Rw4G033900

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0017081
Physical Location & Seq
Forward (+)
61060770 .. 61063066
2297 bp
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UTR
Exon/CDS
Intron
Rw4G033900.1

Sequence Viewer

Length: 663 bp
ATGGTAGGCTGTGAACTTTCTGAAAAGACAAAGAAAACAGATTGGCTTAATACCCTTTTGCACAGCAAGTTCTTTGGTTCCTGTGGTGTTCATCAAGATCTTCGCAAAAACGAGAAGAATGTGTTTTGCATTGACTGTAGTCTCCGGCTCTGTAGGCACTGTATGAAAGCTCATTGTCTCCATACAAAGCTTCAAATCTGCAAATATGTATATCATGATGTACTTCGCCTTCAAGAAATTCAGAAGCATGTTGATTGTGCTAGAATTCAGACATATAAAATCAATGGTGACAAAGCTGTGCATCTAAATCCTCGTCCAATGTCCAAGGATGCCAAACCATCAACAAAAGCAAAGTTTGGTTCTGCTTGTGATGTTTGTGGTAGATATCTACAAGACATGCCAAATCGCTTCTGCTCCATTGCTTGTAAGGCCTCTGTAGAATCAGTGAAGCCTAAACACCAAAGTCATGAATTCATCGCCTTTGGAATTCCAGAATGTGGTGGCTATTCACCTCAAGGGAATAACAATTCGGAAACATATATGAGTGAAATGGAATCCTCTATCTCGTCTGAGGAGATGAATGCTTGGGTAAGTTCAGCACTGAAGCCAAGGAGGCATTTGCACAAGAGGAAAGGCATCCCGCACAGGTCTCCTTTATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ zf-B_box

Protein Analysis

220

Amino Acids

25.04

Weight (kDa)

9.13

Isoelectric Point (pI)

58.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 68 - 143 7e-27 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01818 AT2G01818
fragaria_vesca FvH4_4g33250
malus_domestica MD13G1017800.v1.1 MD16G1015800.v1.1
prunus_persica Prupe.1G335800_v2.0.a1
pyrus_communis pycom16g01470
rosa_chinensis RchiOBHm_Chr4g0442401
rosa_laevigata RLG00000006013
rosa_samantha Rh4AG392500 Rh4CG421300 Rh4DG399300
rosa_wichuraiana Rw4G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 497
AciI CCGC 1 cut(s) 641
AcsI RAATTY 4 cut(s) 237, 264, 470, 486
AcuI CTGAAG 1 cut(s) 623
AfaI GTAC 1 cut(s) 222
AfiI CCNNNNNNNGG 1 cut(s) 497
AgsI TTSAA 2 cut(s) 194, 233
AluBI AGCT 3 cut(s) 170, 190, 296
AluI AGCT 3 cut(s) 170, 190, 296
Alw26I GTCTC 3 cut(s) 146, 182, 654
AoxI GGCC 1 cut(s) 429
ApoI RAATTY 4 cut(s) 237, 264, 470, 486
AsuHPI GGTGA 2 cut(s) 299, 501
BarI GAAGNNNNNNTAC 2 cut(s) 213, 245
BccI CCATC 1 cut(s) 346
BcoDI GTCTC 3 cut(s) 146, 182, 654
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 3 cut(s) 136, 151, 435
BglI GCCNNNNNGGC 1 cut(s) 613
BglII AGATCT 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 79
BmsI GCATC 3 cut(s) 310, 319, 645
BoxI GACNNNNGTC 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 498
BsaI GGTCTC 1 cut(s) 654
BsaJI CCNNGG 2 cut(s) 324, 608
Bsc4I CCNNNNNNNGG 1 cut(s) 497
Bse3DI GCAATG 1 cut(s) 417
BseDI CCNNGG 2 cut(s) 324, 608
BseGI GGATG 2 cut(s) 334, 636
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMI GCAATG 1 cut(s) 417
BseMII CTCAG 1 cut(s) 561
BseRI GAGGAG 1 cut(s) 587
BshFI GGCC 1 cut(s) 431
BsiSI CCGG 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 3 cut(s) 146, 182, 654
BsmI GAATGC 1 cut(s) 586
BsnI GGCC 1 cut(s) 431
Bso31I GGTCTC 1 cut(s) 654
Bsp143I GATC 1 cut(s) 97
BspACI CCGC 1 cut(s) 641
BspANI GGCC 1 cut(s) 431
BspCNI CTCAG 1 cut(s) 562
BspHI TCATGA 2 cut(s) 214, 466
BspLI GGNNCC 1 cut(s) 79
BspTNI GGTCTC 1 cut(s) 654
BsrDI GCAATG 1 cut(s) 417
BssECI CCNNGG 2 cut(s) 324, 608
BssMI GATC 1 cut(s) 97
BssT1I CCWWGG 2 cut(s) 324, 608
Bst4CI ACNGT 2 cut(s) 137, 161
BstDEI CTNAG 1 cut(s) 570
BstF5I GGATG 2 cut(s) 334, 636
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 3 cut(s) 146, 182, 654
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 3 cut(s) 154, 428, 613
BstNSI RCATGY 2 cut(s) 251, 400
BstPAI GACNNNNGTC 1 cut(s) 138
BstSFI CTRYAG 3 cut(s) 136, 151, 435
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
BsuRI GGCC 1 cut(s) 431
BtgZI GCGATG 1 cut(s) 460
BtsCI GGATG 2 cut(s) 334, 636
BtsIMutI CAGTG 3 cut(s) 157, 450, 599
CciI TCATGA 2 cut(s) 214, 466
Csp6I GTAC 1 cut(s) 221
CviAII CATG 4 cut(s) 215, 248, 397, 467
CviQI GTAC 1 cut(s) 221
DdeI CTNAG 1 cut(s) 570
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eco130I CCWWGG 2 cut(s) 324, 608
Eco147I AGGCCT 1 cut(s) 431
Eco31I GGTCTC 1 cut(s) 654
Eco32I GATATC 1 cut(s) 386
Eco57I CTGAAG 1 cut(s) 623
EcoRI GAATTC 3 cut(s) 264, 470, 486
EcoRV GATATC 1 cut(s) 386
EcoT14I CCWWGG 2 cut(s) 324, 608
ErhI CCWWGG 2 cut(s) 324, 608
FaeI CATG 4 cut(s) 218, 251, 400, 470
FatI CATG 4 cut(s) 214, 247, 396, 466
FauI CCCGC 1 cut(s) 648
FokI GGATG 2 cut(s) 341, 623
FspBI CTAG 1 cut(s) 261
HaeIII GGCC 1 cut(s) 431
HapII CCGG 1 cut(s) 145
Hin1II CATG 4 cut(s) 218, 251, 400, 470
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 2 cut(s) 440, 554
HpaII CCGG 1 cut(s) 145
HphI GGTGA 2 cut(s) 299, 501
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 5 cut(s) 22, 243, 270, 532, 571
Hpy188III TCNNGA 5 cut(s) 95, 215, 233, 467, 491
Hpy8I GTNNAC 1 cut(s) 14
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 2 cut(s) 137, 161
HpyCH4V TGCA 5 cut(s) 61, 129, 201, 301, 622
HpyF10VI GCNNNNNNNGC 3 cut(s) 154, 428, 613
HpyF3I CTNAG 1 cut(s) 570
Hsp92II CATG 4 cut(s) 218, 251, 400, 470
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 419
LpnPI CCDG 4 cut(s) 94, 158, 504, 631
LweI GCATC 3 cut(s) 310, 319, 645
MaeI CTAG 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 287
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 2 cut(s) 92, 127
MflI RGATCY 1 cut(s) 97
MluCI AATT 5 cut(s) 237, 264, 470, 486, 526
MnlI CCTC 7 cut(s) 321, 442, 522, 565, 568, 606, 621
MseI TTAA 1 cut(s) 48
MspI CCGG 1 cut(s) 145
Mva1269I GAATGC 1 cut(s) 586
MwoI GCNNNNNNNGC 3 cut(s) 154, 428, 613
NdeII GATC 1 cut(s) 97
NlaIII CATG 4 cut(s) 218, 251, 400, 470
NlaIV GGNNCC 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 287
NspI RCATGY 2 cut(s) 251, 400
PagI TCATGA 2 cut(s) 214, 466
PceI AGGCCT 1 cut(s) 431
PctI GAATGC 1 cut(s) 586
PfeI GAWTC 2 cut(s) 440, 554
PflMI CCANNNNNTGG 1 cut(s) 497
PshAI GACNNNNGTC 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 79
PsuI RGATCY 1 cut(s) 97
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
SaqAI TTAA 1 cut(s) 48
Sau3AI GATC 1 cut(s) 97
SetI ASST 5 cut(s) 172, 192, 298, 514, 650
SfaNI GCATC 3 cut(s) 310, 319, 645
SfcI CTRYAG 3 cut(s) 136, 151, 435
SmlI CTYRAG 1 cut(s) 513
SmoI CTYRAG 1 cut(s) 513
Sse9I AATT 5 cut(s) 237, 264, 470, 486, 526
SseBI AGGCCT 1 cut(s) 431
SsiI CCGC 1 cut(s) 641
SspMI CTAG 1 cut(s) 261
StuI AGGCCT 1 cut(s) 431
StyI CCWWGG 2 cut(s) 324, 608
TaaI ACNGT 2 cut(s) 137, 161
TasI AATT 5 cut(s) 237, 264, 470, 486, 526
TatI WGTACW 1 cut(s) 220
TfiI GAWTC 2 cut(s) 440, 554
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 3 cut(s) 164, 450, 606
TseFI GTSAC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 5 cut(s) 80, 179, 463, 483, 593
TspRI CASTG 3 cut(s) 164, 450, 606
Van91I CCANNNNNTGG 1 cut(s) 497
XapI RAATTY 4 cut(s) 237, 264, 470, 486
XceI RCATGY 2 cut(s) 251, 400
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.