MD03G1233900.v1.1

L-type lectin-domain containing receptor kinase IX.1-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
31958275 .. 31960389
2115 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1233900.v1.1.491

Sequence Viewer

Length: 2115 bp
ATGGTTGTCTCACCAAAGCAGCTCCAATTCCTTCTTCTGTCGTTTCAATTATTTTCTTGTGTATCTCCATTATCTTTCAACTTCTCCACCTTTCCAAATGGCATCAAAAACTTATCTCTCGAGGGAGACGCTTACATCGATGGCAAATATCTTCGACTTACCAAAAGCGCTGTTGACGACGTACAGAACCAAAGTGTAGGTCGAGCCACCTACAGCCAACCCTTCCTCCTCCGAGACAAGGTCACGGGAAAGCTTGCCGATTTCACAACAAACTTCACATTTGTCATCGATTCCAGAGGCAAGACACCCTATGCGGACGGATTCGCCTTCTTTTTGGCGCCAAATGGATCCTTACTCAACAAGACAATAGGCAGAGGCGGCAGTCTAGGACTCCCCGTGGACACTTCTCCCGACGTGTCAAAAATTCAGTACCCTTTCTGGGCGGTGGAACTTGATATCTACCGGAATAATGTGACATCTGTGGAAGATCCTGCCGGAGATCATGTCGGAGTAGACATCAACTCTGTGAAGTCTAAGATGACCGAATCGTGGAATGGTAGTATTACAAACGGACGAGTCAATAGTGTTGGGATTAGTTATGATTCTTCATCAAAGCATGTTGGTATTGTTTTCACAAGTTATGTGAAAGATGTTCAAGTTATGAAGTATATGGATTGCAGGGTTGATTTGAATGAAATCCTCCAGGGTTGGGTCGTTGTTGGGTTCTCCGCCGCAACAGGTTCTCTGACTGCTGTGGACAAGATCCAATCATGGAGTTTTAATTCGTTTCAACTGCGTGAAGAGAATGAAACGAAGAACACGCCAGTGGTTCCTGAGCCGAGCCCCATTGTTGATCCCAAGTCAGGAAATGGGGTCAACGTAGGACTAATTGTTGGTTTGGGTGCTGGTGGGATTGCTTTCTTGGTTGGTGGGTTGGGTTTGGTTTGGTTTTTGATTTGGAAGAAGAGCGCAGGTAGTTCAAAAGATGGAATGGTTAACGACTGGATCGATGAGGAGTTCCAAAAGGGAACAGGCCCCAAGAAGTTTTCGTACAGAACATTGGCTAGATCAACAAGTAATTTTGATGAAAGAGAGAAGCTTGGAGAGGGAGGATTTGGTGGAGTTTATCGAGGCTTCATAAAAGACTTGAACGCGTATGTTGCTGTTAAGAGGGTATCAAGCAGGTCTAGACAGGGGATGAAGGAGTATGCAGCAGAAGTAAGGATCATCAGCCGGCTAAGGCATCGGAATCTGGTGCAACTCATTGGTTGGTGCCATGAAAAAAGAGAACTCTTACTTGTGTATGAGTTCATGTCCAACGGCAGCTTGGATTCCCATTTGTTCAAAGGGAAAACCTTGTTAGATTGGGAGGCAAGAAACAAAATTGTTCAAGGCTTGGCATCTGGGTTGTTGTATCTACACGAAGAATGGGAACAATGTGTGCTGCACAGGGATATCAAATCCAGCAATATCATGTTGGACTCAAATTTAAACGCAAAACTTGGGGATTTTGGGTTAGCTCGGCTTGTTGACCATGGAAAACAATCACAAACAACAGTTCTGGCCGGAACTATGGGCTACATGGCTCCTGAATGTCTTACCACAGGAAAGGCTAGCAAGGAAACAGATGTCTACAGCTTTGGAGTTGTTGCCTTGGAGATAGCTTGTGGGCGAAAACCCATTGATCCCAATTTGGAAAGTAGTGAAAGGAATATGGCGGAGTGGGTTTGGGAGCTTTATGGACAAGGGAAAGTCATTGAAGCAACTGACCCTAAATTGTGTGGAGAGTTTGATGAGAAACAAATGGAATGTTTGTTGGTTGTTGGGTTGTGGTGTGTTCATCCGGATTACACTATCAGGCCTTCGATACAACAAACGATTCAAGTGCTTAATTTTGAAGTTCCATTACCTATTCTCCCGTCGAAGATGCCGGTGGCTAGCTACTCTTCACCTCCGGTAACATTGTCAATTTTGTCTGCTGATACTACAGATTTGGAAAGAGGTGAAACTGATTCTTCAGGCTATCGTTACAACACCAACTCCTCACAGTTCACCCAATCTTCTGCATCAAATTCTTCTTCATCAGCACACTTTAGTACACAAAATAAATTTTAA

Protein Analysis

705

Amino Acids

77.66

Weight (kDa)

6.14

Isoelectric Point (pI)

35.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 24 - 274 1.5e-56 Legume lectin domain
Lectin_L-type_dom PF18483 38 - 256 1.3e-09 Legume lectin beta-barrel domain
Pkinase PF00069 362 - 628 2.3e-52 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 364 - 562 8.4e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G10530 AT5G65600
fragaria_vesca FvH4_1g17770 FvH4_1g19171 FvH4_1g19180 FvH4_1g19922 FvH4_1g19923 FvH4_1g19940 FvH4_1g19950 FvH4_3g19030 FvH4_3g19040 FvH4_3g19350 FvH4_3g19361 FvH4_3g19370 FvH4_3g19372 FvH4_3g19390 FvH4_3g19390 FvH4_3g19400 FvH4_3g19400 FvH4_3g23100 FvH4_3g32500 FvH4_3g39140 FvH4_4g12891 FvH4_4g12900 FvH4_5g13890 FvH4_6g23490 FvH4_7g14930 FvH4_7g14950 FvH4_7g15082 FvH4_7g16980
malus_domestica MD01G1043400.v1.1 MD01G1043500.v1.1 MD03G1232800.v1.1 MD03G1232900.v1.1 MD03G1233000.v1.1 MD03G1233100.v1.1 MD03G1233200.v1.1 MD03G1233300.v1.1 MD03G1233600.v1.1 MD03G1233700.v1.1 MD03G1233900.v1.1 MD03G1234100.v1.1 MD03G1234300.v1.1 MD03G1234400.v1.1 MD03G1234500.v1.1 MD03G1234600.v1.1 MD08G1053200.v1.1 MD08G1053400.v1.1 MD08G1053500.v1.1 MD08G1053600.v1.1 MD08G1053800.v1.1 MD08G1053900.v1.1 MD08G1054000.v1.1 MD08G1054100.v1.1 MD08G1054200.v1.1 MD08G1054400.v1.1 MD08G1054600.v1.1 MD09G1175200.v1.1 MD09G1289800.v1.1 MD09G1289900.v1.1 MD11G1253600.v1.1 MD11G1254300.v1.1 MD11G1254500.v1.1 MD11G1254900.v1.1 MD11G1255100.v1.1 MD15G1042500.v1.1 MD15G1053100.v1.1 MD15G1053200.v1.1 MD15G1307500.v1.1
prunus_persica Prupe.1G157800_v2.0.a1 Prupe.1G395700_v2.0.a1 Prupe.4G174600_v2.0.a1 Prupe.4G174800_v2.0.a1 Prupe.4G174900_v2.0.a1 Prupe.4G175000_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175100_v2.0.a1 Prupe.4G175300_v2.0.a1 Prupe.4G175400_v2.0.a1 Prupe.4G175500_v2.0.a1 Prupe.4G175600_v2.0.a1 Prupe.4G175700_v2.0.a1 Prupe.4G241200_v2.0.a1 Prupe.6G208500_v2.0.a1 Prupe.6G208700_v2.0.a1 Prupe.6G208800_v2.0.a1 Prupe.8G117500_v2.0.a1 Prupe.I004200_v2.0.a1 Prupe.I004300_v2.0.a1
pyrus_communis pycom03g18010 pycom03g18050 pycom03g18070 pycom03g18100 pycom08g04440 pycom09g19760 pycom11g22500 pycom11g22510 pycom11g22520
rosa_chinensis RchiOBHm_Chr1g0318811 RchiOBHm_Chr1g0329471 RchiOBHm_Chr1g0340841 RchiOBHm_Chr1g0340931 RchiOBHm_Chr1g0356861 RchiOBHm_Chr1g0357251 RchiOBHm_Chr1g0357261 RchiOBHm_Chr1g0357321 RchiOBHm_Chr1g0360231 RchiOBHm_Chr1g0365521 RchiOBHm_Chr1g0365571 RchiOBHm_Chr1g0365581 RchiOBHm_Chr2g0108101 RchiOBHm_Chr2g0108131 RchiOBHm_Chr2g0108161 RchiOBHm_Chr2g0108191 RchiOBHm_Chr2g0108201 RchiOBHm_Chr2g0110211 RchiOBHm_Chr2g0110221 RchiOBHm_Chr2g0110261 RchiOBHm_Chr2g0110301 RchiOBHm_Chr2g0111801 RchiOBHm_Chr2g0111821 RchiOBHm_Chr2g0128081 RchiOBHm_Chr2g0151141 RchiOBHm_Chr3g0469441 RchiOBHm_Chr3g0481491 RchiOBHm_Chr4g0399611 RchiOBHm_Chr4g0414891 RchiOBHm_Chr5g0031941 RchiOBHm_Chr5g0032011 RchiOBHm_Chr5g0032051 RchiOBHm_Chr5g0032101 RchiOBHm_Chr5g0032421 RchiOBHm_Chr5g0032461 RchiOBHm_Chr5g0032481 RchiOBHm_Chr5g0032541 RchiOBHm_Chr5g0032571 RchiOBHm_Chr5g0032591 RchiOBHm_Chr5g0032631 RchiOBHm_Chr5g0037251 RchiOBHm_Chr5g0037271 RchiOBHm_Chr5g0037281 RchiOBHm_Chr5g0037291 RchiOBHm_Chr5g0040701 RchiOBHm_Chr5g0040731 RchiOBHm_Chr5g0059491 RchiOBHm_Chr6g0257841 RchiOBHm_Chr6g0274701 RchiOBHm_Chr7g0212711
rosa_laevigata RLG00000002585 RLG00000002586 RLG00000008111 RLG00000009258 RLG00000012123 RLG00000014148 RLG00000014734 RLG00000017640 RLG00000017642 RLG00000017645 RLG00000017646 RLG00000017795 RLG00000017796 RLG00000017925 RLG00000017926 RLG00000020068 RLG00000023393 RLG00000024495 RLG00000028027 RLG00000028033 RLG00000028034 RLG00000028035 RLG00000028037 RLG00000028040 RLG00000028041 RLG00000028072 RLG00000028159 RLG00000028160 RLG00000033360 RLG00000033399 RLG00000033401 RLG00000033402 RLG00000033403 RLG00000033404 RLG00000033405 RLG00000033407 RLG00000033408 RLG00000033411 RLG00000033414 RLG00000033470 RLG00000033769 RLG00000033772 RLG00000033997
rosa_multiflora Rmu_co8044118.1_g000001 Rmu_co8077552.1_g000001 Rmu_co8082100.1_g000001 Rmu_co8171646.1_g000001 Rmu_co8225604.1_g000001 Rmu_co8285705.1_g000001 Rmu_co8296369.1_g000001 Rmu_co8319685.1_g000001 Rmu_co8326977.1_g000001 Rmu_co8421957.1_g000001 Rmu_co8457997.1_g000001 Rmu_co8464379.1_g000001 Rmu_co8466539.1_g000001 Rmu_sc0000055.1_g000016 Rmu_sc0000064.1_g000032 Rmu_sc0000316.1_g000004 Rmu_sc0000316.1_g000010 Rmu_sc0000316.1_g000011 Rmu_sc0000394.1_g000016 Rmu_sc0001017.1_g000022 Rmu_sc0001484.1_g000003 Rmu_sc0002530.1_g000028 Rmu_sc0002530.1_g000031 Rmu_sc0002530.1_g000035 Rmu_sc0002587.1_g000043 Rmu_sc0002719.1_g000003 Rmu_sc0002719.1_g000005 Rmu_sc0002964.1_g000011 Rmu_sc0003031.1_g000001 Rmu_sc0003031.1_g000014 Rmu_sc0003031.1_g000027 Rmu_sc0003031.1_g000053 Rmu_sc0003552.1_g000003 Rmu_sc0003656.1_g000001 Rmu_sc0003916.1_g000001 Rmu_sc0003916.1_g000003 Rmu_sc0004100.1_g000001 Rmu_sc0004129.1_g000008 Rmu_sc0004365.1_g000001 Rmu_sc0004365.1_g000002 Rmu_sc0004542.1_g000017 Rmu_sc0004792.1_g000029 Rmu_sc0004792.1_g000032 Rmu_sc0004792.1_g000034 Rmu_sc0004792.1_g000035 Rmu_sc0004927.1_g000003 Rmu_sc0004927.1_g000005 Rmu_sc0004927.1_g000013 Rmu_sc0004927.1_g000023 Rmu_sc0005002.1_g000009 Rmu_sc0005002.1_g000028 Rmu_sc0005278.1_g000024 Rmu_sc0005278.1_g000025 Rmu_sc0005375.1_g000022 Rmu_sc0005728.1_g000005 Rmu_sc0005728.1_g000007 Rmu_sc0005770.1_g000017 Rmu_sc0005808.1_g000002 Rmu_sc0005808.1_g000004 Rmu_sc0006798.1_g000002 Rmu_sc0006798.1_g000003 Rmu_sc0006798.1_g000006 Rmu_sc0006798.1_g000007 Rmu_sc0006798.1_g000011 Rmu_sc0007406.1_g000014 Rmu_sc0007406.1_g000025 Rmu_sc0007965.1_g000011 Rmu_sc0009840.1_g000001 Rmu_sc0011812.1_g000005 Rmu_sc0015491.1_g000002 Rmu_sc0019008.1_g000001 Rmu_sc0019103.1_g000001 Rmu_sc0020236.1_g000002 Rmu_sc0021706.1_g000002 Rmu_sc0022958.1_g000008 Rmu_sc0026238.1_g000001 Rmu_sc0032550.1_g000001 Rmu_sc0034983.1_g000001 Rmu_sc0039890.1_g000002 Rmu_sc0041272.1_g000001 Rmu_sc0041373.1_g000001 Rmu_ssc0000100.1_g000012 Rmu_ssc0000100.1_g000017 Rmu_ssc0000100.1_g000031 Rmu_ssc0000100.1_g000033 Rmu_ssc0000386.1_g000042
rosa_roxburghii Rroxscaffold_1G00039940 Rroxscaffold_1G00039970 Rroxscaffold_1G00039980 Rroxscaffold_1G00043650 Rroxscaffold_1G00043700 Rroxscaffold_1G00047420 Rroxscaffold_1G00047430 Rroxscaffold_1G00047450 Rroxscaffold_1G00047470 Rroxscaffold_1G00047480 Rroxscaffold_1G00047500 Rroxscaffold_1G00047510 Rroxscaffold_1G00047520 Rroxscaffold_1G00047540 Rroxscaffold_1G00047570 Rroxscaffold_1G00047690 Rroxscaffold_1G00047720 Rroxscaffold_1G00047730 Rroxscaffold_1G00047740 Rroxscaffold_1G00047880 Rroxscaffold_1G00047900 Rroxscaffold_1G00047910 Rroxscaffold_1G00047920 Rroxscaffold_1G00047940 Rroxscaffold_1G00047950 Rroxscaffold_1G00047970 Rroxscaffold_1G00047980 Rroxscaffold_1G00048000 Rroxscaffold_2G00132060 Rroxscaffold_2G00132100 Rroxscaffold_2G00132110 Rroxscaffold_2G00133580 Rroxscaffold_2G00133630 Rroxscaffold_2G00133640 Rroxscaffold_2G00135480 Rroxscaffold_2G00135490 Rroxscaffold_2G00135530 Rroxscaffold_2G00135600 Rroxscaffold_2G00135630 Rroxscaffold_4G00291170 Rroxscaffold_4G00296260 Rroxscaffold_4G00296270 Rroxscaffold_4G00298840 Rroxscaffold_4G00298890 Rroxscaffold_4G00298900 Rroxscaffold_4G00298930 Rroxscaffold_4G00298960 Rroxscaffold_4G00299220 Rroxscaffold_5G00344530 Rroxscaffold_5G00353770 Rroxscaffold_5G00358640 Rroxscaffold_7G00202240 Rroxscaffold_7G00209000
rosa_rugosa Rorug01G0218600 Rorug01G0251800 Rorug01G0255100 Rorug01G0255200 Rorug01G0255500 Rorug01G0255700 Rorug01G0256400 Rorug01G0276200 Rorug01G0322400 Rorug02G0150200 Rorug02G0150300 Rorug02G0150400 Rorug02G0150700 Rorug02G0150800 Rorug02G0150900 Rorug02G0151000 Rorug02G0151100 Rorug02G0166000 Rorug02G0166100.1 Rorug02G0176300 Rorug02G0176400 Rorug02G0176700 Rorug03G0192200 Rorug03G0193100 Rorug04G0017700 Rorug04G0331400 Rorug05G0129400 Rorug05G0131900 Rorug05G0132200 Rorug05G0132300 Rorug05G0132300 Rorug05G0132400 Rorug05G0132500 Rorug05G0132600 Rorug05G0132700 Rorug05G0132800 Rorug05G0132900 Rorug05G0164000 Rorug05G0164000 Rorug05G0186700 Rorug05G0187000 Rorug05G0323000 Rorug05G0323000 Rorug05G0567400 Rorug07G0136000 Rorug07G0159500
rosa_samantha Rh1CG249900 Rh1CG253000 Rh1DG261400 Rh1DG264400 Rh1DG264800 Rh1DG264900 Rh1DG265600 Rh2AG218700 Rh2AG228900 Rh2AG229000 Rh2BG227800 Rh2BG241900 Rh2BG297700 Rh2DG224600 Rh2DG225000 Rh2DG236900 Rh3AG243400 Rh3CG273500 Rh4DG088000 Rh5CG246800 Rh5CG247800 Rh5CG252000 Rh5CG252100 Rh5CG252200 Rh5CG252500 Rh5CG252600 Rh5CG252800 Rh5CG253100 Rh5CG253200 Rh5CG253300 Rh5CG253900 Rh5CG254100 Rh5CG288700 Rh5CG288800 Rh5CG309700 Rh5CG309800 Rh5DG415100 Rh6BG078900 Rh6BG142900 Rh6CG073600 Rh6CG139500 Rh7CG210700
rosa_wichuraiana Rw0G015410 Rw1G023790 Rw1G023810 Rw1G023830 Rw1G023890 Rw1G023960 Rw1G024030 Rw1G024060 Rw1G024080 Rw1G024100 Rw2G015830 Rw2G015870 Rw2G015890 Rw2G016830 Rw2G016870 Rw2G016890 Rw2G017700 Rw2G017710 Rw2G017730 Rw3G021740 Rw3G026100 Rw4G007870 Rw5G020370 Rw5G020560 Rw5G020590 Rw5G020610 Rw5G020620 Rw5G020640 Rw5G020660 Rw5G023440 Rw5G023480 Rw5G025580 Rw5G025610 Rw5G025640

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 962, 1173
AccB1I GGYRCC 2 cut(s) 337, 1272
AccI GTMKAC 2 cut(s) 513, 1632
AccII CGCG 1 cut(s) 1154
AccIII TCCGGA 1 cut(s) 1843
AciI CCGC 6 cut(s) 314, 378, 443, 729, 732, 1718
AclWI GGATC 8 cut(s) 342, 355, 482, 757, 848, 1013, 1232, 1679
AcoI YGGCCR 1 cut(s) 1563
AcsI RAATTY 4 cut(s) 423, 1486, 2071, 2108
AcuI CTGAAG 1 cut(s) 2001
AcyI GRCGYC 1 cut(s) 338
AfaI GTAC 4 cut(s) 183, 431, 1052, 2098
AfeI AGCGCT 1 cut(s) 169
AfiI CCNNNNNNNGG 5 cut(s) 238, 439, 549, 709, 863
AflIII ACRYGT 2 cut(s) 414, 1152
AjiI CACGTC 1 cut(s) 415
AjnI CCWGG 1 cut(s) 702
AjuI GAANNNNNNNTTGG 2 cut(s) 18, 50
AleI CACNNNNGTG 1 cut(s) 824
AluBI AGCT 9 cut(s) 22, 253, 1099, 1326, 1520, 1638, 1664, 1735, 1941
AluI AGCT 9 cut(s) 22, 253, 1099, 1326, 1520, 1638, 1664, 1735, 1941
Alw26I GTCTC 3 cut(s) 13, 120, 228
AlwI GGATC 8 cut(s) 342, 355, 482, 757, 848, 1013, 1232, 1679
Ama87I CYCGRG 1 cut(s) 119
Aor13HI TCCGGA 1 cut(s) 1843
Aor51HI AGCGCT 1 cut(s) 169
AoxI GGCC 3 cut(s) 1033, 1563, 1859
ApeKI GCWGC 4 cut(s) 19, 1211, 1323, 1444
ApoI RAATTY 4 cut(s) 423, 1486, 2071, 2108
ArsI GACNNNNNNTTYG 2 cut(s) 184, 216
AspLEI GCGC 3 cut(s) 170, 340, 971
AspS9I GGNCC 1 cut(s) 1034
AsuHPI GGTGA 4 cut(s) 3, 1941, 2015, 2044
AsuNHI GCTAGC 2 cut(s) 1613, 1937
AvaI CYCGRG 1 cut(s) 119
BamHI GGATCC 1 cut(s) 347
BanI GGYRCC 2 cut(s) 337, 1272
BanII GRGCYC 1 cut(s) 845
BarI GAAGNNNNNNTAC 4 cut(s) 1034, 1066, 1890, 1922
BbvI GCAGC 4 cut(s) 31, 1223, 1335, 1431
BccI CCATC 2 cut(s) 134, 980
BceAI ACGGC 1 cut(s) 1336
BcgI CGANNNNNNTGC 2 cut(s) 1867, 1901
BciT130I CCWGG 1 cut(s) 704
BcoDI GTCTC 3 cut(s) 13, 120, 228
BfaI CTAG 5 cut(s) 386, 1065, 1188, 1614, 1938
BfmI CTRYAG 3 cut(s) 211, 1633, 1986
BfoI RGCGCY 2 cut(s) 171, 341
BfuAI ACCTGC 2 cut(s) 962, 1173
BisI GCNGC 6 cut(s) 20, 379, 732, 1212, 1324, 1445
BlsI GCNGC 6 cut(s) 21, 380, 733, 1213, 1325, 1446
Bme1390I CCNGG 1 cut(s) 704
BmeT110I CYCGRG 1 cut(s) 119
BmgBI CACGTC 1 cut(s) 415
BmgT120I GGNCC 1 cut(s) 1034
BmiI GGNNCC 6 cut(s) 339, 349, 831, 1036, 1274, 1587
BmrFI CCNGG 1 cut(s) 704
BmsI GCATC 5 cut(s) 111, 1252, 1409, 1917, 2075
BmtI GCTAGC 2 cut(s) 1617, 1941
BpmI CTGGAG 1 cut(s) 686
Bpu10I CCTNAGC 2 cut(s) 834, 1238
Bsa29I ATCGAT 3 cut(s) 138, 288, 1008
BsaHI GRCGYC 1 cut(s) 338
BsaJI CCNNGG 4 cut(s) 396, 703, 1534, 1653
BsaWI WCCGGW 3 cut(s) 462, 1843, 1954
BsaXI ACNNNNNCTCC 8 cut(s) 210, 240, 489, 519, 1899, 1929, 2024, 2054
Bsc4I CCNNNNNNNGG 5 cut(s) 238, 439, 549, 709, 863
Bse118I RCCGGY 2 cut(s) 1233, 1930
Bse1I ACTGG 2 cut(s) 824, 1007
BseAI TCCGGA 1 cut(s) 1843
BseBI CCWGG 1 cut(s) 704
BseCI ATCGAT 3 cut(s) 138, 288, 1008
BseDI CCNNGG 4 cut(s) 396, 703, 1534, 1653
BseGI GGATG 2 cut(s) 1203, 1840
BseLI CCNNNNNNNGG 5 cut(s) 238, 439, 549, 709, 863
BseMII CTCAG 1 cut(s) 825
BseNI ACTGG 2 cut(s) 824, 1007
BseRI GAGGAG 3 cut(s) 218, 1028, 2032
BseXI GCAGC 4 cut(s) 31, 1223, 1335, 1431
BsgI GTGCAG 1 cut(s) 1430
Bsh1236I CGCG 1 cut(s) 1154
BshFI GGCC 3 cut(s) 1035, 1565, 1861
BshNI GGYRCC 2 cut(s) 337, 1272
BshVI ATCGAT 3 cut(s) 138, 288, 1008
BsiHKCI CYCGRG 1 cut(s) 119
BsiSI CCGG 7 cut(s) 463, 495, 1234, 1566, 1844, 1931, 1955
BslI CCNNNNNNNGG 5 cut(s) 238, 439, 549, 709, 863
BsmAI GTCTC 3 cut(s) 13, 120, 228
BsmBI CGTCTC 1 cut(s) 120
BsnI GGCC 3 cut(s) 1035, 1565, 1861
BsoBI CYCGRG 1 cut(s) 119
Bsp1286I GDGCHC 1 cut(s) 845
Bsp13I TCCGGA 1 cut(s) 1843
Bsp143I GATC 9 cut(s) 347, 487, 499, 762, 853, 1005, 1067, 1224, 1684
Bsp19I CCATGG 1 cut(s) 1534
BspACI CCGC 6 cut(s) 314, 378, 443, 729, 732, 1718
BspANI GGCC 3 cut(s) 1035, 1565, 1861
BspCNI CTCAG 1 cut(s) 826
BspDI ATCGAT 3 cut(s) 138, 288, 1008
BspEI TCCGGA 1 cut(s) 1843
BspFNI CGCG 1 cut(s) 1154
BspLI GGNNCC 6 cut(s) 339, 349, 831, 1036, 1274, 1587
BspMI ACCTGC 2 cut(s) 962, 1173
BspOI GCTAGC 2 cut(s) 1617, 1941
BspPI GGATC 8 cut(s) 342, 355, 482, 757, 848, 1013, 1232, 1679
BspQI GCTCTTC 1 cut(s) 959
BspT107I GGYRCC 2 cut(s) 337, 1272
BsrFI RCCGGY 2 cut(s) 1233, 1930
BsrI ACTGG 2 cut(s) 824, 1007
BssAI RCCGGY 2 cut(s) 1233, 1930
BssECI CCNNGG 4 cut(s) 396, 703, 1534, 1653
BssMI GATC 9 cut(s) 347, 487, 499, 762, 853, 1005, 1067, 1224, 1684
BssNI GRCGYC 1 cut(s) 338
BssT1I CCWWGG 2 cut(s) 1534, 1653
Bst2UI CCWGG 1 cut(s) 704
Bst4CI ACNGT 2 cut(s) 1558, 2049
Bst6I CTCTTC 3 cut(s) 795, 959, 1951
BstACI GRCGYC 1 cut(s) 338
BstC8I GCNNGC 4 cut(s) 255, 1235, 1615, 1939
BstDEI CTNAG 3 cut(s) 534, 834, 1238
BstDSI CCRYGG 2 cut(s) 396, 1534
BstF5I GGATG 2 cut(s) 1203, 1840
BstFNI CGCG 1 cut(s) 1154
BstH2I RGCGCY 2 cut(s) 171, 341
BstHHI GCGC 3 cut(s) 170, 340, 971
BstKTI GATC 9 cut(s) 350, 490, 502, 765, 856, 1008, 1070, 1227, 1687
BstMAI GTCTC 3 cut(s) 13, 120, 228
BstMBI GATC 9 cut(s) 347, 487, 499, 762, 853, 1005, 1067, 1224, 1684
BstMWI GCNNNNNNNGC 2 cut(s) 378, 1160
BstNI CCWGG 1 cut(s) 704
BstNSI RCATGY 1 cut(s) 620
BstSCI CCNGG 1 cut(s) 702
BstSFI CTRYAG 3 cut(s) 211, 1633, 1986
BstUI CGCG 1 cut(s) 1154
BstV1I GCAGC 4 cut(s) 31, 1223, 1335, 1431
BstX2I RGATCY 3 cut(s) 347, 487, 762
BstYI RGATCY 3 cut(s) 347, 487, 762
Bsu15I ATCGAT 3 cut(s) 138, 288, 1008
BsuRI GGCC 3 cut(s) 1035, 1565, 1861
BsuTUI ATCGAT 3 cut(s) 138, 288, 1008
BtgI CCRYGG 2 cut(s) 396, 1534
BtrI CACGTC 1 cut(s) 415
BtsCI GGATG 2 cut(s) 1203, 1840
BtsIMutI CAGTG 1 cut(s) 831
BveI ACCTGC 2 cut(s) 962, 1173
Cac8I GCNNGC 4 cut(s) 255, 1235, 1615, 1939
CfoI GCGC 3 cut(s) 170, 340, 971
Cfr10I RCCGGY 2 cut(s) 1233, 1930
Cfr13I GGNCC 1 cut(s) 1034
ClaI ATCGAT 3 cut(s) 138, 288, 1008
CseI GACGC 1 cut(s) 137
Csp6I GTAC 4 cut(s) 182, 430, 1051, 2097
CviAII CATG 8 cut(s) 503, 617, 771, 1277, 1312, 1474, 1535, 1582
CviQI GTAC 4 cut(s) 182, 430, 1051, 2097
DdeI CTNAG 3 cut(s) 534, 834, 1238
DinI GGCGCC 1 cut(s) 339
DpnI GATC 9 cut(s) 349, 489, 501, 764, 855, 1007, 1069, 1226, 1686
DpnII GATC 9 cut(s) 347, 487, 499, 762, 853, 1005, 1067, 1224, 1684
DraI TTTAAA 1 cut(s) 1491
EaeI YGGCCR 1 cut(s) 1563
Eam1104I CTCTTC 3 cut(s) 795, 959, 1951
EarI CTCTTC 3 cut(s) 795, 959, 1951
EciI GGCGGA 2 cut(s) 718, 1733
Eco130I CCWWGG 2 cut(s) 1534, 1653
Eco147I AGGCCT 1 cut(s) 1861
Eco24I GRGCYC 1 cut(s) 845
Eco32I GATATC 2 cut(s) 457, 1456
Eco47III AGCGCT 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 2001
Eco88I CYCGRG 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 1034
EcoRII CCWGG 1 cut(s) 702
EcoRV GATATC 2 cut(s) 457, 1456
EcoT14I CCWWGG 2 cut(s) 1534, 1653
EcoT38I GRGCYC 1 cut(s) 845
EgeI GGCGCC 1 cut(s) 339
EheI GGCGCC 1 cut(s) 339
ErhI CCWWGG 2 cut(s) 1534, 1653
Esp3I CGTCTC 1 cut(s) 120
FaeI CATG 8 cut(s) 506, 620, 774, 1280, 1315, 1477, 1538, 1585
FatI CATG 8 cut(s) 502, 616, 770, 1276, 1311, 1473, 1534, 1581
FblI GTMKAC 2 cut(s) 513, 1632
Fnu4HI GCNGC 6 cut(s) 20, 379, 732, 1212, 1324, 1445
FokI GGATG 2 cut(s) 1210, 1827
FriOI GRGCYC 1 cut(s) 845
Fsp4HI GCNGC 6 cut(s) 20, 379, 732, 1212, 1324, 1445
FspBI CTAG 5 cut(s) 386, 1065, 1188, 1614, 1938
GlaI GCGC 3 cut(s) 169, 339, 970
GluI GCNGC 6 cut(s) 20, 379, 732, 1212, 1324, 1445
GsuI CTGGAG 1 cut(s) 686
HaeII RGCGCY 2 cut(s) 171, 341
HaeIII GGCC 3 cut(s) 1035, 1565, 1861
HapII CCGG 7 cut(s) 463, 495, 1234, 1566, 1844, 1931, 1955
HgaI GACGC 1 cut(s) 137
HhaI GCGC 3 cut(s) 170, 340, 971
Hin1I GRCGYC 1 cut(s) 338
Hin1II CATG 8 cut(s) 506, 620, 774, 1280, 1315, 1477, 1538, 1585
Hin6I GCGC 3 cut(s) 168, 338, 969
HinP1I GCGC 3 cut(s) 168, 338, 969
HincII GTYRAC 4 cut(s) 175, 877, 997, 1531
HindII GTYRAC 4 cut(s) 175, 877, 997, 1531
HindIII AAGCTT 2 cut(s) 251, 1097
HpaI GTTAAC 1 cut(s) 997
HpaII CCGG 7 cut(s) 463, 495, 1234, 1566, 1844, 1931, 1955
HphI GGTGA 4 cut(s) 3, 1941, 2015, 2044
Hpy188I TCNGA 4 cut(s) 233, 509, 747, 1248
Hpy188III TCNNGA 8 cut(s) 119, 294, 410, 833, 864, 1188, 1589, 1844
Hpy99I CGWCG 3 cut(s) 182, 416, 1924
HpyAV CCTTC 5 cut(s) 41, 232, 337, 1195, 1872
HpyCH4III ACNGT 2 cut(s) 1558, 2049
HpyCH4IV ACGT 3 cut(s) 180, 414, 879
HpyCH4V TGCA 5 cut(s) 678, 1211, 1258, 1447, 2066
HpyF10VI GCNNNNNNNGC 2 cut(s) 378, 1160
HpyF3I CTNAG 3 cut(s) 534, 834, 1238
HpySE526I ACGT 3 cut(s) 180, 414, 879
Hsp92I GRCGYC 1 cut(s) 338
Hsp92II CATG 8 cut(s) 506, 620, 774, 1280, 1315, 1477, 1538, 1585
HspAI GCGC 3 cut(s) 168, 338, 969
KasI GGCGCC 1 cut(s) 337
Kpn2I TCCGGA 1 cut(s) 1843
KroI GCCGGC 1 cut(s) 1233
KroNI GCCGGC 1 cut(s) 1235
KspAI GTTAAC 1 cut(s) 997
Kzo9I GATC 9 cut(s) 347, 487, 499, 762, 853, 1005, 1067, 1224, 1684
LguI GCTCTTC 1 cut(s) 959
LmnI GCTCC 3 cut(s) 27, 1591, 1732
Lsp1109I GCAGC 4 cut(s) 31, 1223, 1335, 1431
LweI GCATC 5 cut(s) 111, 1252, 1409, 1917, 2075
MaeI CTAG 5 cut(s) 386, 1065, 1188, 1614, 1938
MaeII ACGT 3 cut(s) 180, 414, 879
MaeIII GTNAC 4 cut(s) 241, 472, 1957, 2027
MalI GATC 9 cut(s) 349, 489, 501, 764, 855, 1007, 1069, 1226, 1686
MboI GATC 9 cut(s) 347, 487, 499, 762, 853, 1005, 1067, 1224, 1684
MflI RGATCY 3 cut(s) 347, 487, 762
MhlI GDGCHC 1 cut(s) 845
MluI ACGCGT 1 cut(s) 1152
Mly113I GGCGCC 1 cut(s) 338
MlyI GAGTC 3 cut(s) 384, 585, 1475
MmeI TCCRAC 3 cut(s) 487, 1341, 1458
MroI TCCGGA 1 cut(s) 1843
MroNI GCCGGC 1 cut(s) 1233
MseI TTAA 6 cut(s) 780, 996, 1167, 1490, 1890, 2113
MslI CAYNNNNRTG 1 cut(s) 824
MspI CCGG 7 cut(s) 463, 495, 1234, 1566, 1844, 1931, 1955
MspR9I CCNGG 1 cut(s) 704
MvaI CCWGG 1 cut(s) 704
MvnI CGCG 1 cut(s) 1154
MwoI GCNNNNNNNGC 2 cut(s) 378, 1160
NaeI GCCGGC 1 cut(s) 1235
NarI GGCGCC 1 cut(s) 338
NcoI CCATGG 1 cut(s) 1534
NdeII GATC 9 cut(s) 347, 487, 499, 762, 853, 1005, 1067, 1224, 1684
NgoMIV GCCGGC 1 cut(s) 1233
NheI GCTAGC 2 cut(s) 1613, 1937
NlaIII CATG 8 cut(s) 506, 620, 774, 1280, 1315, 1477, 1538, 1585
NlaIV GGNNCC 6 cut(s) 339, 349, 831, 1036, 1274, 1587
NmeAIII GCCGAG 2 cut(s) 864, 1501
NmuCI GTSAC 2 cut(s) 241, 472
NspI RCATGY 1 cut(s) 620
OliI CACNNNNGTG 1 cut(s) 824
PaeR7I CTCGAG 1 cut(s) 119
PceI AGGCCT 1 cut(s) 1861
PciSI GCTCTTC 1 cut(s) 959
PcsI WCGNNNNNNNCGW 2 cut(s) 135, 1005
PdiI GCCGGC 1 cut(s) 1235
PfeI GAWTC 8 cut(s) 290, 321, 545, 602, 1249, 1331, 1879, 2012
PflFI GACNNNGTC 1 cut(s) 239
PkrI GCNGC 6 cut(s) 21, 380, 733, 1213, 1325, 1446
PleI GAGTC 3 cut(s) 384, 584, 1475
PluTI GGCGCC 1 cut(s) 341
PpsI GAGTC 3 cut(s) 384, 584, 1475
Psp6I CCWGG 1 cut(s) 702
PspGI CCWGG 1 cut(s) 702
PspN4I GGNNCC 6 cut(s) 339, 349, 831, 1036, 1274, 1587
PspPI GGNCC 1 cut(s) 1034
PsuI RGATCY 3 cut(s) 347, 487, 762
PsyI GACNNNGTC 1 cut(s) 239
RsaI GTAC 4 cut(s) 183, 431, 1052, 2098
RsaNI GTAC 4 cut(s) 182, 430, 1051, 2097
RseI CAYNNNNRTG 1 cut(s) 824
SapI GCTCTTC 1 cut(s) 959
SaqAI TTAA 6 cut(s) 780, 996, 1167, 1490, 1890, 2113
SatI GCNGC 6 cut(s) 20, 379, 732, 1212, 1324, 1445
Sau3AI GATC 9 cut(s) 347, 487, 499, 762, 853, 1005, 1067, 1224, 1684
Sau96I GGNCC 1 cut(s) 1034
SchI GAGTC 3 cut(s) 384, 585, 1475
ScrFI CCNGG 1 cut(s) 704
SduI GDGCHC 1 cut(s) 845
SfaNI GCATC 5 cut(s) 111, 1252, 1409, 1917, 2075
SfcI CTRYAG 3 cut(s) 211, 1633, 1986
SfoI GGCGCC 1 cut(s) 339
Sfr274I CTCGAG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 119
SmiMI CAYNNNNRTG 1 cut(s) 824
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
SseBI AGGCCT 1 cut(s) 1861
SsiI CCGC 6 cut(s) 314, 378, 443, 729, 732, 1718
SspDI GGCGCC 1 cut(s) 337
SspMI CTAG 5 cut(s) 386, 1065, 1188, 1614, 1938
StuI AGGCCT 1 cut(s) 1861
StyD4I CCNGG 1 cut(s) 702
StyI CCWWGG 2 cut(s) 1534, 1653
TaaI ACNGT 2 cut(s) 1558, 2049
TaiI ACGT 3 cut(s) 183, 417, 882
TaqI TCGA 9 cut(s) 120, 138, 154, 202, 288, 1008, 1129, 1865, 1922
TaqII GACCGA 1 cut(s) 557
TatI WGTACW 1 cut(s) 2096
TauI GCSGC 2 cut(s) 381, 734
TfiI GAWTC 8 cut(s) 290, 321, 545, 602, 1249, 1331, 1879, 2012
Tru1I TTAA 6 cut(s) 780, 996, 1167, 1490, 1890, 2113
Tru9I TTAA 6 cut(s) 780, 996, 1167, 1490, 1890, 2113
TscAI CASTG 1 cut(s) 831
TseFI GTSAC 2 cut(s) 241, 472
TseI GCWGC 4 cut(s) 19, 1211, 1323, 1444
Tsp45I GTSAC 2 cut(s) 241, 472
TspGWI ACGGA 2 cut(s) 333, 585
TspRI CASTG 1 cut(s) 831
Tth111I GACNNNGTC 1 cut(s) 239
XapI RAATTY 4 cut(s) 423, 1486, 2071, 2108
XbaI TCTAGA 1 cut(s) 1187
XceI RCATGY 1 cut(s) 620
XcmI CCANNNNNNNNNTGG 1 cut(s) 1324
XhoI CTCGAG 1 cut(s) 119
XmiI GTMKAC 2 cut(s) 513, 1632
XspI CTAG 5 cut(s) 386, 1065, 1188, 1614, 1938
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.