MD13G1017800.v1.1

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0017081
Physical Location & Seq
Forward (+)
1147821 .. 1148780
960 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1017800.v1.1.491

Sequence Viewer

Length: 645 bp
ATGAATTTGTGTTTGCTACATGCTTTGTTGAAAGGCTGCAAGGTTTGCATAAAGAAAAATAGAAGAGATCATTGGCTTAACACCCTTTTGCTTAGCAAATTCTTCGGTTCCTGCGGTGTTCATCAACACCTTCGGAAAAACGAGAAGAATGTGTTCTGCATAGACTGCAGCCTCCACCTCTGCAGGCATTGCATGACATCTCATTGCCTTCACAAAAAGCTTCAGATCTGCAAATACGTTTATCATGATGTCATTCGCCTTCAAGAAATTCAGAAGCATCTTGACTGCTCCAAAATTCAGACATATAAAATCAATGGCGAGAAAGCTGTGCATCTAAATCCTCGTCCTCAATCCAAAGACGCGAAACCATCAACAAAAGCAAAGTTTGGTGCTTCCTGTGAAGCTTGTGGGAGATATCTACAGGACATGCCAAATCGCTACTGCTCCATCGCATGCAAGGTAATTGTTGTTGCTTGTCAGTTCCAAATTTTCGACTCCTTTTTGATATTTCGCACTCCGATCGCCTGTAAGGGATCACGAAACATTTGCTTGCTATTCAAATTTTCAGGTATCGATAGTTTCAGTGAAGCCGAAAGACCACCAAAGTCACAAATTCATCACCGTTGCAATGCGCGAATACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ zf-B_box

Protein Analysis

215

Amino Acids

24.71

Weight (kDa)

9.5

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 78 - 154 5.4e-29 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01818 AT2G01818
fragaria_vesca FvH4_4g33250
malus_domestica MD13G1017800.v1.1 MD16G1015800.v1.1
prunus_persica Prupe.1G335800_v2.0.a1
pyrus_communis pycom16g01470
rosa_chinensis RchiOBHm_Chr4g0442401
rosa_laevigata RLG00000006013
rosa_samantha Rh4AG392500 Rh4CG421300 Rh4DG399300
rosa_wichuraiana Rw4G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 362, 634
AciI CCGC 1 cut(s) 114
AclWI GGATC 1 cut(s) 541
AcsI RAATTY 7 cut(s) 4, 98, 267, 294, 486, 560, 612
AcuI CTGAAG 1 cut(s) 206
AgsI TTSAA 3 cut(s) 31, 263, 559
AjuI GAANNNNNNNTTGG 2 cut(s) 55, 87
AluBI AGCT 3 cut(s) 220, 326, 404
AluI AGCT 3 cut(s) 220, 326, 404
AlwI GGATC 1 cut(s) 541
ApeKI GCWGC 2 cut(s) 36, 168
ApoI RAATTY 7 cut(s) 4, 98, 267, 294, 486, 560, 612
Asp700I GAANNNNTTC 1 cut(s) 152
AspLEI GCGC 1 cut(s) 634
AsuHPI GGTGA 1 cut(s) 611
BbvI GCAGC 2 cut(s) 23, 180
BccI CCATC 2 cut(s) 376, 455
BcgI CGANNNNNNTGC 6 cut(s) 85, 119, 502, 528, 536, 562
BfmI CTRYAG 3 cut(s) 166, 181, 419
BglII AGATCT 1 cut(s) 225
BisI GCNGC 2 cut(s) 37, 169
BlpI GCTNAGC 1 cut(s) 92
BlsI GCNGC 2 cut(s) 38, 170
BmiI GGNNCC 1 cut(s) 109
BmsI GCATC 2 cut(s) 286, 340
Bpu1102I GCTNAGC 1 cut(s) 92
Bsa29I ATCGAT 1 cut(s) 573
Bse3DI GCAATG 3 cut(s) 187, 202, 634
BseCI ATCGAT 1 cut(s) 573
BseMI GCAATG 3 cut(s) 187, 202, 634
BseXI GCAGC 2 cut(s) 23, 180
Bsh1236I CGCG 2 cut(s) 362, 634
Bsh1285I CGRYCG 1 cut(s) 522
BshVI ATCGAT 1 cut(s) 573
BsiEI CGRYCG 1 cut(s) 522
Bsp143I GATC 4 cut(s) 67, 225, 519, 533
Bsp1720I GCTNAGC 1 cut(s) 92
BspACI CCGC 1 cut(s) 114
BspDI ATCGAT 1 cut(s) 573
BspFNI CGCG 2 cut(s) 362, 634
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 109
BspMAI CTGCAG 2 cut(s) 170, 185
BspPI GGATC 1 cut(s) 541
BsrDI GCAATG 3 cut(s) 187, 202, 634
BssMI GATC 4 cut(s) 67, 225, 519, 533
Bst4CI ACNGT 1 cut(s) 623
Bst6I CTCTTC 1 cut(s) 58
BstAPI GCANNNNNTGC 3 cut(s) 45, 165, 189
BstC8I GCNNGC 3 cut(s) 185, 454, 551
BstDEI CTNAG 1 cut(s) 92
BstFNI CGCG 2 cut(s) 362, 634
BstHHI GCGC 1 cut(s) 634
BstKTI GATC 4 cut(s) 70, 228, 522, 536
BstMBI GATC 4 cut(s) 67, 225, 519, 533
BstMCI CGRYCG 1 cut(s) 522
BstMWI GCNNNNNNNGC 3 cut(s) 45, 165, 189
BstNSI RCATGY 3 cut(s) 23, 430, 456
BstSFI CTRYAG 3 cut(s) 166, 181, 419
BstUI CGCG 2 cut(s) 362, 634
BstV1I GCAGC 2 cut(s) 23, 180
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
Bsu15I ATCGAT 1 cut(s) 573
BsuTUI ATCGAT 1 cut(s) 573
BtgZI GCGATG 1 cut(s) 433
BtsIMutI CAGTG 1 cut(s) 589
Cac8I GCNNGC 3 cut(s) 185, 454, 551
CciI TCATGA 1 cut(s) 244
CfoI GCGC 1 cut(s) 634
ClaI ATCGAT 1 cut(s) 573
CseI GACGC 1 cut(s) 368
CviAII CATG 5 cut(s) 20, 193, 245, 427, 453
CviJI RGCY 7 cut(s) 36, 76, 171, 220, 326, 404, 590
CviKI_1 RGCY 7 cut(s) 36, 76, 171, 220, 326, 404, 590
DdeI CTNAG 1 cut(s) 92
DpnI GATC 4 cut(s) 69, 227, 521, 535
DpnII GATC 4 cut(s) 67, 225, 519, 533
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
Eco32I GATATC 1 cut(s) 416
Eco57I CTGAAG 1 cut(s) 206
EcoRV GATATC 1 cut(s) 416
FaeI CATG 5 cut(s) 23, 196, 248, 430, 456
FaiI YATR 9 cut(s) 21, 50, 161, 194, 246, 304, 306, 428, 454
FatI CATG 5 cut(s) 19, 192, 244, 426, 452
Fnu4HI GCNGC 2 cut(s) 37, 169
Fsp4HI GCNGC 2 cut(s) 37, 169
GlaI GCGC 1 cut(s) 633
GluI GCNGC 2 cut(s) 37, 169
HgaI GACGC 1 cut(s) 368
HhaI GCGC 1 cut(s) 634
Hin1II CATG 5 cut(s) 23, 196, 248, 430, 456
Hin6I GCGC 1 cut(s) 632
HinP1I GCGC 1 cut(s) 632
HindIII AAGCTT 2 cut(s) 218, 402
HinfI GANTC 1 cut(s) 494
HphI GGTGA 1 cut(s) 611
Hpy188I TCNGA 5 cut(s) 135, 225, 273, 300, 519
Hpy188III TCNNGA 4 cut(s) 245, 263, 281, 537
HpyAV CCTTC 3 cut(s) 140, 218, 269
HpyCH4III ACNGT 1 cut(s) 623
HpyCH4IV ACGT 1 cut(s) 237
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 165, 189
HpyF3I CTNAG 1 cut(s) 92
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 5 cut(s) 23, 196, 248, 430, 456
HspAI GCGC 1 cut(s) 632
Kzo9I GATC 4 cut(s) 67, 225, 519, 533
LmnI GCTCC 2 cut(s) 293, 449
LpnPI CCDG 6 cut(s) 124, 169, 407, 409, 538, 552
Lsp1109I GCAGC 2 cut(s) 23, 180
LweI GCATC 2 cut(s) 286, 340
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 606
MalI GATC 4 cut(s) 69, 227, 521, 535
MboI GATC 4 cut(s) 67, 225, 519, 533
MboII GAAGA 3 cut(s) 75, 94, 157
MflI RGATCY 1 cut(s) 225
MluCI AATT 8 cut(s) 4, 98, 267, 294, 462, 486, 560, 612
MlyI GAGTC 1 cut(s) 488
MnlI CCTC 4 cut(s) 182, 188, 351, 357
MroXI GAANNNNTTC 1 cut(s) 152
MseI TTAA 1 cut(s) 78
MvnI CGCG 2 cut(s) 362, 634
MwoI GCNNNNNNNGC 3 cut(s) 45, 165, 189
NdeII GATC 4 cut(s) 67, 225, 519, 533
NlaIII CATG 5 cut(s) 23, 196, 248, 430, 456
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 606
NspI RCATGY 3 cut(s) 23, 430, 456
PaeI GCATGC 1 cut(s) 456
PagI TCATGA 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 152
PkrI GCNGC 2 cut(s) 38, 170
Ple19I CGATCG 1 cut(s) 522
PleI GAGTC 1 cut(s) 488
PpsI GAGTC 1 cut(s) 488
PspN4I GGNNCC 1 cut(s) 109
PstI CTGCAG 2 cut(s) 170, 185
PsuI RGATCY 1 cut(s) 225
PvuI CGATCG 1 cut(s) 522
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 2 cut(s) 37, 169
Sau3AI GATC 4 cut(s) 67, 225, 519, 533
SchI GAGTC 1 cut(s) 488
SetI ASST 9 cut(s) 45, 132, 180, 222, 240, 328, 406, 462, 571
SfaNI GCATC 2 cut(s) 286, 340
SfcI CTRYAG 3 cut(s) 166, 181, 419
SphI GCATGC 1 cut(s) 456
Sse9I AATT 8 cut(s) 4, 98, 267, 294, 462, 486, 560, 612
SsiI CCGC 1 cut(s) 114
TaaI ACNGT 1 cut(s) 623
TaiI ACGT 1 cut(s) 240
TaqI TCGA 2 cut(s) 492, 573
TasI AATT 8 cut(s) 4, 98, 267, 294, 462, 486, 560, 612
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 589
TseFI GTSAC 1 cut(s) 606
TseI GCWGC 2 cut(s) 36, 168
Tsp45I GTSAC 1 cut(s) 606
TspDTI ATGAA 3 cut(s) 17, 110, 605
TspRI CASTG 1 cut(s) 589
XapI RAATTY 7 cut(s) 4, 98, 267, 294, 486, 560, 612
XceI RCATGY 3 cut(s) 23, 430, 456
XmnI GAANNNNTTC 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.