Prupe.1G335800_v2.0.a1

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0017081
Physical Location & Seq
Reverse (-)
31692633 .. 31695090
2458 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G335800.1

Sequence Viewer

Length: 675 bp
ATGGGAGGCTGCAAAGTTTGTATAAAGAAAAACAGAACAGATTGGCTTAATACCCTTTTGCTTAGCAAATTCTTCGGTTCCTGTGGTGTTCATCATGACCTTCGCAAAAATGAGAAGAACGTCTTCTGCATAGATTGCAGTATCCGCCTCTGTAGGCACTGTATGACAGCTCATTGCCTCCACACAAAGCTTCAGATCTGCAAATACGTCTACCATGATGTGGTTCGCCTTCAAGAAATTCAGAAGCATCTTGACTGTTCTAAAATTCAGACATATAAAATCAACGGCGAGAAAGCTGTGCATCTAAATCCTCGCCCTCTAGCCAAAGATGCCAAGCCATCAACAAAAGCAAAGTTTGGTGCTTCCTGTGAAGCTTGTGGGAGATATCTGCAGGACATGCCAAATCGTTACTGCTCCATTGCCTGCAAGGCATCTATAGTCCCAGTGAAGCCTGAAGACCAAAGTCACAAATTCATCGCGGTTACTATACCACAATATGGTGATTTTTCATTAAAAGGTAACTGCAATTCCGAAACAAACATGAGCGAAATGGAATCATCGATCTCGTTGGCTGAGTCGTCTGAGGAGATGACTGCTTGGGTATGTTCAGCATTGAAGCCAAGAAAGCTTTTGCATAAGAGGAAGGGCATCCCTCACAGAGCTCCTCTCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ zf-B_box

Protein Analysis

225

Amino Acids

25.32

Weight (kDa)

9.17

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017081)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01818 AT2G01818
fragaria_vesca FvH4_4g33250
malus_domestica MD13G1017800.v1.1 MD16G1015800.v1.1
prunus_persica Prupe.1G335800_v2.0.a1
pyrus_communis pycom16g01470
rosa_chinensis RchiOBHm_Chr4g0442401
rosa_laevigata RLG00000006013
rosa_samantha Rh4AG392500 Rh4CG421300 Rh4DG399300
rosa_wichuraiana Rw4G033900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 220, 497
AccI GTMKAC 1 cut(s) 210
AccII CGCG 1 cut(s) 479
AciI CCGC 2 cut(s) 145, 479
AcsI RAATTY 4 cut(s) 68, 237, 264, 470
AcuI CTGAAG 2 cut(s) 176, 474
AfiI CCNNNNNNNGG 2 cut(s) 220, 497
AgsI TTSAA 2 cut(s) 233, 616
AluBI AGCT 6 cut(s) 170, 190, 296, 374, 628, 662
AluI AGCT 6 cut(s) 170, 190, 296, 374, 628, 662
Alw21I GWGCWC 1 cut(s) 664
ApeKI GCWGC 1 cut(s) 9
ApoI RAATTY 4 cut(s) 68, 237, 264, 470
Asp700I GAANNNNTTC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 512
BanII GRGCYC 1 cut(s) 664
BbsI GAAGAC 2 cut(s) 115, 462
Bbv12I GWGCWC 1 cut(s) 664
BccI CCATC 1 cut(s) 346
BceAI ACGGC 1 cut(s) 301
BcgI CGANNNNNNTGC 2 cut(s) 55, 89
BciVI GTATCC 1 cut(s) 152
BfaI CTAG 1 cut(s) 320
BfmI CTRYAG 3 cut(s) 151, 389, 435
BfuI GTATCC 1 cut(s) 152
BglI GCCNNNNNGGC 1 cut(s) 428
BglII AGATCT 1 cut(s) 195
BisI GCNGC 1 cut(s) 10
BlpI GCTNAGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 11
BmiI GGNNCC 1 cut(s) 79
BmrI ACTGGG 1 cut(s) 437
BmsI GCATC 5 cut(s) 256, 310, 319, 440, 657
BmuI ACTGGG 1 cut(s) 437
BoxI GACNNNNGTC 1 cut(s) 462
BpiI GAAGAC 2 cut(s) 115, 462
BplI GAGNNNNNCTC 1 cut(s) 651
Bpu1102I GCTNAGC 1 cut(s) 62
Bsa29I ATCGAT 1 cut(s) 560
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 497
Bse1I ACTGG 1 cut(s) 443
Bse3DI GCAATG 2 cut(s) 172, 417
BseCI ATCGAT 1 cut(s) 560
BseGI GGATG 1 cut(s) 648
BseLI CCNNNNNNNGG 2 cut(s) 220, 497
BseMI GCAATG 2 cut(s) 172, 417
BseMII CTCAG 2 cut(s) 564, 573
BseNI ACTGG 1 cut(s) 443
BseRI GAGGAG 2 cut(s) 599, 654
Bsh1236I CGCG 1 cut(s) 479
BshVI ATCGAT 1 cut(s) 560
BsiHKAI GWGCWC 1 cut(s) 664
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 2 cut(s) 220, 497
BsmFI GGGAC 1 cut(s) 425
Bsp1286I GDGCHC 1 cut(s) 664
Bsp143I GATC 2 cut(s) 195, 561
Bsp1720I GCTNAGC 1 cut(s) 62
BspACI CCGC 2 cut(s) 145, 479
BspCNI CTCAG 2 cut(s) 565, 574
BspDI ATCGAT 1 cut(s) 560
BspFNI CGCG 1 cut(s) 479
BspHI TCATGA 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 79
BspMAI CTGCAG 1 cut(s) 393
BsrDI GCAATG 2 cut(s) 172, 417
BsrI ACTGG 1 cut(s) 443
BssMI GATC 2 cut(s) 195, 561
Bst4CI ACNGT 2 cut(s) 161, 257
BstAPI GCANNNNNTGC 2 cut(s) 135, 397
BstC8I GCNNGC 1 cut(s) 424
BstDEI CTNAG 3 cut(s) 62, 573, 582
BstF5I GGATG 1 cut(s) 648
BstFNI CGCG 1 cut(s) 479
BstKTI GATC 2 cut(s) 198, 564
BstMBI GATC 2 cut(s) 195, 561
BstMWI GCNNNNNNNGC 6 cut(s) 135, 144, 329, 397, 428, 625
BstNSI RCATGY 1 cut(s) 400
BstPAI GACNNNNGTC 1 cut(s) 462
BstSFI CTRYAG 3 cut(s) 151, 389, 435
BstUI CGCG 1 cut(s) 479
BstV2I GAAGAC 2 cut(s) 115, 462
BstX2I RGATCY 1 cut(s) 195
BstYI RGATCY 1 cut(s) 195
Bsu15I ATCGAT 1 cut(s) 560
BsuI GTATCC 1 cut(s) 152
BsuTUI ATCGAT 1 cut(s) 560
BtgZI GCGATG 1 cut(s) 460
BtsCI GGATG 1 cut(s) 648
BtsIMutI CAGTG 2 cut(s) 157, 450
Cac8I GCNNGC 1 cut(s) 424
CciI TCATGA 1 cut(s) 94
ClaI ATCGAT 1 cut(s) 560
CviAII CATG 4 cut(s) 95, 215, 397, 541
DdeI CTNAG 3 cut(s) 62, 573, 582
DpnI GATC 2 cut(s) 197, 563
DpnII GATC 2 cut(s) 195, 561
EciI GGCGGA 1 cut(s) 134
Ecl136II GAGCTC 1 cut(s) 662
Eco24I GRGCYC 1 cut(s) 664
Eco32I GATATC 1 cut(s) 386
Eco53kI GAGCTC 1 cut(s) 662
Eco57I CTGAAG 2 cut(s) 176, 474
EcoICRI GAGCTC 1 cut(s) 662
EcoRV GATATC 1 cut(s) 386
EcoT38I GRGCYC 1 cut(s) 664
FaeI CATG 4 cut(s) 98, 218, 400, 544
FalI AAGNNNNNCTT 2 cut(s) 107, 139
FaqI GGGAC 1 cut(s) 425
FatI CATG 4 cut(s) 94, 214, 396, 540
FblI GTMKAC 1 cut(s) 210
Fnu4HI GCNGC 1 cut(s) 10
FokI GGATG 1 cut(s) 635
FriOI GRGCYC 1 cut(s) 664
Fsp4HI GCNGC 1 cut(s) 10
FspBI CTAG 1 cut(s) 320
GluI GCNGC 1 cut(s) 10
Hin1II CATG 4 cut(s) 98, 218, 400, 544
HindIII AAGCTT 3 cut(s) 188, 372, 626
HinfI GANTC 2 cut(s) 554, 575
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 5 cut(s) 195, 243, 270, 532, 583
Hpy188III TCNNGA 3 cut(s) 95, 233, 251
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 3 cut(s) 110, 239, 637
HpyCH4III ACNGT 2 cut(s) 161, 257
HpyCH4IV ACGT 2 cut(s) 120, 207
HpyCH4V TGCA 9 cut(s) 12, 129, 138, 201, 301, 391, 426, 525, 634
HpyF10VI GCNNNNNNNGC 6 cut(s) 135, 144, 329, 397, 428, 625
HpyF3I CTNAG 3 cut(s) 62, 573, 582
HpySE526I ACGT 2 cut(s) 120, 207
Hsp92II CATG 4 cut(s) 98, 218, 400, 544
Kzo9I GATC 2 cut(s) 195, 561
LmnI GCTCC 2 cut(s) 419, 667
LpnPI CCDG 6 cut(s) 94, 377, 379, 436, 456, 465
LweI GCATC 5 cut(s) 256, 310, 319, 440, 657
MaeI CTAG 1 cut(s) 320
MaeII ACGT 2 cut(s) 120, 207
MaeIII GTNAC 4 cut(s) 407, 464, 481, 518
MalI GATC 2 cut(s) 197, 563
MboI GATC 2 cut(s) 195, 561
MboII GAAGA 4 cut(s) 64, 115, 127, 467
MflI RGATCY 1 cut(s) 195
MhlI GDGCHC 1 cut(s) 664
MluCI AATT 5 cut(s) 68, 237, 264, 470, 526
MlyI GAGTC 1 cut(s) 584
MnlI CCTC 8 cut(s) 158, 188, 321, 327, 577, 633, 663, 675
MroXI GAANNNNTTC 1 cut(s) 122
MseI TTAA 2 cut(s) 48, 512
MvnI CGCG 1 cut(s) 479
MwoI GCNNNNNNNGC 6 cut(s) 135, 144, 329, 397, 428, 625
NdeII GATC 2 cut(s) 195, 561
NlaIII CATG 4 cut(s) 98, 218, 400, 544
NlaIV GGNNCC 1 cut(s) 79
NmuCI GTSAC 1 cut(s) 464
NspI RCATGY 1 cut(s) 400
PagI TCATGA 1 cut(s) 94
PdmI GAANNNNTTC 1 cut(s) 122
PfeI GAWTC 1 cut(s) 554
PflMI CCANNNNNTGG 2 cut(s) 220, 497
PkrI GCNGC 1 cut(s) 11
PleI GAGTC 1 cut(s) 583
PpsI GAGTC 1 cut(s) 583
PshAI GACNNNNGTC 1 cut(s) 462
Psp124BI GAGCTC 1 cut(s) 664
PspN4I GGNNCC 1 cut(s) 79
PstI CTGCAG 1 cut(s) 393
PsuI RGATCY 1 cut(s) 195
SacI GAGCTC 1 cut(s) 664
SaqAI TTAA 2 cut(s) 48, 512
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 2 cut(s) 195, 561
SchI GAGTC 1 cut(s) 584
SduI GDGCHC 1 cut(s) 664
SfaNI GCATC 5 cut(s) 256, 310, 319, 440, 657
SfcI CTRYAG 3 cut(s) 151, 389, 435
Sse9I AATT 5 cut(s) 68, 237, 264, 470, 526
SsiI CCGC 2 cut(s) 145, 479
SspMI CTAG 1 cut(s) 320
SstI GAGCTC 1 cut(s) 664
TaaI ACNGT 2 cut(s) 161, 257
TaiI ACGT 2 cut(s) 123, 210
TaqI TCGA 1 cut(s) 560
TasI AATT 5 cut(s) 68, 237, 264, 470, 526
TfiI GAWTC 1 cut(s) 554
Tru1I TTAA 2 cut(s) 48, 512
Tru9I TTAA 2 cut(s) 48, 512
TscAI CASTG 2 cut(s) 164, 450
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 1 cut(s) 9
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 3 cut(s) 80, 463, 498
TspRI CASTG 2 cut(s) 164, 450
Van91I CCANNNNNTGG 2 cut(s) 220, 497
XapI RAATTY 4 cut(s) 68, 237, 264, 470
XceI RCATGY 1 cut(s) 400
XmiI GTMKAC 1 cut(s) 210
XmnI GAANNNNTTC 1 cut(s) 122
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.