AT2G01510

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
229567 .. 232540
2974 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G01510.1

Sequence Viewer

Length: 1755 bp
ATGCTTGCGAAACAAACGCCATTAACAAAACAAATGCTCTCCGAGCTCTTACGAGCAAGTTCTTCAAAGCCGAAGCAGCTTAAGAAGATCCATGCGATTGTACTAAGGACAGGTTTCTCTGAAAAGAACAGTCTTTTAACTCAGCTGTTAGAGAATCTTGTAGTTATTGGTGACATGTGTTACGCACGCCAGGTGTTCGACGAAATGCACAAGCCGAGGATCTTCCTTTGGAACACTCTTTTCAAAGGGTACGTTAGAAACCAGCTCCCTTTTGAAAGTCTCCTACTTTATAAGAAAATGCGTGATCTTGGTGTCCGTCCTGATGAATTTACTTACCCGTTTGTGGTGAAAGCGATCTCTCAGCTTGGGGATTTTTCCTGTGGGTTTGCTCTTCATGCCCATGTGGTGAAATATGGTTTTGGGTGTCTTGGGATTGTTGCAACTGAGTTGGTAATGATGTACATGAAGTTTGGTGAATTGAGTTCGGCTGAGTTTTTGTTTGAGTCAATGCAAGTCAAAGATTTAGTGGCTTGGAATGCGTTTCTTGCGGTTTGTGTTCAAACGGGGAACTCCGCTATAGCTCTTGAGTATTTCAACAAAATGTGCGCGGATGCAGTTCAGTTTGATTCGTTTACTGTCGTGAGTATGCTTTCTGCTTGTGGTCAGCTAGGCTCTTTGGAGATTGGAGAAGAAATTTATGATCGTGCGAGGAAAGAAGAGATTGATTGTAACATAATAGTCGAAAATGCAAGGCTTGATATGCACTTAAAGTGTGGTAACACTGAAGCTGCCAGGGTATTATTCGAGGAAATGAAACAGAGGAATGTGGTTTCATGGAGCACAATGATTGTAGGATATGCAATGAATGGAGATAGCAGAGAAGCTTTGACATTGTTCACTACGATGCAGAATGAGGGACTTAGACCTAACTACGTGACATTTCTCGGGGTATTATCTGCTTGTAGCCACGCTGGACTAGTGAATGAAGGAAAAAGGTATTTCAGTCTCATGGTTCAGTCGAATGATAAGAATCTGGAGCCTAGAAAAGAGCATTATGCATGTATGGTTGATCTATTGGGACGCTCTGGTCTTCTAGAGGAGGCTTATGAATTTATCAAAAAGATGCCAGTGGAACCAGATACCGGTATCTGGGGAGCTTTGTTGGGTGCTTGTGCAGTTCATCGTGATATGATATTAGGGCAGAAAGTGGCAGACGTTCTTGTTGAAACAGCTCCTGATATTGGTTCATACCACGTACTACTGTCTAATATCTACGCAGCTGCTGGTAAATGGGATTGTGTTGACAAAGTAAGGAGTAAAATGAGGAAGCTGGGCACTAAAAAGGTTGCAGCCTATAGTTCTGTTGAATTCGAGGGCAAAATCCATTTTTTCAATAGAGGAGACAAATCACATCCGCAATCAAAGGCGATATATGAGAAATTGGATGAAATCTTGAAGAAGATAAGGAAAATGGGGTATGTTCCAGATACGTGTTCAGTATTTCATGATGTGGAAATGGAGGAAAAAGAATGTTCTCTGAGTCATCACAGTGAGAAGCTCGCTATTGCATTTGGACTCATTAAAGGGAGACCGGGACATCCTATACGGGTTATGAAGAACTTGAGAACCTGTGATGATTGCCACGCTTTCTCCAAGTTTGTTTCCAGTCTTACTTCGACAGAAATCATCATGCGAGACAAGAACAGGTTTCACCACTTCAGGAATGGTGTCTGCTCTTGCAAAGAGTTCTGGTGA

Protein Analysis

584

Amino Acids

66.07

Weight (kDa)

8.29

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 72 - 118 3.3e-07 PPR repeat family
PPR_2 PF13041 174 - 220 7.1e-06 PPR repeat family
PPR_2 PF13041 274 - 322 1e-09 PPR repeat family
PPR PF01535 277 - 307 4.3e-06 PPR repeat
E_motif PF20431 394 - 455 3.2e-10 E motif
Eplus_motif PF20430 467 - 488 8.6e-09 E+ motif
DYW_deaminase PF14432 492 - 584 1.1e-37 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 291
AasI GACNNNNNNGTC 1 cut(s) 1086
AccII CGCG 1 cut(s) 608
AciI CCGC 4 cut(s) 548, 573, 608, 1415
AclWI GGATC 2 cut(s) 82, 227
AcsI RAATTY 4 cut(s) 326, 693, 1109, 1367
AcuI CTGAAG 2 cut(s) 804, 1702
AfaI GTAC 4 cut(s) 102, 251, 461, 1257
AfiI CCNNNNNNNGG 4 cut(s) 343, 1142, 1149, 1241
AflII CTTAAG 1 cut(s) 80
AflIII ACRYGT 2 cut(s) 174, 1490
AgeI ACCGGT 1 cut(s) 1142
AgsI TTSAA 9 cut(s) 66, 244, 275, 560, 595, 1226, 1367, 1393, 1456
AhlI ACTAGT 1 cut(s) 976
AjnI CCWGG 2 cut(s) 189, 791
Alw21I GWGCWC 2 cut(s) 48, 842
Alw26I GTCTC 5 cut(s) 284, 1010, 1395, 1582, 1689
AlwI GGATC 2 cut(s) 82, 227
AlwNI CAGNNNCTG 2 cut(s) 1235, 1283
Ama87I CYCGRG 1 cut(s) 944
ApeKI GCWGC 5 cut(s) 76, 788, 1277, 1280, 1349
ApoI RAATTY 4 cut(s) 326, 693, 1109, 1367
AsiGI ACCGGT 1 cut(s) 1142
AspLEI GCGC 1 cut(s) 608
AsuC2I CCSGG 1 cut(s) 1593
AsuHPI GGTGA 5 cut(s) 182, 358, 418, 485, 1703
AvaI CYCGRG 1 cut(s) 944
BaeGI GKGCMC 1 cut(s) 1337
BanII GRGCYC 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 1082
Bbv12I GWGCWC 2 cut(s) 48, 842
BbvI GCAGC 5 cut(s) 88, 775, 1267, 1289, 1361
BciT130I CCWGG 2 cut(s) 191, 793
BcnI CCSGG 1 cut(s) 1593
BcoDI GTCTC 5 cut(s) 284, 1010, 1395, 1582, 1689
BcuI ACTAGT 1 cut(s) 976
BfaI CTAG 4 cut(s) 668, 977, 1041, 1094
BfmI CTRYAG 2 cut(s) 576, 1354
BfrI CTTAAG 1 cut(s) 80
BisI GCNGC 5 cut(s) 77, 789, 1278, 1281, 1350
BlsI GCNGC 5 cut(s) 78, 790, 1279, 1282, 1351
Bme1390I CCNGG 3 cut(s) 191, 793, 1593
BmeT110I CYCGRG 1 cut(s) 944
BmiI GGNNCC 2 cut(s) 1038, 1134
BmrFI CCNGG 3 cut(s) 191, 793, 1593
BmsI GCATC 3 cut(s) 601, 894, 1113
BpiI GAAGAC 1 cut(s) 1082
BpmI CTGGAG 1 cut(s) 1055
BpuEI CTTGAG 2 cut(s) 605, 1642
BpuMI CCSGG 1 cut(s) 1593
BsaAI YACGTR 3 cut(s) 934, 1255, 1491
BsaBI GATNNNNATC 1 cut(s) 1029
BsaI GGTCTC 1 cut(s) 1582
BsaJI CCNNGG 2 cut(s) 215, 792
BsaWI WCCGGW 1 cut(s) 1142
BsaXI ACNNNNNCTCC 2 cut(s) 1634, 1664
Bsc4I CCNNNNNNNGG 4 cut(s) 343, 1142, 1149, 1241
Bse118I RCCGGY 1 cut(s) 1142
Bse1I ACTGG 2 cut(s) 1127, 1665
Bse3DI GCAATG 1 cut(s) 867
Bse8I GATNNNNATC 1 cut(s) 1029
BseBI CCWGG 2 cut(s) 191, 793
BseDI CCNNGG 2 cut(s) 215, 792
BseGI GGATG 4 cut(s) 616, 1411, 1450, 1597
BseJI GATNNNNATC 1 cut(s) 1029
BseLI CCNNNNNNNGG 4 cut(s) 343, 1142, 1149, 1241
BseMI GCAATG 1 cut(s) 867
BseMII CTCAG 5 cut(s) 155, 374, 435, 480, 1529
BseNI ACTGG 2 cut(s) 1127, 1665
BseRI GAGGAG 2 cut(s) 1112, 1413
BseSI GKGCMC 1 cut(s) 1337
BseXI GCAGC 5 cut(s) 88, 775, 1267, 1289, 1361
BseYI CCCAGC 1 cut(s) 1330
BsgI GTGCAG 1 cut(s) 1194
Bsh1236I CGCG 1 cut(s) 608
BshTI ACCGGT 1 cut(s) 1142
BsiHKAI GWGCWC 2 cut(s) 48, 842
BsiHKCI CYCGRG 1 cut(s) 944
BsiSI CCGG 2 cut(s) 1143, 1592
BslFI GGGAC 3 cut(s) 930, 1092, 1608
BslI CCNNNNNNNGG 4 cut(s) 343, 1142, 1149, 1241
BsmAI GTCTC 5 cut(s) 284, 1010, 1395, 1582, 1689
BsmFI GGGAC 3 cut(s) 930, 1092, 1608
BsmI GAATGC 1 cut(s) 541
Bso31I GGTCTC 1 cut(s) 1582
BsoBI CYCGRG 1 cut(s) 944
Bsp1286I GDGCHC 3 cut(s) 48, 842, 1337
Bsp1407I TGTACA 1 cut(s) 459
Bsp143I GATC 6 cut(s) 87, 219, 304, 354, 700, 1069
BspACI CCGC 4 cut(s) 548, 573, 608, 1415
BspCNI CTCAG 5 cut(s) 154, 373, 436, 481, 1530
BspFNI CGCG 1 cut(s) 608
BspHI TCATGA 1 cut(s) 1504
BspLI GGNNCC 2 cut(s) 1038, 1134
BspPI GGATC 2 cut(s) 82, 227
BspQI GCTCTTC 1 cut(s) 396
BspTI CTTAAG 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 1582
BsrDI GCAATG 1 cut(s) 867
BsrFI RCCGGY 1 cut(s) 1142
BsrGI TGTACA 1 cut(s) 459
BsrI ACTGG 2 cut(s) 1127, 1665
BssAI RCCGGY 1 cut(s) 1142
BssECI CCNNGG 2 cut(s) 215, 792
BssMI GATC 6 cut(s) 87, 219, 304, 354, 700, 1069
Bst2UI CCWGG 2 cut(s) 191, 793
Bst4CI ACNGT 4 cut(s) 131, 637, 1263, 1550
Bst6I CTCTTC 2 cut(s) 396, 711
BstAFI CTTAAG 1 cut(s) 80
BstAUI TGTACA 1 cut(s) 459
BstBAI YACGTR 3 cut(s) 934, 1255, 1491
BstC8I GCNNGC 3 cut(s) 6, 187, 1560
BstDEI CTNAG 7 cut(s) 104, 141, 360, 444, 489, 920, 1538
BstF5I GGATG 4 cut(s) 616, 1411, 1450, 1597
BstFNI CGCG 1 cut(s) 608
BstHHI GCGC 1 cut(s) 608
BstKTI GATC 6 cut(s) 90, 222, 307, 357, 703, 1072
BstMAI GTCTC 5 cut(s) 284, 1010, 1395, 1582, 1689
BstMBI GATC 6 cut(s) 87, 219, 304, 354, 700, 1069
BstMWI GCNNNNNNNGC 6 cut(s) 43, 76, 395, 536, 545, 760
BstNI CCWGG 2 cut(s) 191, 793
BstNSI RCATGY 2 cut(s) 178, 1062
BstSCI CCNGG 3 cut(s) 189, 791, 1591
BstSFI CTRYAG 2 cut(s) 576, 1354
BstSLI GKGCMC 1 cut(s) 1337
BstUI CGCG 1 cut(s) 608
BstV1I GCAGC 5 cut(s) 88, 775, 1267, 1289, 1361
BstV2I GAAGAC 1 cut(s) 1082
BstX2I RGATCY 2 cut(s) 87, 219
BstYI RGATCY 2 cut(s) 87, 219
BtsCI GGATG 4 cut(s) 616, 1411, 1450, 1597
BtsIMutI CAGTG 3 cut(s) 780, 1134, 1555
Cac8I GCNNGC 3 cut(s) 6, 187, 1560
CaiI CAGNNNCTG 2 cut(s) 1235, 1283
CciI TCATGA 1 cut(s) 1504
CfoI GCGC 1 cut(s) 608
Cfr10I RCCGGY 1 cut(s) 1142
CseI GACGC 1 cut(s) 1089
Csp6I GTAC 4 cut(s) 101, 250, 460, 1256
CspAI ACCGGT 1 cut(s) 1142
CviQI GTAC 4 cut(s) 101, 250, 460, 1256
DdeI CTNAG 7 cut(s) 104, 141, 360, 444, 489, 920, 1538
DpnI GATC 6 cut(s) 89, 221, 306, 356, 702, 1071
DpnII GATC 6 cut(s) 87, 219, 304, 354, 700, 1069
DrdI GACNNNNNNGTC 1 cut(s) 1086
DseDI GACNNNNNNGTC 1 cut(s) 1086
Eam1104I CTCTTC 2 cut(s) 396, 711
EarI CTCTTC 2 cut(s) 396, 711
Ecl136II GAGCTC 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 48
Eco31I GGTCTC 1 cut(s) 1582
Eco53kI GAGCTC 1 cut(s) 46
Eco57I CTGAAG 2 cut(s) 804, 1702
Eco88I CYCGRG 1 cut(s) 944
EcoICRI GAGCTC 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 1367
EcoRII CCWGG 2 cut(s) 189, 791
EcoT22I ATGCAT 1 cut(s) 1060
EcoT38I GRGCYC 1 cut(s) 48
FaqI GGGAC 3 cut(s) 930, 1092, 1608
Fnu4HI GCNGC 5 cut(s) 77, 789, 1278, 1281, 1350
FokI GGATG 4 cut(s) 623, 1398, 1457, 1584
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 5 cut(s) 77, 789, 1278, 1281, 1350
FspBI CTAG 4 cut(s) 668, 977, 1041, 1094
GlaI GCGC 1 cut(s) 607
GluI GCNGC 5 cut(s) 77, 789, 1278, 1281, 1350
GsaI CCCAGC 1 cut(s) 1334
GsuI CTGGAG 1 cut(s) 1055
HapII CCGG 2 cut(s) 1143, 1592
HgaI GACGC 1 cut(s) 1089
HhaI GCGC 1 cut(s) 608
Hin6I GCGC 1 cut(s) 606
HinP1I GCGC 1 cut(s) 606
HincII GTYRAC 1 cut(s) 1303
HindII GTYRAC 1 cut(s) 1303
HindIII AAGCTT 1 cut(s) 882
HinfI GANTC 6 cut(s) 154, 503, 626, 1030, 1540, 1575
HpaII CCGG 2 cut(s) 1143, 1592
HphI GGTGA 5 cut(s) 182, 358, 418, 485, 1703
Hpy166II GTNNAC 3 cut(s) 633, 897, 1303
Hpy188I TCNGA 3 cut(s) 43, 121, 1539
Hpy8I GTNNAC 3 cut(s) 633, 897, 1303
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 1 cut(s) 980
HpyCH4III ACNGT 4 cut(s) 131, 637, 1263, 1550
HpyCH4IV ACGT 5 cut(s) 252, 933, 1215, 1254, 1490
HpyF10VI GCNNNNNNNGC 6 cut(s) 43, 76, 395, 536, 545, 760
HpyF3I CTNAG 7 cut(s) 104, 141, 360, 444, 489, 920, 1538
HpySE526I ACGT 5 cut(s) 252, 933, 1215, 1254, 1490
HspAI GCGC 1 cut(s) 606
Kzo9I GATC 6 cut(s) 87, 219, 304, 354, 700, 1069
LguI GCTCTTC 1 cut(s) 396
LmnI GCTCC 5 cut(s) 270, 837, 1036, 1154, 1237
Lsp1109I GCAGC 5 cut(s) 88, 775, 1267, 1289, 1361
LweI GCATC 3 cut(s) 601, 894, 1113
MaeI CTAG 4 cut(s) 668, 977, 1041, 1094
MaeII ACGT 5 cut(s) 252, 933, 1215, 1254, 1490
MaeIII GTNAC 5 cut(s) 170, 179, 728, 776, 934
MalI GATC 6 cut(s) 89, 221, 306, 356, 702, 1071
MboI GATC 6 cut(s) 87, 219, 304, 354, 700, 1069
MflI RGATCY 2 cut(s) 87, 219
MhlI GDGCHC 3 cut(s) 48, 842, 1337
MluCI AATT 6 cut(s) 326, 476, 693, 1109, 1367, 1439
MlyI GAGTC 3 cut(s) 512, 1549, 1569
Mph1103I ATGCAT 1 cut(s) 1060
MseI TTAA 5 cut(s) 23, 81, 137, 767, 1581
MslI CAYNNNNRTG 3 cut(s) 399, 902, 1548
MspA1I CMGCKG 2 cut(s) 145, 1280
MspCI CTTAAG 1 cut(s) 80
MspI CCGG 2 cut(s) 1143, 1592
MspR9I CCNGG 3 cut(s) 191, 793, 1593
Mva1269I GAATGC 1 cut(s) 541
MvaI CCWGG 2 cut(s) 191, 793
MvnI CGCG 1 cut(s) 608
MwoI GCNNNNNNNGC 6 cut(s) 43, 76, 395, 536, 545, 760
NciI CCSGG 1 cut(s) 1593
NdeII GATC 6 cut(s) 87, 219, 304, 354, 700, 1069
NlaIV GGNNCC 2 cut(s) 1038, 1134
NmeAIII GCCGAG 1 cut(s) 240
NmuCI GTSAC 2 cut(s) 170, 934
NsiI ATGCAT 1 cut(s) 1060
NspI RCATGY 2 cut(s) 178, 1062
PagI TCATGA 1 cut(s) 1504
PciI ACATGT 1 cut(s) 174
PciSI GCTCTTC 1 cut(s) 396
PctI GAATGC 1 cut(s) 541
PfeI GAWTC 3 cut(s) 154, 626, 1030
PinAI ACCGGT 1 cut(s) 1142
PkrI GCNGC 5 cut(s) 78, 790, 1279, 1282, 1351
PleI GAGTC 3 cut(s) 511, 1548, 1569
PpsI GAGTC 3 cut(s) 511, 1548, 1569
Ppu21I YACGTR 3 cut(s) 934, 1255, 1491
PscI ACATGT 1 cut(s) 174
PsiI TTATAA 1 cut(s) 291
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 2 cut(s) 189, 791
PspFI CCCAGC 1 cut(s) 1330
PspGI CCWGG 2 cut(s) 189, 791
PspN4I GGNNCC 2 cut(s) 1038, 1134
PstNI CAGNNNCTG 2 cut(s) 1235, 1283
PsuI RGATCY 2 cut(s) 87, 219
PvuII CAGCTG 2 cut(s) 145, 1280
RsaI GTAC 4 cut(s) 102, 251, 461, 1257
RsaNI GTAC 4 cut(s) 101, 250, 460, 1256
RseI CAYNNNNRTG 3 cut(s) 399, 902, 1548
SacI GAGCTC 1 cut(s) 48
SapI GCTCTTC 1 cut(s) 396
SaqAI TTAA 5 cut(s) 23, 81, 137, 767, 1581
SatI GCNGC 5 cut(s) 77, 789, 1278, 1281, 1350
Sau3AI GATC 6 cut(s) 87, 219, 304, 354, 700, 1069
SchI GAGTC 3 cut(s) 512, 1549, 1569
ScrFI CCNGG 3 cut(s) 191, 793, 1593
SduI GDGCHC 3 cut(s) 48, 842, 1337
SfaNI GCATC 3 cut(s) 601, 894, 1113
SfcI CTRYAG 2 cut(s) 576, 1354
SmiMI CAYNNNNRTG 3 cut(s) 399, 902, 1548
SmlI CTYRAG 3 cut(s) 80, 584, 1621
SmoI CTYRAG 3 cut(s) 80, 584, 1621
SpeI ACTAGT 1 cut(s) 976
Sse9I AATT 6 cut(s) 326, 476, 693, 1109, 1367, 1439
SsiI CCGC 4 cut(s) 548, 573, 608, 1415
SspMI CTAG 4 cut(s) 668, 977, 1041, 1094
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 3 cut(s) 189, 791, 1591
TaaI ACNGT 4 cut(s) 131, 637, 1263, 1550
TaiI ACGT 5 cut(s) 255, 936, 1218, 1257, 1493
TaqI TCGA 6 cut(s) 198, 741, 804, 1019, 1371, 1676
TasI AATT 6 cut(s) 326, 476, 693, 1109, 1367, 1439
TatI WGTACW 2 cut(s) 100, 459
TfiI GAWTC 3 cut(s) 154, 626, 1030
Tru1I TTAA 5 cut(s) 23, 81, 137, 767, 1581
Tru9I TTAA 5 cut(s) 23, 81, 137, 767, 1581
TscAI CASTG 3 cut(s) 787, 1134, 1555
TseFI GTSAC 2 cut(s) 170, 934
TseI GCWGC 5 cut(s) 76, 788, 1277, 1280, 1349
Tsp45I GTSAC 2 cut(s) 170, 934
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 3 cut(s) 787, 1134, 1555
Vha464I CTTAAG 1 cut(s) 80
XapI RAATTY 4 cut(s) 326, 693, 1109, 1367
XbaI TCTAGA 1 cut(s) 1093
XceI RCATGY 2 cut(s) 178, 1062
XcmI CCANNNNNNNNNTGG 1 cut(s) 1721
XspI CTAG 4 cut(s) 668, 977, 1041, 1094
Zsp2I ATGCAT 1 cut(s) 1060
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.