Rh4DG399300

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0017081
Physical Location & Seq
Forward (+)
61552672 .. 61555762
3091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG399300.1

Sequence Viewer

Length: 501 bp
ATGAAAGCTCATTGTCTCCATACAAAGCTTCAAATCTGCAAATATGTATATCATGATGTACTTCGCCTTCAAGAAATTCAGAAGCATGTTGATTGTGCTAGAATTCAGACATATAAAATCAATGGTGACAAAGCTGTGCATCTAAATCCTCGTCCAATGTCCAAGGATGCCAAACCATCAACAAAAGCAAAGTTTGGTTCTGCTTGTGATGTTTGTGGTAGATATCTACAAGACATGCCAAATCGCTTCTGCTCCATTGCTTGTAAGGCCTCTGTAGAATCAGTGAAGCCTAAACACCAAAGTCACGAATTCATCGCCTTTGGAATTCCAGAATGTGGTGGCTATTCACCTCAAGGGAATAACAATTCGGAAACATATATGAGTGAAATGGAATCCTCTATCTCGTCTGAGGAGATGAATGCTTGGGTAAGTTCAGCACTGAAGCCAAGGAGGCATTTGCACAAGAGGAAAGGCATCCCGCACAGGTCTCCTTTATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ zf-B_box

Protein Analysis

166

Amino Acids

18.79

Weight (kDa)

9.24

Isoelectric Point (pI)

64.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 14 - 89 3.7e-27 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01818 AT2G01818
fragaria_vesca FvH4_4g33250
malus_domestica MD13G1017800.v1.1 MD16G1015800.v1.1
prunus_persica Prupe.1G335800_v2.0.a1
pyrus_communis pycom16g01470
rosa_chinensis RchiOBHm_Chr4g0442401
rosa_laevigata RLG00000006013
rosa_samantha Rh4AG392500 Rh4CG421300 Rh4DG399300
rosa_wichuraiana Rw4G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 335
AciI CCGC 1 cut(s) 479
AcsI RAATTY 4 cut(s) 75, 102, 308, 324
AcuI CTGAAG 1 cut(s) 461
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 335
AgsI TTSAA 2 cut(s) 32, 71
AluBI AGCT 3 cut(s) 8, 28, 134
AluI AGCT 3 cut(s) 8, 28, 134
Alw26I GTCTC 2 cut(s) 20, 492
AoxI GGCC 1 cut(s) 267
ApoI RAATTY 4 cut(s) 75, 102, 308, 324
AsuHPI GGTGA 2 cut(s) 137, 339
BarI GAAGNNNNNNTAC 2 cut(s) 51, 83
BccI CCATC 1 cut(s) 184
BcoDI GTCTC 2 cut(s) 20, 492
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 273
BglI GCCNNNNNGGC 1 cut(s) 451
BmsI GCATC 3 cut(s) 148, 157, 483
BpuEI CTTGAG 1 cut(s) 336
BsaI GGTCTC 1 cut(s) 492
BsaJI CCNNGG 2 cut(s) 162, 446
Bsc4I CCNNNNNNNGG 1 cut(s) 335
Bse3DI GCAATG 1 cut(s) 255
BseDI CCNNGG 2 cut(s) 162, 446
BseGI GGATG 2 cut(s) 172, 474
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 399
BseRI GAGGAG 1 cut(s) 425
BshFI GGCC 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 335
BsmAI GTCTC 2 cut(s) 20, 492
BsmI GAATGC 1 cut(s) 424
BsnI GGCC 1 cut(s) 269
Bso31I GGTCTC 1 cut(s) 492
BspACI CCGC 1 cut(s) 479
BspANI GGCC 1 cut(s) 269
BspCNI CTCAG 1 cut(s) 400
BspHI TCATGA 1 cut(s) 52
BspTNI GGTCTC 1 cut(s) 492
BsrDI GCAATG 1 cut(s) 255
BssECI CCNNGG 2 cut(s) 162, 446
BssT1I CCWWGG 2 cut(s) 162, 446
BstDEI CTNAG 1 cut(s) 408
BstF5I GGATG 2 cut(s) 172, 474
BstMAI GTCTC 2 cut(s) 20, 492
BstMWI GCNNNNNNNGC 2 cut(s) 266, 451
BstNSI RCATGY 2 cut(s) 89, 238
BstSFI CTRYAG 1 cut(s) 273
BsuRI GGCC 1 cut(s) 269
BtgZI GCGATG 1 cut(s) 298
BtsCI GGATG 2 cut(s) 172, 474
BtsIMutI CAGTG 2 cut(s) 288, 437
CciI TCATGA 1 cut(s) 52
Csp6I GTAC 1 cut(s) 59
CviAII CATG 3 cut(s) 53, 86, 235
CviJI RGCY 7 cut(s) 8, 28, 134, 269, 289, 342, 445
CviKI_1 RGCY 7 cut(s) 8, 28, 134, 269, 289, 342, 445
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 1 cut(s) 408
Eco130I CCWWGG 2 cut(s) 162, 446
Eco147I AGGCCT 1 cut(s) 269
Eco31I GGTCTC 1 cut(s) 492
Eco32I GATATC 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 461
EcoRI GAATTC 3 cut(s) 102, 308, 324
EcoRV GATATC 1 cut(s) 224
EcoT14I CCWWGG 2 cut(s) 162, 446
ErhI CCWWGG 2 cut(s) 162, 446
FaeI CATG 3 cut(s) 56, 89, 238
FatI CATG 3 cut(s) 52, 85, 234
FauI CCCGC 1 cut(s) 486
FokI GGATG 2 cut(s) 179, 461
FspBI CTAG 1 cut(s) 99
HaeIII GGCC 1 cut(s) 269
Hin1II CATG 3 cut(s) 56, 89, 238
HindIII AAGCTT 1 cut(s) 26
HinfI GANTC 2 cut(s) 278, 392
HphI GGTGA 2 cut(s) 137, 339
Hpy188I TCNGA 4 cut(s) 81, 108, 370, 409
Hpy188III TCNNGA 4 cut(s) 53, 71, 305, 329
HpyAV CCTTC 1 cut(s) 77
HpyCH4V TGCA 3 cut(s) 39, 139, 460
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 451
HpyF3I CTNAG 1 cut(s) 408
Hsp92II CATG 3 cut(s) 56, 89, 238
LmnI GCTCC 1 cut(s) 257
LpnPI CCDG 2 cut(s) 342, 469
LweI GCATC 3 cut(s) 148, 157, 483
MaeI CTAG 1 cut(s) 99
MaeIII GTNAC 2 cut(s) 125, 302
MluCI AATT 5 cut(s) 75, 102, 308, 324, 364
MnlI CCTC 7 cut(s) 159, 280, 360, 403, 406, 444, 459
Mva1269I GAATGC 1 cut(s) 424
MwoI GCNNNNNNNGC 2 cut(s) 266, 451
NlaIII CATG 3 cut(s) 56, 89, 238
NmuCI GTSAC 2 cut(s) 125, 302
NspI RCATGY 2 cut(s) 89, 238
PagI TCATGA 1 cut(s) 52
PceI AGGCCT 1 cut(s) 269
PctI GAATGC 1 cut(s) 424
PfeI GAWTC 2 cut(s) 278, 392
PflMI CCANNNNNTGG 1 cut(s) 335
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SetI ASST 5 cut(s) 10, 30, 136, 352, 488
SfaNI GCATC 3 cut(s) 148, 157, 483
SfcI CTRYAG 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 351
SmoI CTYRAG 1 cut(s) 351
Sse9I AATT 5 cut(s) 75, 102, 308, 324, 364
SseBI AGGCCT 1 cut(s) 269
SsiI CCGC 1 cut(s) 479
SspMI CTAG 1 cut(s) 99
StuI AGGCCT 1 cut(s) 269
StyI CCWWGG 2 cut(s) 162, 446
TasI AATT 5 cut(s) 75, 102, 308, 324, 364
TatI WGTACW 1 cut(s) 58
TfiI GAWTC 2 cut(s) 278, 392
TscAI CASTG 2 cut(s) 288, 444
TseFI GTSAC 2 cut(s) 125, 302
Tsp45I GTSAC 2 cut(s) 125, 302
TspDTI ATGAA 3 cut(s) 17, 301, 431
TspRI CASTG 2 cut(s) 288, 444
Van91I CCANNNNNTGG 1 cut(s) 335
XapI RAATTY 4 cut(s) 75, 102, 308, 324
XceI RCATGY 2 cut(s) 89, 238
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.