, 530, 543, 1102, 1445, 1458
AoxI GGCC 9 cut(s) 307, 478, 628, 739, 891, 1264, 1317, 1569, 1772
ApaLI GTGCAC 1 cut(s) 1747
ApeKI GCWGC 5 cut(s) 137, 251, 317, 1049, 1676
ApoI RAATTY 3 cut(s) 776, 991, 1613
AseI ATTAAT 1 cut(s) 114
Asp700I GAANNNNTTC 1 cut(s) 1190
AspA2I CCTAGG 1 cut(s) 304
AspLEI GCGC 3 cut(s) 142, 756, 1327
AspS9I GGNCC 5 cut(s) 479, 562, 615, 629, 1265
AsuC2I CCSGG 1 cut(s) 1477
AsuHPI GGTGA 3 cut(s) 143, 1436, 1745
AsuNHI GCTAGC 1 cut(s) 1009
AvaII GGWCC 2 cut(s) 562, 615
AvrII CCTAGG 1 cut(s) 304
BaeGI GKGCMC 1 cut(s) 1751
BalI TGGCCA 1 cut(s) 893
BamHI GGATCC 3 cut(s) 469, 535, 1450
BarI GAAGNNNNNNTAC 2 cut(s) 1104, 1136
BauI CACGAG 1 cut(s) 936
BbsI GAAGAC 1 cut(s) 322
Bbv12I GWGCWC 2 cut(s) 571, 1751
BbvI GCAGC 5 cut(s) 124, 238, 304, 1061, 1688
BccI CCATC 2 cut(s) 683, 938
BcgI CGANNNNNNTGC 2 cut(s) 116, 150
BciT130I CCWGG 1 cut(s) 477
BciVI GTATCC 2 cut(s) 787, 1490
BclI TGATCA 1 cut(s) 1705
BcnI CCSGG 1 cut(s) 1477
BcoDI GTCTC 5 cut(s) 9, 987, 1470, 1863, 1902
BcuI ACTAGT 1 cut(s) 1042
BfmI CTRYAG 2 cut(s) 252, 735
BfoI RGCGCY 2 cut(s) 757, 1328
BfuI GTATCC 2 cut(s) 787, 1490
BglII AGATCT 1 cut(s) 1126
BisI GCNGC 6 cut(s) 138, 252, 318, 1050, 1219, 1677
BlnI CCTAGG 1 cut(s) 304
BlsI GCNGC 6 cut(s) 139, 253, 319, 1051, 1220, 1678
Bme1390I CCNGG 2 cut(s) 477, 1477
Bme18I GGWCC 2 cut(s) 562, 615
BmgT120I GGNCC 5 cut(s) 479, 562, 615, 629, 1265
BmiI GGNNCC 5 cut(s) 471, 537, 1452, 1506, 1888
BmrFI CCNGG 2 cut(s) 477, 1477
BmsI GCATC 6 cut(s) 124, 870, 996, 1264, 1336, 1663
BmtI GCTAGC 1 cut(s) 1013
BpiI GAAGAC 1 cut(s) 322
BpmI CTGGAG 1 cut(s) 1491
BpuMI CCSGG 1 cut(s) 1477
BsaAI YACGTR 1 cut(s) 572
BsaBI GATNNNNATC 1 cut(s) 1704
BsaI GGTCTC 1 cut(s) 1470
BsaJI CCNNGG 6 cut(s) 304, 464, 1320, 1454, 1476, 1572
BsaWI WCCGGW 1 cut(s) 343
BsaXI ACNNNNNCTCC 2 cut(s) 1280, 1310
Bsc4I CCNNNNNNNGG 6 cut(s) 343, 488, 748, 900, 1369, 1781
Bse1I ACTGG 4 cut(s) 11, 310, 528, 1674
Bse3DI GCAATG 1 cut(s) 1817
Bse8I GATNNNNATC 1 cut(s) 1704
BseBI CCWGG 1 cut(s) 477
BseDI CCNNGG 6 cut(s) 304, 464, 1320, 1454, 1476, 1572
BseGI GGATG 5 cut(s) 675, 930, 1139, 1351, 1678
BseJI GATNNNNATC 1 cut(s) 1704
BseLI CCNNNNNNNGG 6 cut(s) 343, 488, 748, 900, 1369, 1781
BseMI GCAATG 1 cut(s) 1817
BseMII CTCAG 6 cut(s) 528, 616, 696, 1481, 1907, 1913
BseNI ACTGG 4 cut(s) 11, 310, 528, 1674
BseRI GAGGAG 3 cut(s) 502, 955, 1879
BseSI GKGCMC 1 cut(s) 1751
BseXI GCAGC 5 cut(s) 124, 238, 304, 1061, 1688
BseYI CCCAGC 2 cut(s) 320, 883
Bsh1236I CGCG 1 cut(s) 1456
BshFI GGCC 9 cut(s) 309, 480, 630, 741, 893, 1266, 1319, 1571, 1774
BsiHKAI GWGCWC 2 cut(s) 571, 1751
BsiSI CCGG 2 cut(s) 344, 1476
BslFI GGGAC 2 cut(s) 1385, 1501
BslI CCNNNNNNNGG 6 cut(s) 343, 488, 748, 900, 1369, 1781
BsmAI GTCTC 5 cut(s) 9, 987, 1470, 1863, 1902
BsmFI GGGAC 2 cut(s) 1385, 1501
BsmI GAATGC 1 cut(s) 1727
BsnI GGCC 9 cut(s) 309, 480, 630, 741, 893, 1266, 1319, 1571, 1774
Bso31I GGTCTC 1 cut(s) 1470
Bsp1286I GDGCHC 2 cut(s) 571, 1751
Bsp143I GATC 9 cut(s) 382, 469, 492, 535, 1094, 1126, 1209, 1450, 1705
Bsp19I CCATGG 1 cut(s) 464
BspACI CCGC 5 cut(s) 922, 1219, 1454, 1456, 1625
BspANI GGCC 9 cut(s) 309, 480, 630, 741, 893, 1266, 1319, 1571, 1774
BspCNI CTCAG 6 cut(s) 527, 615, 697, 1480, 1906, 1912
BspFNI CGCG 1 cut(s) 1456
BspLI GGNNCC 5 cut(s) 471, 537, 1452, 1506, 1888
BspMAI CTGCAG 1 cut(s) 256
BspOI GCTAGC 1 cut(s) 1013
BspPI GGATC 8 cut(s) 464, 477, 500, 530, 543, 1102, 1445, 1458
BspQI GCTCTTC 1 cut(s) 705
BspTNI GGTCTC 1 cut(s) 1470
BsrDI GCAATG 1 cut(s) 1817
BsrI ACTGG 4 cut(s) 11, 310, 528, 1674
BssECI CCNNGG 6 cut(s) 304, 464, 1320, 1454, 1476, 1572
BssMI GATC 9 cut(s) 382, 469, 492, 535, 1094, 1126, 1209, 1450, 1705
BssSI CACGAG 1 cut(s) 936
BssT1I CCWWGG 3 cut(s) 304, 464, 1572
Bst2BI CACGAG 1 cut(s) 936
Bst2UI CCWGG 1 cut(s) 477
Bst4CI ACNGT 4 cut(s) 190, 292, 439, 551
Bst6I CTCTTC 5 cut(s) 670, 705, 821, 923, 1145
BstBAI YACGTR 1 cut(s) 572
BstC8I GCNNGC 2 cut(s) 18, 1011
BstDEI CTNAG 9 cut(s) 26, 514, 602, 689, 705, 1440, 1467, 1893, 1899
BstDSI CCRYGG 2 cut(s) 464, 1454
BstF5I GGATG 5 cut(s) 675, 930, 1139, 1351, 1678
BstFNI CGCG 1 cut(s) 1456
BstH2I RGCGCY 2 cut(s) 757, 1328
BstHHI GCGC 3 cut(s) 142, 756, 1327
BstKTI GATC 9 cut(s) 385, 472, 495, 538, 1097, 1129, 1212, 1453, 1708
BstMAI GTCTC 5 cut(s) 9, 987, 1470, 1863, 1902
BstMBI GATC 9 cut(s) 382, 469, 492, 535, 1094, 1126, 1209, 1450, 1705
BstMWI GCNNNNNNNGC 2 cut(s) 215, 1015
BstNI CCWGG 1 cut(s) 477
BstNSI RCATGY 1 cut(s) 1552
BstSCI CCNGG 2 cut(s) 475, 1475
BstSFI CTRYAG 2 cut(s) 252, 735
BstSLI GKGCMC 1 cut(s) 1751
BstUI CGCG 1 cut(s) 1456
BstV1I GCAGC 5 cut(s) 124, 238, 304, 1061, 1688
BstV2I GAAGAC 1 cut(s) 322
BstX2I RGATCY 4 cut(s) 469, 535, 1126, 1450
BstYI RGATCY 4 cut(s) 469, 535, 1126, 1450
BsuI GTATCC 2 cut(s) 787, 1490
BsuRI GGCC 9 cut(s) 309, 480, 630, 741, 893, 1266, 1319, 1571, 1774
BtgI CCRYGG 2 cut(s) 464, 1454
BtsCI GGATG 5 cut(s) 675, 930, 1139, 1351, 1678
BtsI GCAGTG 1 cut(s) 1361
BtsIMutI CAGTG 5 cut(s) 18, 288, 556, 610, 1361
Cac8I GCNNGC 2 cut(s) 18, 1011
CfoI GCGC 3 cut(s) 142, 756, 1327
Cfr13I GGNCC 5 cut(s) 479, 562, 615, 629, 1265
Cfr42I CCGCGG 1 cut(s) 1457
CspCI CAANNNNNGTGG 2 cut(s) 394, 429
CviAII CATG 6 cut(s) 465, 771, 1340, 1501, 1549, 1840
DdeI CTNAG 9 cut(s) 26, 514, 602, 689, 705, 1440, 1467, 1893, 1899
DpnI GATC 9 cut(s) 384, 471, 494, 537, 1096, 1128, 1211, 1452, 1707
DpnII GATC 9 cut(s) 382, 469, 492, 535, 1094, 1126, 1209, 1450, 1705
EaeI YGGCCR 1 cut(s) 891
Eam1104I CTCTTC 5 cut(s) 670, 705, 821, 923, 1145
EarI CTCTTC 5 cut(s) 670, 705, 821, 923, 1145
Eco130I CCWWGG 3 cut(s) 304, 464, 1572
Eco147I AGGCCT 1 cut(s) 741
Eco31I GGTCTC 1 cut(s) 1470
Eco32I GATATC 1 cut(s) 805
Eco47I GGWCC 2 cut(s) 562, 615
Eco57I CTGAAG 2 cut(s) 819, 986
EcoRI GAATTC 2 cut(s) 776, 1613
EcoRII CCWGG 1 cut(s) 475
EcoRV GATATC 1 cut(s) 805
EcoT14I CCWWGG 3 cut(s) 304, 464, 1572
ErhI CCWWGG 3 cut(s) 304, 464, 1572
FaeI CATG 6 cut(s) 468, 774, 1343, 1504, 1552, 1843
FalI AAGNNNNNCTT 4 cut(s) 231, 263, 1142, 1174
FaqI GGGAC 2 cut(s) 1385, 1501
FatI CATG 6 cut(s) 464, 770, 1339, 1500, 1548, 1839
FbaI TGATCA 1 cut(s) 1705
Fnu4HI GCNGC 6 cut(s) 138, 252, 318, 1050, 1219, 1677
FokI GGATG 5 cut(s) 662, 937, 1146, 1358, 1685
Fsp4HI GCNGC 6 cut(s) 138, 252, 318, 1050, 1219, 1677
GlaI GCGC 3 cut(s) 141, 755, 1326
GluI GCNGC 6 cut(s) 138, 252, 318, 1050, 1219, 1677
GsaI CCCAGC 2 cut(s) 324, 887
GsuI CTGGAG 1 cut(s) 1491
HaeII RGCGCY 2 cut(s) 757, 1328
HaeIII GGCC 9 cut(s) 309, 480, 630, 741, 893, 1266, 1319, 1571, 1774
HapII CCGG 2 cut(s) 344, 1476
HhaI GCGC 3 cut(s) 142, 756, 1327
Hin1II CATG 6 cut(s) 468, 774, 1343, 1504, 1552, 1843
Hin6I GCGC 3 cut(s) 140, 754, 1325
HinP1I GCGC 3 cut(s) 140, 754, 1325
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 6 cut(s) 358, 934, 962, 1116, 1155, 1541
HpaI GTTAAC 1 cut(s) 295
HpaII CCGG 2 cut(s) 344, 1476
HphI GGTGA 3 cut(s) 143, 1436, 1745
Hpy166II GTNNAC 6 cut(s) 245, 286, 295, 349, 1108, 1749
Hpy188I TCNGA 8 cut(s) 357, 382, 751, 787, 1005, 1171, 1470, 1546
Hpy188III TCNNGA 5 cut(s) 457, 704, 1098, 1207, 1508
Hpy8I GTNNAC 6 cut(s) 245, 286, 295, 349, 1108, 1749
Hpy99I CGWCG 2 cut(s) 626, 1610
HpyAV CCTTC 9 cut(s) 68, 91, 122, 153, 1071, 1106, 1373, 1517, 1587
HpyCH4III ACNGT 4 cut(s) 190, 292, 439, 551
HpyCH4IV ACGT 2 cut(s) 571, 1389
HpyCH4V TGCA 9 cut(s) 254, 857, 977, 1049, 1163, 1349, 1658, 1676, 1749
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 1015
HpyF3I CTNAG 9 cut(s) 26, 514, 602, 689, 705, 1440, 1467, 1893, 1899
HpySE526I ACGT 2 cut(s) 571, 1389
Hsp92II CATG 6 cut(s) 468, 774, 1343, 1504, 1552, 1843
HspAI GCGC 3 cut(s) 140, 754, 1325
Ksp22I TGATCA 1 cut(s) 1705
KspAI GTTAAC 1 cut(s) 295
KspI CCGCGG 1 cut(s) 1457
Kzo9I GATC 9 cut(s) 382, 469, 492, 535, 1094, 1126, 1209, 1450, 1705
LguI GCTCTTC 1 cut(s) 705
LmnI GCTCC 4 cut(s) 346, 751, 1510, 1892
Lsp1109I GCAGC 5 cut(s) 124, 238, 304, 1061, 1688
LweI GCATC 6 cut(s) 124, 870, 996, 1264, 1336, 1663
MaeII ACGT 2 cut(s) 571, 1389
MaeIII GTNAC 2 cut(s) 433, 712
MalI GATC 9 cut(s) 384, 471, 494, 537, 1096, 1128, 1211, 1452, 1707
MboI GATC 9 cut(s) 382, 469, 492, 535, 1094, 1126, 1209, 1450, 1705
MfeI CAATTG 1 cut(s) 717
MflI RGATCY 4 cut(s) 469, 535, 1126, 1450
MhlI GDGCHC 2 cut(s) 571, 1751
MlsI TGGCCA 1 cut(s) 893
MluNI TGGCCA 1 cut(s) 893
MlyI GAGTC 2 cut(s) 928, 956
MmeI TCCRAC 4 cut(s) 1194, 1377, 1717, 1828
Mox20I TGGCCA 1 cut(s) 893
MroXI GAANNNNTTC 1 cut(s) 1190
MscI TGGCCA 1 cut(s) 893
MslI CAYNNNNRTG 2 cut(s) 878, 1344
Msp20I TGGCCA 1 cut(s) 893
MspA1I CMGCKG 2 cut(s) 1456, 1679
MspI CCGG 2 cut(s) 344, 1476
MspR9I CCNGG 2 cut(s) 477, 1477
MunI CAATTG 1 cut(s) 717
Mva1269I GAATGC 1 cut(s) 1727
MvaI CCWGG 1 cut(s) 477
MvnI CGCG 1 cut(s) 1456
MwoI GCNNNNNNNGC 2 cut(s) 215, 1015
NciI CCSGG 1 cut(s) 1477
NcoI CCATGG 1 cut(s) 464
NdeII GATC 9 cut(s) 382, 469, 492, 535, 1094, 1126, 1209, 1450, 1705
NheI GCTAGC 1 cut(s) 1009
NlaIII CATG 6 cut(s) 468, 774, 1343, 1504, 1552, 1843
NlaIV GGNNCC 5 cut(s) 471, 537, 1452, 1506, 1888
NmeAIII GCCGAG 2 cut(s) 244, 1301
NspI RCATGY 1 cut(s) 1552
PceI AGGCCT 1 cut(s) 741
PciI ACATGT 1 cut(s) 1548
PciSI GCTCTTC 1 cut(s) 705
PctI GAATGC 1 cut(s) 1727
PdmI GAANNNNTTC 1 cut(s) 1190
PfeI GAWTC 4 cut(s) 358, 1116, 1155, 1541
PflMI CCANNNNNTGG 2 cut(s) 488, 900
PkrI GCNGC 6 cut(s) 139, 253, 319, 1051, 1220, 1678
PleI GAGTC 2 cut(s) 928, 956
PpsI GAGTC 2 cut(s) 928, 956
Ppu21I YACGTR 1 cut(s) 572
PscI ACATGT 1 cut(s) 1548
PshBI ATTAAT 1 cut(s) 114
PsiI TTATAA 2 cut(s) 582, 764
Psp1406I AACGTT 1 cut(s) 1389
Psp6I CCWGG 1 cut(s) 475
PspFI CCCAGC 2 cut(s) 320, 883
PspGI CCWGG 1 cut(s) 475
PspN4I GGNNCC 5 cut(s) 471, 537, 1452, 1506, 1888
PspPI GGNCC 5 cut(s) 479, 562, 615, 629, 1265
PsrI GAACNNNNNNTAC 2 cut(s) 1782, 1814
PstI CTGCAG 1 cut(s) 256
PsuI RGATCY 4 cut(s) 469, 535, 1126, 1450
PvuII CAGCTG 1 cut(s) 1679
RseI CAYNNNNRTG 2 cut(s) 878, 1344
SacII CCGCGG 1 cut(s) 1457
SapI GCTCTTC 1 cut(s) 705
SatI GCNGC 6 cut(s) 138, 252, 318, 1050, 1219, 1677
Sau3AI GATC 9 cut(s) 382, 469, 492, 535, 1094, 1126, 1209, 1450, 1705
Sau96I GGNCC 5 cut(s) 479, 562, 615, 629, 1265
SchI GAGTC 2 cut(s) 928, 956
ScrFI CCNGG 2 cut(s) 477, 1477
SduI GDGCHC 2 cut(s) 571, 1751
SfaNI GCATC 6 cut(s) 124, 870, 996, 1264, 1336, 1663
SfcI CTRYAG 2 cut(s) 252, 735
Sfr303I CCGCGG 1 cut(s) 1457
SgrBI CCGCGG 1 cut(s) 1457
SinI GGWCC 2 cut(s) 562, 615
SmiMI CAYNNNNRTG 2 cut(s) 878, 1344
SpeI ACTAGT 1 cut(s) 1042
SseBI AGGCCT 1 cut(s) 741
SsiI CCGC 5 cut(s) 922, 1219, 1454, 1456, 1625
SspI AATATT 1 cut(s) 118
StuI AGGCCT 1 cut(s) 741
StyD4I CCNGG 2 cut(s) 475, 1475
StyI CCWWGG 3 cut(s) 304, 464, 1572
TaaI ACNGT 4 cut(s) 190, 292, 439, 551
TaiI ACGT 2 cut(s) 574, 1392
TaqI TCGA 2 cut(s) 447, 458
TaqII GACCGA 1 cut(s) 579
TauI GCSGC 1 cut(s) 1221
TfiI GAWTC 4 cut(s) 358, 1116, 1155, 1541
TscAI CASTG 5 cut(s) 18, 295, 556, 610, 1361
TseI GCWGC 5 cut(s) 137, 251, 317, 1049, 1676
TspGWI ACGGA 3 cut(s) 185, 639, 1623
TspRI CASTG 5 cut(s) 18, 295, 556, 610, 1361
Van91I CCANNNNNTGG 2 cut(s) 488, 900
VneI GTGCAC 1 cut(s) 1747
VpaK11BI GGWCC 2 cut(s) 562, 615
VspI ATTAAT 1 cut(s) 114
XapI RAATTY 3 cut(s) 776, 991, 1613
XceI RCATGY 1 cut(s) 1552
XcmI CCANNNNNNNNNTGG 1 cut(s) 317
XmaJI CCTAGG 1 cut(s) 304
XmnI GAANNNNTTC 1 cut(s) 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.