Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000353.1

Orthogroup ID

OG0013352

Physical Location & Seq

Genomic Coordinates Forward (+)

92555 .. 94396

Gene Structure 1842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000353.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1842 bp

atgctgcaagtttgcagaagacattccaagctgtgcttagctctctcactcaacccaatatcccagttctcctctctggaccagacccgaaaacccgaaccgattcgtctgaccattaccaagcaagccttcaccgcccagttgcaatcatgctcctcacacccaaaccagctcaagcaaatccacgccctcattctcaccaccggaatctccatcaagaacagcctcctcacccatctcatcaccgccttcataatgttgggcgacgtttcctatgcgcgtaaggtgttcgacgaaatgcacaagccaagagtgtttctatggaacaccattatcaaagcgtacgttaaataccaagactttatggaggctgcggctgtgtacagaagaatgaagcgtctgggtgttcgccctgacgactttacgtacacgtttgtggtcaaggcgtgtgctcagctgccgtgggccgggtgggctgtcgcggcgcacgcggtgaaatatgggttggagtttgttgttgaagtgaggactgagttggttataatgtgtgtgaaatatggggagttgggtttggcggattttttgttcggaactatggtcgagagagatttagttgcttggaatgcttttgttgctgcttgtgtgcagagtggacatgctgcaaaggctcttcatttgtttcgccggatgcgtgtggctggagtggagcctgatgctgttacggttgtgagtgctttttcggcttgtggtcagttagggtgtttggagactggggaagagattgatggggttatgagacaatgtgggattgtttgcaatgtaattgttgacaatgcgcggcttgatatgtatgtcaaatgcggtagcgtggacatggctgaggctttgtttgaggatatgcatcagagaaatgttatttcctggagcactatggtattaggttatgcaataaatggggagagccgcaaggcattggatatgttttcgtggatgcaaaagcgaggagttgctcccaaccatgtcacgtatctaggagttttatccgcatgcagccatgctgggctggtgaatgaaggcaaatctcattttaggcgcatggtgcaagctggtgacaagaatattcaaccgaaaatagagcactatgcttgcatggttgatctccttggtcggtcaggacatcttgaggaggcttataacttcataagaagtatgccaattgaactcgataccggggtgtggggagctttattgggtgcgtgtgcaatccaccaaaacgttgaactgggtcagcatgtagctgatttgctttttgaattagctcctgctaatggttcatatcatgtcttgatgtcaaacatgtatgcggctgctggaagatgggactgtgttgacaaggtgaggctcaaaatgcgaaaaggaggtgttaagaaagtagctgcctatagctcagtagagtttaatggaaaaatccatatattttatggtggtaacagattgcatccagaatcatcagaaatatatgaaaaattggaggatttattaagacaagtgaagaatataggttacactccaaatatcacctctgtgtttcatgatgtgggcacagaggaaaaggaagccacactcagtcatcacagtgaaaagcttgccattgcatttagtcttctaaatctacagcctgaatgccccattagagtggtgaagaatttacgaatctgtgatgactgccacagtttctgtaaatttgtctccgaagcgaccaaaagggtgattatcatgagagataaaatccgttttcatcattttagaaatggtgagtgttcttgcaacaacttttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

613

Amino Acids

68.85

Weight (kDa)

8.61

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013352)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01510 AT2G01510
fragaria_vesca	FvH4_4g32680
malus_domestica	MD13G1023400.v1.1
prunus_persica	Prupe.1G327100_v2.0.a1 Prupe.1G327100_v2.0.a1 Prupe.1G327100_v2.0.a1 Prupe.1G327100_v2.0.a1 Prupe.1G327100_v2.0.a1 Prupe.1G327100_v2.0.a1
pyrus_communis	pycom13g02200
rosa_chinensis	RchiOBHm_Chr4g0441601
rosa_laevigata	RLG00000006082
rosa_multiflora	Rmu_co8487175.1_g000001 Rmu_sc0000353.1_g000025
rosa_rugosa	Rorug04G0335000
rosa_samantha	Rh4BG400500
rosa_wichuraiana	Rw4G033370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	542, 1194
AccII	CGCG	4 cut(s)	280, 482, 491, 838
AclI	AACGTT	1 cut(s)	1275
AcsI	RAATTY	2 cut(s)	1705, 1742
AdeI	CACNNNGTG	1 cut(s)	493
AfaI	GTAC	3 cut(s)	344, 383, 428
AfiI	CCNNNNNNNGG	3 cut(s)	467, 1236, 1328
AflIII	ACRYGT	2 cut(s)	429, 1356
AgsI	TTSAA	5 cut(s)	521, 1124, 1220, 1280, 1313
AjnI	CCWGG	1 cut(s)	920
AjuI	GAANNNNNNNTTGG	4 cut(s)	113, 145, 488, 520
AleI	CACNNNNGTG	2 cut(s)	434, 1583
AloI	GAACNNNNNNTCC	2 cut(s)	569, 601
Alw21I	GWGCWC	3 cut(s)	454, 929, 1140
Alw26I	GTCTC	3 cut(s)	761, 790, 1753
AlwNI	CAGNNNCTG	1 cut(s)	1737
AoxI	GGCC	1 cut(s)	465
ApeKI	GCWGC	8 cut(s)	4, 371, 457, 635, 659, 1050, 1367, 1436
ApoI	RAATTY	2 cut(s)	1705, 1742
Asp700I	GAANNNNTTC	2 cut(s)	22, 102
AspLEI	GCGC	4 cut(s)	280, 487, 838, 1095
AspS9I	GGNCC	2 cut(s)	79, 465
AsuC2I	CCSGG	2 cut(s)	469, 1231
AvaII	GGWCC	1 cut(s)	79
BaeGI	GKGCMC	1 cut(s)	1604
BaeI	ACNNNNGTAYC	2 cut(s)	1218, 1251
BbsI	GAAGAC	2 cut(s)	25, 1655
Bbv12I	GWGCWC	3 cut(s)	454, 929, 1140
BbvCI	CCTCAGC	1 cut(s)	879
BbvI	GCAGC	7 cut(s)	358, 444, 622, 646, 1062, 1354, 1423
BccI	CCATC	4 cut(s)	221, 243, 779, 1371
BceAI	ACGGC	1 cut(s)	445
BciT130I	CCWGG	1 cut(s)	922
BcnI	CCSGG	2 cut(s)	469, 1231
BcoDI	GTCTC	3 cut(s)	761, 790, 1753
BfaI	CTAG	1 cut(s)	1031
BfmI	CTRYAG	2 cut(s)	1441, 1673
BglI	GCCNNNNNGGC	1 cut(s)	473
BlpI	GCTNAGC	2 cut(s)	37, 453
Bme1390I	CCNGG	3 cut(s)	469, 922, 1231
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	2 cut(s)	79, 465
BmiI	GGNNCC	1 cut(s)	708
BmrFI	CCNGG	3 cut(s)	469, 922, 1231
BmrI	ACTGGG	4 cut(s)	58, 133, 780, 1292
BmsI	GCATC	5 cut(s)	678, 703, 910, 981, 1507
BmuI	ACTGGG	4 cut(s)	58, 133, 780, 1292
BpiI	GAAGAC	2 cut(s)	25, 1655
BpmI	CTGGAG	2 cut(s)	720, 943
Bpu10I	CCTNAGC	1 cut(s)	879
Bpu1102I	GCTNAGC	2 cut(s)	37, 453
BpuEI	CTTGAG	2 cut(s)	158, 1202
BpuMI	CCSGG	2 cut(s)	469, 1231
BsaAI	YACGTR	2 cut(s)	426, 1026
BsaBI	GATNNNNATC	1 cut(s)	900
BsaJI	CCNNGG	3 cut(s)	461, 1162, 1230
BsaWI	WCCGGW	1 cut(s)	203
Bsc4I	CCNNNNNNNGG	3 cut(s)	467, 1236, 1328
Bse1I	ACTGG	4 cut(s)	64, 139, 775, 1287
Bse3DI	GCAATG	2 cut(s)	823, 1650
Bse8I	GATNNNNATC	1 cut(s)	900
BseBI	CCWGG	1 cut(s)	922
BseDI	CCNNGG	3 cut(s)	461, 1162, 1230
BseGI	GGATG	3 cut(s)	693, 996, 1498
BseJI	GATNNNNATC	1 cut(s)	900
BseLI	CCNNNNNNNGG	3 cut(s)	467, 1236, 1328
BseMI	GCAATG	2 cut(s)	823, 1650
BseMII	CTCAG	5 cut(s)	467, 522, 870, 1461, 1639
BseNI	ACTGG	4 cut(s)	64, 139, 775, 1287
BseRI	GAGGAG	5 cut(s)	61, 145, 218, 1017, 1199
BseSI	GKGCMC	1 cut(s)	1604
BseXI	GCAGC	7 cut(s)	358, 444, 622, 646, 1062, 1354, 1423
BseYI	CCCAGC	1 cut(s)	1058
BsgI	GTGCAG	1 cut(s)	665
Bsh1236I	CGCG	4 cut(s)	280, 482, 491, 838
BshFI	GGCC	1 cut(s)	467
BsiHKAI	GWGCWC	3 cut(s)	454, 929, 1140
BsiSI	CCGG	4 cut(s)	204, 468, 685, 1230
BsiWI	CGTACG	1 cut(s)	342
BslFI	GGGAC	1 cut(s)	1394
BslI	CCNNNNNNNGG	3 cut(s)	467, 1236, 1328
BsmAI	GTCTC	3 cut(s)	761, 790, 1753
BsmFI	GGGAC	1 cut(s)	1394
BsmI	GAATGC	2 cut(s)	628, 1688
BsnI	GGCC	1 cut(s)	467
Bsp1286I	GDGCHC	4 cut(s)	454, 929, 1140, 1604
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	1 cut(s)	1156
Bsp1720I	GCTNAGC	2 cut(s)	37, 453
BspANI	GGCC	1 cut(s)	467
BspCNI	CTCAG	5 cut(s)	466, 523, 871, 1460, 1638
BspFNI	CGCG	4 cut(s)	280, 482, 491, 838
BspHI	TCATGA	2 cut(s)	1591, 1776
BspLI	GGNNCC	1 cut(s)	708
BspQI	GCTCTTC	1 cut(s)	675
BsrDI	GCAATG	2 cut(s)	823, 1650
BsrGI	TGTACA	1 cut(s)	381
BsrI	ACTGG	4 cut(s)	64, 139, 775, 1287
BssECI	CCNNGG	3 cut(s)	461, 1162, 1230
BssMI	GATC	1 cut(s)	1156
BssT1I	CCWWGG	1 cut(s)	1162
Bst2UI	CCWGG	1 cut(s)	922
Bst4CI	ACNGT	4 cut(s)	724, 1385, 1637, 1733
Bst6I	CTCTTC	2 cut(s)	675, 771
BstAUI	TGTACA	1 cut(s)	381
BstBAI	YACGTR	2 cut(s)	426, 1026
BstC8I	GCNNGC	6 cut(s)	126, 489, 1048, 1104, 1147, 1647
BstDEI	CTNAG	6 cut(s)	37, 453, 531, 879, 1447, 1625
BstDSI	CCRYGG	1 cut(s)	461
BstF5I	GGATG	3 cut(s)	693, 996, 1498
BstFNI	CGCG	4 cut(s)	280, 482, 491, 838
BstHHI	GCGC	4 cut(s)	280, 487, 838, 1095
BstKTI	GATC	1 cut(s)	1159
BstMAI	GTCTC	3 cut(s)	761, 790, 1753
BstMBI	GATC	1 cut(s)	1156
BstNI	CCWGG	1 cut(s)	922
BstNSI	RCATGY	4 cut(s)	659, 1050, 1295, 1360
BstSCI	CCNGG	3 cut(s)	467, 920, 1229
BstSFI	CTRYAG	2 cut(s)	1441, 1673
BstSLI	GKGCMC	1 cut(s)	1604
BstSNI	TACGTA	1 cut(s)	426
BstUI	CGCG	4 cut(s)	280, 482, 491, 838
BstV1I	GCAGC	7 cut(s)	358, 444, 622, 646, 1062, 1354, 1423
BstV2I	GAAGAC	2 cut(s)	25, 1655
BstXI	CCANNNNNNTGG	1 cut(s)	1696
BsuRI	GGCC	1 cut(s)	467
BtgI	CCRYGG	1 cut(s)	461
BtsCI	GGATG	3 cut(s)	693, 996, 1498
BtsIMutI	CAGTG	1 cut(s)	1642
Cac8I	GCNNGC	6 cut(s)	126, 489, 1048, 1104, 1147, 1647
CaiI	CAGNNNCTG	1 cut(s)	1737
CciI	TCATGA	2 cut(s)	1591, 1776
CfoI	GCGC	4 cut(s)	280, 487, 838, 1095
Cfr13I	GGNCC	2 cut(s)	79, 465
CseI	GACGC	1 cut(s)	386
Csp6I	GTAC	3 cut(s)	343, 382, 427
CviQI	GTAC	3 cut(s)	343, 382, 427
DdeI	CTNAG	6 cut(s)	37, 453, 531, 879, 1447, 1625
DpnI	GATC	1 cut(s)	1158
DpnII	GATC	1 cut(s)	1156
DraIII	CACNNNGTG	1 cut(s)	493
Eam1104I	CTCTTC	2 cut(s)	675, 771
EarI	CTCTTC	2 cut(s)	675, 771
EciI	GGCGGA	1 cut(s)	590
Eco105I	TACGTA	1 cut(s)	426
Eco130I	CCWWGG	1 cut(s)	1162
Eco47I	GGWCC	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	920
EcoT14I	CCWWGG	1 cut(s)	1162
EcoT22I	ATGCAT	1 cut(s)	903
ErhI	CCWWGG	1 cut(s)	1162
FalI	AAGNNNNNCTT	4 cut(s)	20, 52, 113, 145
FaqI	GGGAC	1 cut(s)	1394
FokI	GGATG	3 cut(s)	700, 1003, 1485
FspBI	CTAG	1 cut(s)	1031
GlaI	GCGC	4 cut(s)	279, 486, 837, 1094
GsaI	CCCAGC	1 cut(s)	1062
GsuI	CTGGAG	2 cut(s)	720, 943
HaeIII	GGCC	1 cut(s)	467
HapII	CCGG	4 cut(s)	204, 468, 685, 1230
HgaI	GACGC	1 cut(s)	386
HhaI	GCGC	4 cut(s)	280, 487, 838, 1095
Hin6I	GCGC	4 cut(s)	278, 485, 836, 1093
HinP1I	GCGC	4 cut(s)	278, 485, 836, 1093
HincII	GTYRAC	2 cut(s)	829, 1390
HindII	GTYRAC	2 cut(s)	829, 1390
HindIII	AAGCTT	1 cut(s)	1643
HinfI	GANTC	4 cut(s)	103, 207, 1505, 1713
HpaII	CCGG	4 cut(s)	204, 468, 685, 1230
Hpy166II	GTNNAC	6 cut(s)	382, 429, 653, 829, 871, 1390
Hpy188I	TCNGA	5 cut(s)	111, 590, 906, 1513, 1753
Hpy188III	TCNNGA	9 cut(s)	77, 217, 601, 1173, 1181, 1345, 1502, 1592, 1777
Hpy8I	GTNNAC	6 cut(s)	382, 429, 653, 829, 871, 1390
Hpy99I	CGWCG	2 cut(s)	269, 296
HpyAV	CCTTC	3 cut(s)	139, 259, 1067
HpyCH4III	ACNGT	4 cut(s)	724, 1385, 1637, 1733
HpyCH4IV	ACGT	6 cut(s)	267, 345, 425, 431, 1025, 1275
HpyF3I	CTNAG	6 cut(s)	37, 453, 531, 879, 1447, 1625
HpySE526I	ACGT	6 cut(s)	267, 345, 425, 431, 1025, 1275
HspAI	GCGC	4 cut(s)	278, 485, 836, 1093
Kzo9I	GATC	1 cut(s)	1156
LguI	GCTCTTC	1 cut(s)	675
LmnI	GCTCC	6 cut(s)	158, 706, 924, 1015, 1241, 1324
Lsp1109I	GCAGC	7 cut(s)	358, 444, 622, 646, 1062, 1354, 1423
LweI	GCATC	5 cut(s)	678, 703, 910, 981, 1507
MaeI	CTAG	1 cut(s)	1031
MaeII	ACGT	6 cut(s)	267, 345, 425, 431, 1025, 1275
MaeIII	GTNAC	5 cut(s)	718, 1021, 1109, 1487, 1562
MalI	GATC	1 cut(s)	1158
MboI	GATC	1 cut(s)	1156
MboII	GAAGA	8 cut(s)	30, 399, 662, 788, 1386, 1564, 1655, 1714
MfeI	CAATTG	1 cut(s)	1215
MhlI	GDGCHC	4 cut(s)	454, 929, 1140, 1604
MluCI	AATT	6 cut(s)	822, 1215, 1313, 1526, 1705, 1742
MmeI	TCCRAC	1 cut(s)	486
Mph1103I	ATGCAT	1 cut(s)	903
MroXI	GAANNNNTTC	2 cut(s)	22, 102
MseI	TTAA	4 cut(s)	348, 1425, 1458, 1541
MslI	CAYNNNNRTG	4 cut(s)	434, 1583, 1635, 1694
MspA1I	CMGCKG	1 cut(s)	457
MspI	CCGG	4 cut(s)	204, 468, 685, 1230
MspR9I	CCNGG	3 cut(s)	469, 922, 1231
MunI	CAATTG	1 cut(s)	1215
Mva1269I	GAATGC	2 cut(s)	628, 1688
MvaI	CCWGG	1 cut(s)	922
MvnI	CGCG	4 cut(s)	280, 482, 491, 838
NciI	CCSGG	2 cut(s)	469, 1231
NdeII	GATC	1 cut(s)	1156
NlaIV	GGNNCC	1 cut(s)	708
NmuCI	GTSAC	2 cut(s)	1021, 1109
NsiI	ATGCAT	1 cut(s)	903
NspI	RCATGY	4 cut(s)	659, 1050, 1295, 1360
OliI	CACNNNNGTG	2 cut(s)	434, 1583
PaeI	GCATGC	1 cut(s)	1050
PagI	TCATGA	2 cut(s)	1591, 1776
PciI	ACATGT	1 cut(s)	1356
PciSI	GCTCTTC	1 cut(s)	675
PcsI	WCGNNNNNNNCGW	1 cut(s)	688
PctI	GAATGC	2 cut(s)	628, 1688
PdmI	GAANNNNTTC	2 cut(s)	22, 102
PfeI	GAWTC	4 cut(s)	103, 207, 1505, 1713
Pfl23II	CGTACG	1 cut(s)	342
PfoI	TCCNGGA	1 cut(s)	920
Ppu21I	YACGTR	2 cut(s)	426, 1026
PscI	ACATGT	1 cut(s)	1356
PsiI	TTATAA	2 cut(s)	542, 1194
Psp1406I	AACGTT	1 cut(s)	1275
Psp6I	CCWGG	1 cut(s)	920
PspFI	CCCAGC	1 cut(s)	1058
PspGI	CCWGG	1 cut(s)	920
PspLI	CGTACG	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	708
PspPI	GGNCC	2 cut(s)	79, 465
PstNI	CAGNNNCTG	1 cut(s)	1737
PvuII	CAGCTG	1 cut(s)	457
RsaI	GTAC	3 cut(s)	344, 383, 428
RsaNI	GTAC	3 cut(s)	343, 382, 427
RseI	CAYNNNNRTG	4 cut(s)	434, 1583, 1635, 1694
SapI	GCTCTTC	1 cut(s)	675
SaqAI	TTAA	4 cut(s)	348, 1425, 1458, 1541
Sau3AI	GATC	1 cut(s)	1156
Sau96I	GGNCC	2 cut(s)	79, 465
ScrFI	CCNGG	3 cut(s)	469, 922, 1231
SduI	GDGCHC	4 cut(s)	454, 929, 1140, 1604
SfaNI	GCATC	5 cut(s)	678, 703, 910, 981, 1507
SfcI	CTRYAG	2 cut(s)	1441, 1673
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	4 cut(s)	434, 1583, 1635, 1694
SmlI	CTYRAG	2 cut(s)	173, 1181
SmoI	CTYRAG	2 cut(s)	173, 1181
SnaBI	TACGTA	1 cut(s)	426
SphI	GCATGC	1 cut(s)	1050
Sse9I	AATT	6 cut(s)	822, 1215, 1313, 1526, 1705, 1742
SspI	AATATT	1 cut(s)	1120
SspMI	CTAG	1 cut(s)	1031
StyD4I	CCNGG	3 cut(s)	467, 920, 1229
StyI	CCWWGG	1 cut(s)	1162
TaaI	ACNGT	4 cut(s)	724, 1385, 1637, 1733
TaiI	ACGT	6 cut(s)	270, 348, 428, 434, 1028, 1278
TaqI	TCGA	3 cut(s)	291, 600, 1224
TaqII	GACCGA	1 cut(s)	1158
TasI	AATT	6 cut(s)	822, 1215, 1313, 1526, 1705, 1742
TatI	WGTACW	1 cut(s)	381
TauI	GCSGC	5 cut(s)	377, 485, 841, 966, 1367
TfiI	GAWTC	4 cut(s)	103, 207, 1505, 1713
Tru1I	TTAA	4 cut(s)	348, 1425, 1458, 1541
Tru9I	TTAA	4 cut(s)	348, 1425, 1458, 1541
TscAI	CASTG	1 cut(s)	1642
TseFI	GTSAC	2 cut(s)	1021, 1109
TseI	GCWGC	8 cut(s)	4, 371, 457, 635, 659, 1050, 1367, 1436
Tsp45I	GTSAC	2 cut(s)	1021, 1109
TspDTI	ATGAA	9 cut(s)	241, 407, 662, 1086, 1189, 1323, 1536, 1580, 1787
TspGWI	ACGGA	1 cut(s)	1781
TspRI	CASTG	1 cut(s)	1642
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	2 cut(s)	1705, 1742
XceI	RCATGY	4 cut(s)	659, 1050, 1295, 1360
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1478
XmnI	GAANNNNTTC	2 cut(s)	22, 102
XspI	CTAG	1 cut(s)	1031
Zsp2I	ATGCAT	1 cut(s)	903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.