Prupe.1G324000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017930
Physical Location & Seq
Forward (+)
30932371 .. 30933339
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G324000.1

Sequence Viewer

Length: 243 bp
ATGTCATCTCCAACGAGATTGTTAGGGGGTTATGTTATTCTTCTGGTTCTGCTTTTGGTGGGAATGGCATCAATGGGAAGTTGCAGCAGAGTTTTGAAGGAAGTGGAATTTAAAAGATCGATTCAAGGCATGCTTCCAAGAGGGCCAGTGCCTCCTTCGGGACCTTCTCCATGTCATAACAAGCTCAGCCCCTACCGGCACACGGAGCAATCTTATCAAGAAGATTATGTCATATGTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.8

Weight (kDa)

8.96

Isoelectric Point (pI)

88.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017930)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01379 AT2G25125
fragaria_vesca FvH4_4g32331
prunus_persica Prupe.1G324000_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0441131
rosa_multiflora Rmu_sc0006317.1_g000019
rosa_roxburghii Rroxscaffold_5G00382100
rosa_rugosa Rorug04G0331400
rosa_samantha Rh4BG396900 Rh4CG411900 Rh4DG389800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 107
AfiI CCNNNNNNNGG 2 cut(s) 158, 202
AgsI TTSAA 2 cut(s) 97, 125
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
AoxI GGCC 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 84
ApoI RAATTY 1 cut(s) 107
AspS9I GGNCC 2 cut(s) 143, 161
AvaII GGWCC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 96
BisI GCNGC 1 cut(s) 85
BlpI GCTNAGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 86
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 2 cut(s) 143, 161
BmiI GGNNCC 1 cut(s) 162
BmsI GCATC 1 cut(s) 77
Bpu1102I GCTNAGC 1 cut(s) 185
Bsa29I ATCGAT 1 cut(s) 119
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 202
Bse118I RCCGGY 1 cut(s) 195
Bse1I ACTGG 1 cut(s) 146
BseCI ATCGAT 1 cut(s) 119
BseLI CCNNNNNNNGG 2 cut(s) 158, 202
BseMII CTCAG 1 cut(s) 199
BseNI ACTGG 1 cut(s) 146
BseXI GCAGC 1 cut(s) 96
BshFI GGCC 1 cut(s) 145
BshVI ATCGAT 1 cut(s) 119
BsiSI CCGG 1 cut(s) 196
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 2 cut(s) 158, 202
BsmFI GGGAC 1 cut(s) 174
BsnI GGCC 1 cut(s) 145
Bsp143I GATC 1 cut(s) 116
Bsp1720I GCTNAGC 1 cut(s) 185
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 1 cut(s) 198
BspDI ATCGAT 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 162
BsrFI RCCGGY 1 cut(s) 195
BsrI ACTGG 1 cut(s) 146
BssAI RCCGGY 1 cut(s) 195
BssMI GATC 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 185
BstKTI GATC 1 cut(s) 119
BstMBI GATC 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNSI RCATGY 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 96
Bsu15I ATCGAT 1 cut(s) 119
BsuRI GGCC 1 cut(s) 145
BsuTUI ATCGAT 1 cut(s) 119
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 131
Cfr10I RCCGGY 1 cut(s) 195
Cfr13I GGNCC 2 cut(s) 143, 161
ClaI ATCGAT 1 cut(s) 119
CviAII CATG 2 cut(s) 130, 171
CviJI RGCY 3 cut(s) 145, 184, 189
CviKI_1 RGCY 3 cut(s) 145, 184, 189
DdeI CTNAG 1 cut(s) 185
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
DraI TTTAAA 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 161
EcoO109I RGGNCCY 1 cut(s) 161
FaeI CATG 2 cut(s) 133, 174
FaiI YATR 8 cut(s) 33, 131, 172, 177, 228, 233, 235, 241
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FaqI GGGAC 1 cut(s) 174
FatI CATG 2 cut(s) 129, 170
FauNDI CATATG 1 cut(s) 233
Fnu4HI GCNGC 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 85
GluI GCNGC 1 cut(s) 85
HaeIII GGCC 1 cut(s) 145
HapII CCGG 1 cut(s) 196
Hin1II CATG 2 cut(s) 133, 174
HinfI GANTC 1 cut(s) 121
HpaII CCGG 1 cut(s) 196
Hpy188III TCNNGA 2 cut(s) 159, 218
HpyAV CCTTC 3 cut(s) 91, 165, 174
HpyCH4V TGCA 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpyF3I CTNAG 1 cut(s) 185
Hsp92II CATG 2 cut(s) 133, 174
Kzo9I GATC 1 cut(s) 116
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 3 cut(s) 29, 159, 209
Lsp1109I GCAGC 1 cut(s) 96
LweI GCATC 1 cut(s) 77
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 2 cut(s) 32, 233
MluCI AATT 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 2 cut(s) 134, 162
MseI TTAA 1 cut(s) 111
MspI CCGG 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 205
NdeI CATATG 1 cut(s) 233
NdeII GATC 1 cut(s) 116
NlaIII CATG 2 cut(s) 133, 174
NlaIV GGNNCC 1 cut(s) 162
NspI RCATGY 1 cut(s) 133
PaeI GCATGC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 121
PkrI GCNGC 1 cut(s) 86
PpuMI RGGWCCY 1 cut(s) 161
Psp5II RGGWCCY 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 2 cut(s) 143, 161
PspPPI RGGWCCY 1 cut(s) 161
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 1 cut(s) 116
Sau96I GGNCC 2 cut(s) 143, 161
SetI ASST 2 cut(s) 166, 186
SfaNI GCATC 1 cut(s) 77
SinI GGWCC 1 cut(s) 161
SphI GCATGC 1 cut(s) 133
Sse9I AATT 1 cut(s) 107
TaqI TCGA 1 cut(s) 119
TasI AATT 1 cut(s) 107
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 1 cut(s) 153
TseI GCWGC 1 cut(s) 84
TspGWI ACGGA 1 cut(s) 218
TspRI CASTG 1 cut(s) 153
VpaK11BI GGWCC 1 cut(s) 161
XapI RAATTY 1 cut(s) 107
XceI RCATGY 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.