AT2G01818

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017081
Physical Location & Seq
Reverse (-)
353344 .. 355594
2251 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G01818.1

Sequence Viewer

Length: 669 bp
ATGAATCTGAGTGAGAAGAGAAGAAGTGAAGAAGTTTGGATTGAAACACTACTGAACTCAGAGTTCTTTGGGATATGTATGAATCATAAGTATCTTAGAAAGAACGAGAAGAATGTGTTTTGCATTGATTGTAATGTGGAAATATGCAGACATTGTTGTAACACAGTTACAGATTCTCATTTCCTCCATCGTCGTCTTCAGATCTGCAAATACGTTTACCAAGATGTTATTCGTCTCCTCGAAATCCAAAACTACTTCGACTGTTCCGAGATTCAGACATATAAAATAAATGGAGAGAAGGCAATACATTTGAATTCAAGGCCACAAGCAAAAGATGCAAGACCTTCAACAAAAGCCAAGAATGGTGCTTCATGTGTGACTTGTAAAAGATATATTCAGGATCATCCTAATCTTTTTTGCTCTATCTCCTGCAAGATTTCAACTCCTTCAAAAAAGCATAAATTTTGTTTTTCTCCAAAACTAGAACAGAGTGTTTTGGAGAAAGAACACTCTACTCAAGAAGGAAGCTTAGAAGAAAAAAAATCGTGCACATCGTCCCTCACTGATGTTTCAGAAGATTCTGAAGTTTTATTGAGTGATTTTTCATTTAGACCACTCTTGAGAATACTCAAGAGAAAAGGAATTTCTCGAAGATCTCCTTTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ

Protein Analysis

222

Amino Acids

25.9

Weight (kDa)

8.88

Isoelectric Point (pI)

67.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 70 - 146 4.1e-26 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01818 AT2G01818
fragaria_vesca FvH4_4g33250
malus_domestica MD13G1017800.v1.1 MD16G1015800.v1.1
prunus_persica Prupe.1G335800_v2.0.a1
pyrus_communis pycom16g01470
rosa_chinensis RchiOBHm_Chr4g0442401
rosa_laevigata RLG00000006013
rosa_samantha Rh4AG392500 Rh4CG421300 Rh4DG399300
rosa_wichuraiana Rw4G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 408
AcsI RAATTY 3 cut(s) 313, 461, 642
AcuI CTGAAG 2 cut(s) 182, 603
AgsI TTSAA 6 cut(s) 44, 313, 318, 348, 441, 450
AjuI GAANNNNNNNTTGG 2 cut(s) 213, 245
AluBI AGCT 1 cut(s) 528
AluI AGCT 1 cut(s) 528
Alw21I GWGCWC 1 cut(s) 551
Alw26I GTCTC 1 cut(s) 239
Alw44I GTGCAC 1 cut(s) 547
AlwI GGATC 1 cut(s) 408
AoxI GGCC 1 cut(s) 320
ApaLI GTGCAC 1 cut(s) 547
ApoI RAATTY 3 cut(s) 313, 461, 642
BaeGI GKGCMC 1 cut(s) 551
BbsI GAAGAC 1 cut(s) 188
Bbv12I GWGCWC 1 cut(s) 551
BccI CCATC 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 239
BfaI CTAG 1 cut(s) 482
BglII AGATCT 2 cut(s) 201, 653
BmsI GCATC 1 cut(s) 325
BpiI GAAGAC 1 cut(s) 188
BpuEI CTTGAG 3 cut(s) 501, 614, 640
BseGI GGATG 1 cut(s) 403
BseMII CTCAG 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 227
BseSI GKGCMC 1 cut(s) 551
BshFI GGCC 1 cut(s) 322
BsiHKAI GWGCWC 1 cut(s) 551
BslFI GGGAC 1 cut(s) 541
BsmAI GTCTC 1 cut(s) 239
BsmBI CGTCTC 1 cut(s) 239
BsmFI GGGAC 1 cut(s) 541
BsnI GGCC 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 551
Bsp143I GATC 3 cut(s) 201, 400, 653
BspANI GGCC 1 cut(s) 322
BspCNI CTCAG 1 cut(s) 71
BspPI GGATC 1 cut(s) 408
BssMI GATC 3 cut(s) 201, 400, 653
Bst4CI ACNGT 2 cut(s) 166, 263
Bst6I CTCTTC 1 cut(s) 11
BstAPI GCANNNNNTGC 1 cut(s) 335
BstDEI CTNAG 4 cut(s) 8, 58, 95, 529
BstF5I GGATG 1 cut(s) 403
BstKTI GATC 3 cut(s) 204, 403, 656
BstMAI GTCTC 1 cut(s) 239
BstMBI GATC 3 cut(s) 201, 400, 653
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstSLI GKGCMC 1 cut(s) 551
BstV2I GAAGAC 1 cut(s) 188
BstX2I RGATCY 2 cut(s) 201, 653
BstYI RGATCY 2 cut(s) 201, 653
BsuRI GGCC 1 cut(s) 322
BtsCI GGATG 1 cut(s) 403
BtsIMutI CAGTG 1 cut(s) 561
CviAII CATG 1 cut(s) 372
CviJI RGCY 3 cut(s) 322, 356, 528
CviKI_1 RGCY 3 cut(s) 322, 356, 528
DdeI CTNAG 4 cut(s) 8, 58, 95, 529
DpnI GATC 3 cut(s) 203, 402, 655
DpnII GATC 3 cut(s) 201, 400, 653
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Eco57I CTGAAG 2 cut(s) 182, 603
EcoRI GAATTC 1 cut(s) 313
Esp3I CGTCTC 1 cut(s) 239
FaeI CATG 1 cut(s) 375
FaiI YATR 9 cut(s) 76, 80, 87, 145, 280, 282, 373, 393, 459
FalI AAGNNNNNCTT 1 cut(s) 643
FaqI GGGAC 1 cut(s) 541
FatI CATG 1 cut(s) 371
FokI GGATG 1 cut(s) 390
FspBI CTAG 1 cut(s) 482
HaeIII GGCC 1 cut(s) 322
Hin1II CATG 1 cut(s) 375
HindIII AAGCTT 1 cut(s) 526
HinfI GANTC 5 cut(s) 4, 82, 173, 271, 578
Hpy166II GTNNAC 2 cut(s) 217, 549
Hpy188I TCNGA 7 cut(s) 9, 61, 201, 268, 276, 574, 583
Hpy188III TCNNGA 5 cut(s) 398, 518, 619, 631, 648
Hpy8I GTNNAC 2 cut(s) 217, 549
Hpy99I CGWCG 1 cut(s) 195
HpyAV CCTTC 4 cut(s) 292, 354, 456, 515
HpyCH4III ACNGT 2 cut(s) 166, 263
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 6 cut(s) 123, 147, 207, 338, 432, 549
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 4 cut(s) 8, 58, 95, 529
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 1 cut(s) 375
Kzo9I GATC 3 cut(s) 201, 400, 653
LpnPI CCDG 2 cut(s) 383, 442
LweI GCATC 1 cut(s) 325
MaeI CTAG 1 cut(s) 482
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 3 cut(s) 158, 166, 376
MalI GATC 3 cut(s) 203, 402, 655
MboI GATC 3 cut(s) 201, 400, 653
MboII GAAGA 8 cut(s) 28, 33, 41, 121, 188, 545, 587, 663
MflI RGATCY 2 cut(s) 201, 653
MhlI GDGCHC 1 cut(s) 551
MluCI AATT 3 cut(s) 313, 461, 642
MnlI CCTC 3 cut(s) 194, 248, 569
MwoI GCNNNNNNNGC 1 cut(s) 335
NdeII GATC 3 cut(s) 201, 400, 653
NlaIII CATG 1 cut(s) 375
NmuCI GTSAC 1 cut(s) 376
PcsI WCGNNNNNNNCGW 2 cut(s) 264, 551
PfeI GAWTC 5 cut(s) 4, 82, 173, 271, 578
PsuI RGATCY 2 cut(s) 201, 653
Sau3AI GATC 3 cut(s) 201, 400, 653
SduI GDGCHC 1 cut(s) 551
SetI ASST 3 cut(s) 216, 346, 530
SfaNI GCATC 1 cut(s) 325
SmlI CTYRAG 3 cut(s) 516, 619, 629
SmoI CTYRAG 3 cut(s) 516, 619, 629
Sse9I AATT 3 cut(s) 313, 461, 642
SspMI CTAG 1 cut(s) 482
TaaI ACNGT 2 cut(s) 166, 263
TaiI ACGT 1 cut(s) 216
TaqI TCGA 3 cut(s) 240, 258, 649
TasI AATT 3 cut(s) 313, 461, 642
TfiI GAWTC 5 cut(s) 4, 82, 173, 271, 578
TscAI CASTG 1 cut(s) 568
TseFI GTSAC 1 cut(s) 376
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 4 cut(s) 17, 95, 360, 594
TspRI CASTG 1 cut(s) 568
VneI GTGCAC 1 cut(s) 547
XapI RAATTY 3 cut(s) 313, 461, 642
XspI CTAG 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.